/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: Test various issues in interactions with underlying
* filesystem
*
* Return: 0
*
* Programmer: Mark C. Miller, Wed Aug 29 11:07:16 PDT 2012
*-------------------------------------------------------------------------
*/
int main(int argc, char *argv[])
{
int i, driver = DB_PDB;
int show_all_errors = FALSE;
DBfile *dbfile;
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB",6)) {
driver = StringToDriver(argv[i]);
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
DBShowErrors(show_all_errors?DB_ALL_AND_DRVR:DB_NONE, NULL);
/* Test opening a file in a non-existent directory */
{
char *filename = "testfs_dir/testfs.silo";
dbfile = DBCreate(filename, 0, DB_LOCAL, "filesytem tests", driver);
assert(!dbfile);
}
CleanupDriverStuff();
return 0;
}
/***********************************************************************
* Program
*
* ucdsamp3
*
* Purpose
*
* Sample program illustrating use of SILO for writing 3D
* unstructured cell data.
*
* Modifications
*
* Robb Matzke, 1999-04-09
* Added argument parsing to control the driver which is used.
***********************************************************************/
int
main(int argc, char *argv[])
{
DBfile *dbfile;
int i, driver=DB_PDB;
char *filename="ucdsamp3.pdb";
int show_all_errors = FALSE;
/* Parse command-line */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB", 6)) {
driver = StringToDriver(argv[i]);
filename = "ucdsamp3.pdb";
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
filename = "ucdsamp3.h5";
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
DBShowErrors(show_all_errors?DB_ALL_AND_DRVR:DB_ALL, NULL);
dbfile = DBCreate(filename, 0, DB_LOCAL, "ucd test file", driver);
printf("Creating file: '%s'...\n", filename);
build_ucd3(dbfile, "mesh1");
DBClose(dbfile);
CleanupDriverStuff();
exit(0);
}
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: Test various read operations.
*
* Return: 0
*
* Programmer:Mark C. Miller, Thu Jul 15 08:23:56 PDT 2010
*-------------------------------------------------------------------------
*/
int
main(int argc, char *argv[])
{
int driver = DB_PDB, driverType = DB_PDB;
int i, err = 0;
DBfile *dbfile;
int show_all_errors = FALSE;
char filename[256];
char *obj_names[13];
int ordering[13];
/* Parse command-line */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB", 6)) {
driver = StringToDriver(argv[i]);
driverType = DB_PDB;
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
driverType = DB_HDF5;
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
DBShowErrors(show_all_errors?DB_ALL_AND_DRVR:DB_TOP, NULL);
DBForceSingle(1);
sprintf(filename, "multi_rect2d.%s", driverType==DB_PDB?"pdb":"h5");
dbfile = DBOpen(filename, DB_UNKNOWN, DB_READ);
DBSetDir(dbfile, "block7");
obj_names[0] = "cycle";
obj_names[1] = "d";
obj_names[2] = "../_fileinfo";
obj_names[3] = "otherfile:block7/u";
obj_names[4] = "v";
obj_names[5] = "u";
obj_names[6] = "/.silo/#000005";
obj_names[7] = "../block7/d";
obj_names[8] = "../block9/d";
obj_names[9] = "../block4/d";
obj_names[10] = "../mesh1_hidden";
obj_names[11] = "../mesh1";
obj_names[12] = "../block11/u";
DBSortObjectsByOffset(dbfile, 13, obj_names, ordering);
printf("UNsorted objects...\n");
for (i = 0; i < 13; i++)
printf("\t\"%s\"\n", obj_names[i]);
printf("Sorted objects...\n");
for (i = 0; i < 13; i++)
printf("\t\"%s\"\n", obj_names[ordering[i]]);
DBClose(dbfile);
return err;
}
/*--------------------*/
int main(int argc, char **argv) {
DBfile *db;
int i, driver = DB_PDB;
char *filename = "csg.pdb";
int show_all_errors = FALSE;
char *coordnames[3];
float *coord[3];
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB",6)) {
driver = StringToDriver(argv[i]);
filename = "mat3d_3across.pdb";
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
