Example #1
0
/* LoadMgeTrnHmmFile: */
static void LoadMgeTrnHmmFile(int nIter)
{
   char hext[15], hmmFile[255];

   ResetHeap(&hmmStack);
   CreateHeap(&hmmStack, "Model Stack", MSTAK, 1, 1.0, 80000, 400000);

   sprintf(hext, "mmf%d", nIter);
   MakeFN(mmfFn, outDir, hext, hmmFile);

   CreateHMMSet(&hset, &hmmStack, TRUE);
   AddMMF(&hset, hmmFile);
   if (trace & T_TOP)
      printf("Loading MGE-trained HMM in iteration %d ... ... \n", nIter);
   if (MakeHMMSet(&hset, hmmListFn) < SUCCESS)
      HError(2321, "Initialise: MakeHMMSet failed");
   if (LoadHMMSet(&hset, hmmDir, hmmExt) < SUCCESS)
      HError(2321, "Initialise: LoadHMMSet failed");
   SetParmHMMSet(&hset);
   /* variance inversion, MGE training only support INVDIAGC case */
   ConvDiagC(&hset, TRUE);

   if (funcType == MGE_TRAIN)
      AttachAccToModel();
}
Example #2
0
/* Initialise: load hmm and initialise global data structures */
void Initialise(void)
{
   LabId  hmmId;
   char base[MAXSTRLEN];
   char path[MAXSTRLEN];
   char ext[MAXSTRLEN]; 
   int s;  

   /* Stacks for global structures requiring memory allocation */
   CreateHeap(&segmentStack,"SegStore", MSTAK, 1, 0.0, 100000, LONG_MAX);
   CreateHeap(&sequenceStack,"SeqStore", MSTAK, 1, 0.0, 10000, 10000);
   CreateHeap(&clustSetStack,"ClustSetStore", MSTAK, 1, 0.0, 1000, 1000);
   CreateHeap(&transStack,"TransStore", MSTAK, 1, 0.0, 1000, 1000);
   CreateHeap(&traceBackStack,"TraceBackStore", MSTAK, 1, 0.0, 1000, 1000);
   CreateHeap(&bufferStack,"BufferStore", MSTAK, 1, 0.0, 1000, 1000);
   CreateHeap(&msdinfoStack,"MSDInfoStore", MSTAK, 1, 0.0, 1000, 1000);

   /* Load HMM def */
   if(MakeOneHMM( &hset, BaseOf(hmmfn,base))<SUCCESS)
      HError(2128,"Initialise: MakeOneHMM failed");
   if(LoadHMMSet( &hset,PathOf(hmmfn,path),ExtnOf(hmmfn,ext))<SUCCESS)
      HError(2128,"Initialise: LoadHMMSet failed");
   SetParmHMMSet(&hset);
   if ((hset.hsKind==DISCRETEHS)||(hset.hsKind==TIEDHS))
      uFlags = (UPDSet) (uFlags & (~(UPMEANS|UPVARS)));
   AttachAccs(&hset, &gstack, uFlags);

   /* Get a pointer to the physical HMM and set related globals */
   hmmId = GetLabId(base,FALSE);   
   macroLink = FindMacroName(&hset,'h',hmmId);
   hmmLink = (HLink)macroLink->structure; 
   nStates = hmmLink->numStates;
   nStreams = hset.swidth[0];
   for(s=1; s<=nStreams; s++)
      maxMixInS[s] = MaxMixInS(hmmLink, s);
   msdInfo = CreateMSDInfo(&msdinfoStack, hmmLink);

   SetVFloor( &hset, vFloor, minVar);

   if(segLab != NULL)
      segId = GetLabId(segLab,TRUE);
   if(trace>0)
      PrintInitialInfo();

   thisP = CreateVector(&gstack,nStates);
   lastP = CreateVector(&gstack,nStates);
}
Example #3
0
/* Initialise: */
static void Initialise()
{
   char macroname[MAXSTRLEN];
   AdaptXForm *xform;

   /* load HMMs and init HMMSet related global variables */
   if (trace & T_TOP)
      printf("Loading HMM for updating ... ... \n");
   if (MakeHMMSet(&hset, hmmListFn) < SUCCESS)
      HError(2321, "Initialise: MakeHMMSet failed");
   if (LoadHMMSet(&hset, hmmDir, hmmExt) < SUCCESS)
      HError(2321, "Initialise: LoadHMMSet failed");
   SetParmHMMSet(&hset);
   /* variance inversion, MGE training only support INVDIAGC case */
   if (hset.ckind == DIAGC)
      ConvDiagC(&hset, TRUE);
   /* load transform */
   if (xformfn != NULL) {
      xform = LoadOneXForm(&hset, NameOf(xformfn, macroname), xformfn);
      SetXForm(&hset, &xfInfo, xform);
   }

   if (funcType == MGE_TRAIN)
      AttachAccToModel();

