C++ (Cpp) SetCutoffScore Examples

Example #1

File: blast_prot_options.cpp Project: jackgopack4/pico-blast

void
CBlastProteinOptionsHandle::SetHitSavingOptionsDefaults()
{
    SetHitlistSize(500);
    SetEvalueThreshold(BLAST_EXPECT_VALUE);
    SetMinDiagSeparation(0);
    SetPercentIdentity(0);
    // set some default here, allow INT4MAX to mean infinity
    SetMaxNumHspPerSequence(0); 

    SetCutoffScore(0); // will be calculated based on evalue threshold,
    // effective lengths and Karlin-Altschul params in BLAST_Cutoffs_simple
    // and passed to the engine in the params structure
}

Example #2

File: blast_nucl_options.cpp Project: swuecho/igblast

void
CBlastNucleotideOptionsHandle::SetMBHitSavingOptionsDefaults()
{
    SetHitlistSize(500);
    SetEvalueThreshold(BLAST_EXPECT_VALUE);
    SetPercentIdentity(0);
    // set some default here, allow INT4MAX to mean infinity
    SetMaxNumHspPerSequence(0); 
    SetMinDiagSeparation(6);
    // Default is to show all results. -RMH-
    SetMaskLevel(101);

    SetCutoffScore(0); // will be calculated based on evalue threshold,
    // effective lengths and Karlin-Altschul params in BLAST_Cutoffs_simple
    // and passed to the engine in the params structure

    SetLowScorePerc(0.15);

    SetQueryCovHspPerc(0);
}