filename = "mat3d_3across.h5";
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
if (show_all_errors) DBShowErrors(DB_ALL_AND_DRVR, 0);
coordnames[0]=strdup("x");
coordnames[1]=strdup("y");
coordnames[2]=strdup("z");
coord[0] = x;
coord[1] = y;
coord[2] = z;
dims[0]=nx;
dims[1]=ny;
dims[2]=nz;
db=DBCreate(filename, DB_CLOBBER, DB_LOCAL,
"Mixed zone 3d test", driver);
DBPutQuadmesh(db, "mesh", coordnames, coord, dims, 3,
DB_FLOAT, DB_NONCOLLINEAR, NULL);
dims[0]=zx;
dims[1]=zy;
dims[2]=zz;
DBPutMaterial(db, "material", "mesh", nmat, matnos, matlist, dims, 3,
mix_next, mix_mat, mix_zone, mix_vf, mixlen, DB_FLOAT, NULL);
DBClose(db);
free(coordnames[0]);
free(coordnames[1]);
free(coordnames[2]);
CleanupDriverStuff();
return 0;
}
int
main(int argc, char *argv[])
{
DBfile *dbfile = NULL;
int i;
int driver = DB_PDB;
char *filename = "majorder.silo";
void *coords[2];
int ndims = 2;
int dims[2] = {3,2};
int dims1[2] = {4,3};
int colmajor = DB_COLMAJOR;
DBoptlist *optlist;
/* Parse command-line */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_", 3)) {
driver = StringToDriver(argv[i]);
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
dbfile = DBCreate(filename, DB_CLOBBER, DB_LOCAL, "test major order on quad meshes and vars", driver);
coords[0] = row_maj_x_data;
coords[1] = row_maj_y_data;
DBPutQuadmesh(dbfile, "row_major_mesh", 0, coords, dims1, ndims, DB_FLOAT, DB_NONCOLLINEAR, 0);
DBPutQuadvar1(dbfile, "row_major_var", "row_major_mesh", row_maj_v_data, dims, ndims, 0, 0, DB_INT, DB_ZONECENT, 0);
optlist = DBMakeOptlist(1);
DBAddOption(optlist, DBOPT_MAJORORDER, &colmajor);
coords[0] = col_maj_x_data;
coords[1] = col_maj_y_data;
DBPutQuadmesh(dbfile, "col_major_mesh", 0, coords, dims1, ndims, DB_FLOAT, DB_NONCOLLINEAR, optlist);
DBPutQuadvar1(dbfile, "col_major_var", "col_major_mesh", col_maj_v_data, dims, ndims, 0, 0, DB_INT, DB_ZONECENT, optlist);
DBFreeOptlist(optlist);
DBClose(dbfile);
CleanupDriverStuff();
return 0;
}
int
main(int argc, char *argv[])
{
int driver = DB_PDB;
char *filename = "empty.silo";
int show_all_errors = FALSE;
int i, pass;
char const * const cnames[3] = {"x","y","z"};
void *coords[3] = {(void*)1,(void*)2,(void*)3}; /* really funky dummy pointers */
void *vars[3] = {(void*)1,(void*)2,(void*)3}; /* really funky dummy pointers */
void const * const vvars[3] = {(void*)1,(void*)2,(void*)3}; /* really funky dummy pointers */
void *var = (void*)1;
int iarr[3] = {1,1,1}; /* dummy int array */
int ZDIMS[3] = {0,0,0};
double exts[4] = {0,0,0,0};
DBoptlist *ol = 0;
double dtime = 0.0;
int hide_from_gui=0;
int *gnodeno = 0;
int *gzoneno = 0;
char *ghostn = 0;
char *ghostz = 0;
/* Parse command-line */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_", 3)) {
driver = StringToDriver(argv[i]);
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
DBSetDeprecateWarnings(0);
DBShowErrors(show_all_errors?DB_ALL_AND_DRVR:DB_NONE, NULL);
printf("Creating test file \"%s\".\n", filename);
dbfile = DBCreate(filename, DB_CLOBBER, DB_LOCAL, "test empty silo objects", driver);
ol = DBMakeOptlist(10);
DBAddOption(ol, DBOPT_DTIME, &dtime);
DBAddOption(ol, DBOPT_HIDE_FROM_GUI, &hide_from_gui);
DBAddOption(ol, DBOPT_NODENUM, gnodeno);
DBAddOption(ol, DBOPT_ZONENUM, gzoneno);
DBAddOption(ol, DBOPT_GHOST_NODE_LABELS, ghostn);
DBAddOption(ol, DBOPT_GHOST_ZONE_LABELS, ghostz);
/* first pass confirms we catch bad arguments; second pass confirms we permit empty objects */
for (pass = 0; pass < 2; pass++)
{
const int dt = DB_FLOAT;
const int ct = DB_ZONECENT;
const int ZZ = 0; /* Used for sole arg causing emptiness */
if (pass) DBSetAllowEmptyObjects(1);
/* Because references to the following objects will not ever appear in a
multi-xxx object, we do not currently test for support of empties...