   /* reload the HMM for reference in training */
   if (mtInfo->bOrigHmmRef) {
      if (trace & T_TOP)
         printf("Loading HMM for reference ... ... \n");
      if (MakeHMMSet(&orighset, hmmListFn) < SUCCESS)
         HError(2321, "Initialise: MakeHMMSet failed");
      if (LoadHMMSet(&orighset, hmmDir, hmmExt) < SUCCESS)
         HError(2321, "Initialise: LoadHMMSet failed");
      SetParmHMMSet(&orighset);
      /* variance inversion, MGE training only support INVDIAGC case */
      if (hset.ckind == DIAGC)
         ConvDiagC(&orighset, TRUE);
      /* load transform */
      if (xformfn != NULL) {
         xform = LoadOneXForm(&orighset, NameOf(xformfn, macroname), xformfn);
         SetXForm(&orighset, &xfInfo, xform);
      }
   }

   if (trace & T_TOP) {
      printf("System is ");
      switch (hset.hsKind) {
      case PLAINHS:
         printf("PLAIN\n");
         break;
      case SHAREDHS:
         printf("SHARED\n");
         break;
      case TIEDHS:
         printf("TIED\n");
         break;
      case DISCRETEHS:
         printf("DISCRETE\n");
         break;
      }

      printf("%d Logical/%d Physical Models Loaded, VecSize=%d\n", hset.numLogHMM, hset.numPhyHMM, hset.vecSize);
      if (hset.numFiles > 0)
         printf("%d MMF input files\n", hset.numFiles);
      if (mmfFn != NULL)
         printf("Output to MMF file:  %s\n", mmfFn);
      fflush(stdout);
   }

   /* initialize a MgeTrnInfo for MGE training of HMM */
   InitMgeTrnInfo();
}
/* Initialise: load HMMs and create accumulators */
static void Initialise(void)
{
   int s,V;
   Boolean eSep;
   char base[MAXSTRLEN];
   char path[MAXSTRLEN];
   char ext[MAXSTRLEN];

   /* Load HMM defs */     
   if(MakeOneHMM(&hset,BaseOf(hmmfn,base))<SUCCESS)
      HError(2028,"Initialise: MakeOneHMM failed");
   if(LoadHMMSet(&hset,PathOf(hmmfn,path),ExtnOf(hmmfn,ext))<SUCCESS)
      HError(2028,"Initialise: LoadHMMSet failed");
   SetParmHMMSet(&hset);
   if (hset.hsKind==DISCRETEHS || hset.hsKind==TIEDHS)
      HError(2030,"Initialise: HCompV only uses continuous models");

   /* Create a heap to store the input data */
   /*CreateHeap(&iStack,"InBuf", MSTAK, 1, 0.5, 100000, LONG_MAX);*/
   
   /* Get a pointer to the physical HMM */
   hmmId = GetLabId(base,FALSE);
   macroLink = FindMacroName(&hset,'h',hmmId);
   if (macroLink==NULL)
      HError(2020,"Initialise: cannot find hmm %s in hset",hmmfn);
   hmmLink = (HLink)macroLink->structure;

   /* Find out for which streams full covariance is needed */
   CheckVarianceKind( );

   /* Create accumulators for the mean and variance */
   for (s=1;s<=hset.swidth[0]; s++){
      V = hset.swidth[s];
      accs[s].meanSum=CreateVector(&gstack,V);
      ZeroVector(accs[s].meanSum);
      if (fullcNeeded[s]) {
         accs[s].squareSum.inv=CreateSTriMat(&gstack,V);
         accs[s].fixed.inv=CreateSTriMat(&gstack,V);
         ZeroTriMat(accs[s].squareSum.inv);
      }
      else {
         accs[s].squareSum.var=CreateSVector(&gstack,V);
         accs[s].fixed.var=CreateSVector(&gstack,V);
         ZeroVector(accs[s].squareSum.var);
      }
   }

   /* Create an object to hold the input parameters */
   SetStreamWidths(hset.pkind,hset.vecSize,hset.swidth,&eSep);
   obs=MakeObservation(&gstack,hset.swidth,hset.pkind,FALSE,eSep);
   if(segLab != NULL) {
      segId = GetLabId(segLab,TRUE);
   }

   if (trace&T_TOP) {
      printf("Calculating Fixed Variance\n");
      printf("  HMM Prototype: %s\n",hmmfn);
      printf("  Segment Label: %s\n",(segLab==NULL)?"None":segLab);
      printf("  Num Streams  : %d\n",hset.swidth[0]);
      printf("  UpdatingMeans: %s\n",(meanUpdate)?"Yes":"No");
      printf("  Target Direct: %s\n",(outDir==NULL)?"Current":outDir);     
   }
}