DBPutUcdsubmesh, DBPutMrgtree, DBPutMrgvar, DBPutGroupelmap
Note: 'ZZ' or 'ZDIMS' is the key argument in each call that triggers an empty
*/
/* empty curve objects */
ASSERT(DBPutCurve(dbfile,"empty_curvea",coords[0],coords[0],dt,ZZ,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCurve(dbfile,"empty_curveb", 0,coords[0],dt,ZZ,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCurve(dbfile,"empty_curvec",coords[0], 0,dt,ZZ,OL(ol)),retval<0,retval==0);
/* empty point meshes and vars */
ASSERT(DBPutPointmesh(dbfile,"empty_pointmesha",1,coords,ZZ,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPointmesh(dbfile,"empty_pointmeshb",3, 0,ZZ,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPointvar(dbfile,"pva","empty_pointmesha",1,vars,ZZ,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPointvar(dbfile,"pvb","empty_pointmesha",3, 0,ZZ,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPointvar1(dbfile,"pv1a","empty_pointmesha",var,ZZ,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPointvar1(dbfile,"pv1b","empty_pointmesha", 0,ZZ,dt,OL(ol)),retval<0,retval==0);
/* empty quad meshes and vars (ZDIMS is the magic zero'ing arg) */
ASSERT(DBPutQuadmesh(dbfile,"empty_quadmesha", 0,coords,ZDIMS,1,dt,DB_COLLINEAR,OL(ol)),retval<0,retval==0);
ASSERT(DBPutQuadmesh(dbfile,"empty_quadmeshb",cnames, 0,ZDIMS,2,dt,DB_COLLINEAR,OL(ol)),retval<0,retval==0);
ASSERT(DBPutQuadmesh(dbfile,"empty_quadmeshc",cnames,coords,ZDIMS,3,dt,DB_COLLINEAR,OL(ol)),retval<0,retval==0);
ASSERT(DBPutQuadvar(dbfile,"qva","empty_quadmesha",2, 0,vars,ZDIMS,2,0,0,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutQuadvar(dbfile,"qvb","empty_quadmesha",3,cnames, 0,ZDIMS,3,0,0,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutQuadvar1(dbfile,"qv1a","empty_quadmesha", 0,ZDIMS,ZZ,var,0,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutQuadvar1(dbfile,"qv1b","empty_quadmesha",var,ZDIMS,ZZ, 0,0,dt,ct,OL(ol)),retval<0,retval==0);
/* empty ucd meshes, facelists, zonelists and vars */
ASSERT(DBPutUcdmesh(dbfile,"empty_ucdmesh1",3,cnames,coords,ZZ,1,"foo","bar",dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdmesh(dbfile,"empty_ucdmesh2",1, 0,coords,ZZ,1,"foo","bar",dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdmesh(dbfile,"empty_ucdmesh3",2,cnames, 0,ZZ,0,"foo","bar",dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdmesh(dbfile,"empty_ucdmesh3",0, 0, 0,ZZ,0, 0, 0,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutFacelist(dbfile,"empty_facelista",ZZ,0,iarr,1,1,iarr,iarr,iarr,1,iarr,iarr,1),retval<0,retval==0);
ASSERT(DBPutFacelist(dbfile,"empty_facelistb",ZZ,0, 0,1,1,iarr,iarr,iarr,1,iarr,iarr,1),retval<0,retval==0);
ASSERT(DBPutFacelist(dbfile,"empty_facelistc",ZZ,0,iarr,1,1, 0,iarr,iarr,1,iarr,iarr,1),retval<0,retval==0);
ASSERT(DBPutFacelist(dbfile,"empty_facelistd",ZZ,0,iarr,1,1,iarr, 0,iarr,1,iarr,iarr,1),retval<0,retval==0);
ASSERT(DBPutFacelist(dbfile,"empty_faceliste",ZZ,0,iarr,1,1,iarr,iarr, 0,1,iarr,iarr,1),retval<0,retval==0);
ASSERT(DBPutFacelist(dbfile,"empty_facelistf",ZZ,0,iarr,1,1,iarr,iarr,iarr,1, 0,iarr,1),retval<0,retval==0);
ASSERT(DBPutFacelist(dbfile,"empty_facelistg",ZZ,0,iarr,1,1,iarr,iarr,iarr,1,iarr, 0,1),retval<0,retval==0);
ASSERT(DBPutZonelist(dbfile,"empty_zonelista",ZZ,1,iarr,10,0,iarr,iarr,10),retval<0,retval==0);
ASSERT(DBPutZonelist(dbfile,"empty_zonelistb",ZZ,1, 0,10,0,iarr,iarr,10),retval<0,retval==0);
ASSERT(DBPutZonelist(dbfile,"empty_zonelistc",ZZ,1,iarr,10,0, 0,iarr,10),retval<0,retval==0);
ASSERT(DBPutZonelist(dbfile,"empty_zonelistd",ZZ,1,iarr,10,0,iarr, 0,10),retval<0,retval==0);
ASSERT(DBPutZonelist2(dbfile,"empty_zonelist2a",ZZ,1,iarr,1,0,0,0,iarr,iarr,iarr,1,OL(ol)),retval<0,retval==0);
ASSERT(DBPutZonelist2(dbfile,"empty_zonelist2b",ZZ,0, 0,1,3,3,3,iarr,iarr,iarr,1,OL(ol)),retval<0,retval==0);
ASSERT(DBPutZonelist2(dbfile,"empty_zonelist2c",ZZ,1,iarr,0,3,3,3, 0,iarr,iarr,1,OL(ol)),retval<0,retval==0);
ASSERT(DBPutZonelist2(dbfile,"empty_zonelist2d",ZZ,1,iarr,1,0,3,0,iarr, 0,iarr,0,OL(ol)),retval<0,retval==0);
ASSERT(DBPutZonelist2(dbfile,"empty_zonelist2e",ZZ,1,iarr,1,3,0,0,iarr,iarr, 0,1,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPHZonelist(dbfile,"empty_phzonelista",ZZ,iarr,1,iarr,cnames[0],1,iarr,1,iarr,0,0,0,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPHZonelist(dbfile,"empty_phzonelistb",ZZ, 0,1,iarr,cnames[0],1,iarr,1,iarr,0,0,0,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPHZonelist(dbfile,"empty_phzonelistc",ZZ,iarr,1, 0,cnames[0],1,iarr,1,iarr,0,0,0,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPHZonelist(dbfile,"empty_phzonelistd",ZZ,iarr,1,iarr, 0,1,iarr,1,iarr,0,0,0,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPHZonelist(dbfile,"empty_phzoneliste",ZZ,iarr,1,iarr,cnames[0],1, 0,1,iarr,0,0,0,OL(ol)),retval<0,retval==0);
ASSERT(DBPutPHZonelist(dbfile,"empty_phzonelistf",ZZ,iarr,1,iarr,cnames[0],1,iarr,1, 0,0,0,0,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdvar(dbfile,"uva","empty_ucdmesh1",0,cnames,vars,ZZ,vars,1,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdvar(dbfile,"uvb","empty_ucdmesh1",1, 0,vars,ZZ,vars,1,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdvar(dbfile,"uvc","empty_ucdmesh1",2,cnames, 0,ZZ,vars,1,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdvar(dbfile,"uvd","empty_ucdmesh1",3,cnames,vars,ZZ, 0,1,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdvar(dbfile,"uve","empty_ucdmesh1",3, 0, 0,ZZ, 0,1,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdvar1(dbfile,"uv1a","empty_ucdmesh1",var,ZZ,vars[0],1,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdvar1(dbfile,"uv1b","empty_ucdmesh1", 0,ZZ,vars[0],1,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdvar1(dbfile,"uv1c","empty_ucdmesh1",var,ZZ, 0,1,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutUcdvar1(dbfile,"uv1d","empty_ucdmesh1", 0,ZZ, 0,1,dt,ct,OL(ol)),retval<0,retval==0);
/* csg meshes and vars */
ASSERT(DBPutCsgmesh(dbfile,"empty_csgmesh1",2,ZZ, 0,iarr,var,1,dt,exts,"foo",OL(ol)),retval<0,retval==0);
ASSERT(DBPutCsgmesh(dbfile,"empty_csgmesh2",2,ZZ,iarr, 0,var,2,dt,exts,"foo",OL(ol)),retval<0,retval==0);
ASSERT(DBPutCsgmesh(dbfile,"empty_csgmesh3",3,ZZ,iarr,iarr, 0,3,dt,exts,"foo",OL(ol)),retval<0,retval==0);
ASSERT(DBPutCsgmesh(dbfile,"empty_csgmesh4",3,ZZ,iarr,iarr,var,0,dt,exts,"foo",OL(ol)),retval<0,retval==0);
ASSERT(DBPutCSGZonelist(dbfile,"empty_csgzonelista",0,iarr,iarr,iarr,0,0,dt,ZZ,iarr,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCSGZonelist(dbfile,"empty_csgzonelistb",1, 0,iarr,iarr,0,0,dt,ZZ,iarr,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCSGZonelist(dbfile,"empty_csgzonelistc",1,iarr, 0,iarr,0,0,dt,ZZ,iarr,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCSGZonelist(dbfile,"empty_csgzonelistd",1,iarr,iarr, 0,0,0,dt,ZZ,iarr,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCSGZonelist(dbfile,"empty_csgzoneliste",1,iarr,iarr,iarr,0,0,dt,ZZ, 0,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCsgvar(dbfile,"csgva","empty_csgmesh1",0,cnames,vvars,ZZ,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCsgvar(dbfile,"csgvb","empty_csgmesh1",1, 0,vvars,ZZ,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCsgvar(dbfile,"csgvc","empty_csgmesh1",1,cnames, 0, ZZ,dt,ct,OL(ol)),retval<0,retval==0);
ASSERT(DBPutCsgvar(dbfile,"csgvd","empty_csgmesh1",1,cnames,vvars,ZZ,dt,ct,OL(ol)),retval<0,retval==0);
/* empty materials and species */
ASSERT(DBPutMaterial(dbfile,"empty_mata","foo",1,iarr,iarr,ZDIMS,1,iarr,iarr,iarr,vars[0],1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMaterial(dbfile,"empty_matb","foo",1, 0,iarr,ZDIMS,1,iarr,iarr,iarr,vars[0],1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMaterial(dbfile,"empty_matc","foo",1,iarr, 0,ZDIMS,1,iarr,iarr,iarr,vars[0],1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMaterial(dbfile,"empty_matd","foo",1,iarr,iarr,ZDIMS,1, 0,iarr,iarr,vars[0],1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMaterial(dbfile,"empty_mate","foo",1,iarr,iarr,ZDIMS,1,iarr, 0,iarr,vars[0],1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMaterial(dbfile,"empty_matf","foo",1,iarr,iarr,ZDIMS,1,iarr,iarr, 0,vars[0],1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMaterial(dbfile,"empty_matg","foo",1,iarr,iarr,ZDIMS,1,iarr,iarr,iarr, 0,1,dt,OL(ol)),retval<0,retval==0);
/* empty matspecies via dims[i] == 0 */
ASSERT(DBPutMatspecies(dbfile,"empty_speca","empty_mata",1,iarr,iarr,ZDIMS,1,1,var,iarr,1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMatspecies(dbfile,"empty_specb","empty_mata",1,iarr,iarr,ZDIMS,2,1,var,iarr,1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMatspecies(dbfile,"empty_specc","empty_mata",1,iarr,iarr,ZDIMS,3,1,var,iarr,1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMatspecies(dbfile,"empty_specd","empty_mata",1,iarr,iarr,ZDIMS,1,1, 0,iarr,1,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMatspecies(dbfile,"empty_spece","empty_mata",1,iarr,iarr,ZDIMS,1,1,var, 0,0,dt,OL(ol)),retval<0,retval==0);
/* empty matspeces via nspecies_mf==0 */
{ int nd=2, d[2]={3,2}, slm[6]={0,0,-1,-3,0,0}, ml=4, msl[4]={1,2,1,2}, slc[6]={0,0,0,0,0,0};
ASSERT(DBPutMatspecies(dbfile,"empty_specf","empty_mata",1,iarr,slc,d,nd,ZZ,var, 0, 0,dt,OL(ol)),retval<0,retval==0);
ASSERT(DBPutMatspecies(dbfile,"empty_specg","empty_mata",1,iarr,slm,d,nd,ZZ,var,msl,ml,dt,OL(ol)),retval<0,retval==0);
}
}
DBClose(dbfile);
dbfile = 0;
/* Ok, now try to read each empty object to make sure we get what we expect and nothing fails */
dbfile = DBOpen(filename, DB_UNKNOWN, DB_READ);
/* test read back of empty curves */
{ int i=0; char *cnames[] = {"empty_curvea", "empty_curveb", "empty_curvec", 0};
DBSetDir(dbfile, "DBPutCurve");
while (cnames[i])
{
DBcurve *curve = DBGetCurve(dbfile, cnames[i++]);
assert(DBIsEmptyCurve(curve));
DBFreeCurve(curve);
}
DBSetDir(dbfile, "..");
}
/* test read back of empty point meshes and vars */
{ int i=0; char *pmnames[] = {"empty_pointmesha", "empty_pointmeshb", 0};
DBSetDir(dbfile, "DBPutPointmesh");
while (pmnames[i])
{
DBpointmesh *pointmesh = DBGetPointmesh(dbfile, pmnames[i++]);
assert(DBIsEmptyPointmesh(pointmesh));
DBFreePointmesh(pointmesh);
}
DBSetDir(dbfile, "..");
}
{ int i=0; char *vnames[] = {"pva", "pvb", "pv1a", "pv1b", 0};
DBSetDir(dbfile, "DBPutPointvar");
while (vnames[i])
{
DBpointvar *pointvar = DBGetPointvar(dbfile, vnames[i++]);
assert(DBIsEmptyPointvar(pointvar));
DBFreePointvar(pointvar);
}
DBSetDir(dbfile, "..");
}
/* test read back of empty quad meshes and vars */
{ int i=0; char *qmnames[] = {"empty_quadmesha", "empty_quadmeshb", "empty_quadmeshc", 0};
DBSetDir(dbfile, "DBPutQuadmesh");
while (qmnames[i])
{
DBquadmesh *quadmesh = DBGetQuadmesh(dbfile, qmnames[i++]);
assert(DBIsEmptyQuadmesh(quadmesh));
DBFreeQuadmesh(quadmesh);
}
DBSetDir(dbfile, "..");
}
{ int i=0; char *vnames[] = {"qva" , "qvb", "qv1a", "qv1b", 0};
DBSetDir(dbfile, "DBPutQuadvar");
while (vnames[i])
{
DBquadvar *quadvar = DBGetQuadvar(dbfile, vnames[i++]);
assert(DBIsEmptyQuadvar(quadvar));
DBFreeQuadvar(quadvar);
}
DBSetDir(dbfile, "..");
}
/* test read back of empty ucd meshes, zonelists and vars */
{ int i=0; char *mnames[] = {"empty_ucdmesh1", "empty_ucdmesh2", "empty_ucdmesh3", 0};
DBSetDir(dbfile, "DBPutUcdmesh");
while (mnames[i])
{
DBucdmesh *ucdmesh = DBGetUcdmesh(dbfile, mnames[i++]);
assert(DBIsEmptyUcdmesh(ucdmesh));
DBFreeUcdmesh(ucdmesh);
}
DBSetDir(dbfile, "..");
}
{ int i=0; char *flnames[] = {"empty_facelista", "empty_facelistb",
"empty_facelistc", "empty_facelistd",
"empty_faceliste", "empty_facelistf",
"empty_facelistg", 0};
DBSetDir(dbfile, "DBPutFacelist");
while (flnames[i])
{
DBfacelist *fl = DBGetFacelist(dbfile, flnames[i++]);
assert(DBIsEmptyFacelist(fl));
DBFreeFacelist(fl);
}
DBSetDir(dbfile, "..");
}
{ int i=0; char *zlnames[] = {"empty_zonelista", "empty_zonelistb",
"empty_zonelistc", "empty_zonelistd",
"empty_zonelist2a", "empty_zonelist2b",
"empty_zonelist2c", "empty_zonelist2d",
"empty_zonelist2e", 0};
DBSetDir(dbfile, "DBPutZonelist");
while (zlnames[i])
{
DBzonelist *zl = DBGetZonelist(dbfile, zlnames[i++]);
assert(DBIsEmptyZonelist(zl));
DBFreeZonelist(zl);
}
DBSetDir(dbfile, "..");
}
{ int i=0; char *zlnames[] = {"empty_phzonelista", "empty_phzonelistb",
"empty_phzonelistc", "empty_phzonelistd",
"empty_phzoneliste", "empty_phzonelistf", 0};
DBSetDir(dbfile, "DBPutPHZonelist");
while (zlnames[i])
{
DBphzonelist *zl = DBGetPHZonelist(dbfile, zlnames[i++]);
assert(DBIsEmptyPHZonelist(zl));
DBFreePHZonelist(zl);
}
DBSetDir(dbfile, "..");
}
{ int i=0; char *vnames[] = { "uva", "uvb", "uvc",
"uvd", "uve", "uv1a",
"uv1b", "uv1c", "uv1d", 0};
DBSetDir(dbfile, "DBPutUcdvar");
while (vnames[i])
{
DBucdvar *ucdvar = DBGetUcdvar(dbfile, vnames[i++]);
assert(DBIsEmptyUcdvar(ucdvar));
DBFreeUcdvar(ucdvar);
}
DBSetDir(dbfile, "..");
}
/* test read back of empty csg meshes and vars */
{ int i=0; char *mnames[] = {"empty_csgmesh1", "empty_csgmesh2", "empty_csgmesh3", 0};
DBSetDir(dbfile, "DBPutCsgmesh");
while (mnames[i])
{
DBcsgmesh *csgmesh = DBGetCsgmesh(dbfile, mnames[i++]);
assert(DBIsEmptyCsgmesh(csgmesh));
DBFreeCsgmesh(csgmesh);
}
DBSetDir(dbfile, "..");
}
{ int i=0; char *zlnames[] = {"empty_csgzonelista", "empty_csgzonelistb",
"empty_csgzonelistc", "empty_csgzonelistd",
"empty_csgzoneliste", 0};
DBSetDir(dbfile, "DBPutCSGZonelist");
while (zlnames[i])
{
DBcsgzonelist *zl = DBGetCSGZonelist(dbfile, zlnames[i++]);
assert(DBIsEmptyCSGZonelist(zl));
DBFreeCSGZonelist(zl);
}
DBSetDir(dbfile, "..");
}
{ int i=0; char *vnames[] = {"csgva", "csgvb", "csgvc", "csgvd", 0};
DBSetDir(dbfile, "DBPutCsgvar");
while (vnames[i])
{
DBcsgvar *csgvar = DBGetCsgvar(dbfile, vnames[i++]);
assert(DBIsEmptyCsgvar(csgvar));
DBFreeCsgvar(csgvar);
}
DBSetDir(dbfile, "..");
}
/* test read back of empty materials and matspecies */
{ int i=0; char *vnames[] = {"empty_mata", "empty_matb", "empty_matc", "empty_matd",
"empty_mate", "empty_matf", "empty_matg", 0};
DBSetDir(dbfile, "DBPutMaterial");
while (vnames[i])
{
DBmaterial *mat = DBGetMaterial(dbfile, vnames[i++]);
assert(DBIsEmptyMaterial(mat));
DBFreeMaterial(mat);
}
DBSetDir(dbfile, "..");
}
{ int i=0; char *vnames[] = {"empty_speca", "empty_specb", "empty_specc",
"empty_specd", "empty_spece", "empty_specf",
"empty_specg", 0};
DBSetDir(dbfile, "DBPutMatspecies");
while (vnames[i])
{
DBmatspecies *spec = DBGetMatspecies(dbfile, vnames[i++]);
assert(DBIsEmptyMatspecies(spec));
DBFreeMatspecies(spec);
}
DBSetDir(dbfile, "..");
}
DBClose(dbfile);
CleanupDriverStuff();
return 0;
}
/*----------------------------------------------------------------------------
*----------------------------------------------------------------------------
* Main Program
*----------------------------------------------------------------------------
*----------------------------------------------------------------------------
* Modifications:
* Robb Matzke, 1999-04-09
* Added argument parsing to control the driver which is used.
*
*---------------------------------------------------------------------------*/
int main(int argc, char *argv[]) {
int x,y;
int m,s;
int err, mixc;
int i, driver=DB_PDB, reorder=0;
char filename[64], *file_ext=".pdb";
int show_all_errors = FALSE;
DBfile *db;
/* Parse command-line */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB", 6)) {
driver = StringToDriver(argv[i]);
file_ext = ".pdb";
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
file_ext = ".h5";
} else if (!strcmp(argv[i], "reorder")) {
reorder = 1;
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (!strcmp(argv[i], "difftol")) {
difftol = strtod(argv[i+1], 0);
i++;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
if (show_all_errors) DBShowErrors(DB_ALL_AND_DRVR, 0);
Mesh_Create(&mesh,20,20);
/* -=-=-=-=-=-=-=-=-=- */
/* Setup Coordinates */
/* -=-=-=-=-=-=-=-=-=- */
printf("Creating the mesh\n");
for (x=0;x<mesh.nx;x++) {
for (y=0;y<mesh.ny;y++) {
float xx = (x-10);
float yy = ((xx-8.5)*xx*(xx+8.5))/40. + (y-10);
mesh.node[x][y].x = xx*2+(yy*yy/50 - 3);
mesh.node[x][y].y = yy;
}
}
/* -=-=-=-=-=-=-=-=-=- */
/* Do Mesh Variables */
/* -=-=-=-=-=-=-=-=-=- */
printf("Creating the variables\n");
/* do zone vars */
for (x=0;x<mesh.zx;x++) {
for (y=0;y<mesh.zy;y++) {
mesh.zone[x][y].vars[ZV_P] = sqrt((mesh.node[x][y].x*mesh.node[x][y].x) +
(mesh.node[x][y].y*mesh.node[x][y].y));
mesh.zone[x][y].vars[ZV_D] = 10. / (mesh.zone[x][y].vars[ZV_P]+5);
}
}
/* do node vars */
for (x=0;x<mesh.nx;x++) {
for (y=0;y<mesh.ny;y++) {
mesh.node[x][y].vars[NV_U] = mesh.node[x][y].x;
mesh.node[x][y].vars[NV_V] = mesh.node[x][y].y;
}
}
/* -=-=-=-=-=-=-=-=-=- */
/* Do Materials */
/* -=-=-=-=-=-=-=-=-=- */
printf("Overlaying materials\n");
/* initialize */
for (x=0;x<mesh.zx;x++) {
for (y=0;y<mesh.zy;y++) {
mesh.zone[x][y].nmats=0;
}
}
/* do it */
for (m=1; m<=nmat; m++) {
for (x=0;x<mesh.zx;x++) {
for (y=0;y<mesh.zy;y++) {
float x00=mesh.zone[x][y].n[0][0]->x;
float y00=mesh.zone[x][y].n[0][0]->y;
float x10=mesh.zone[x][y].n[1][0]->x;
float y10=mesh.zone[x][y].n[1][0]->y;
float x01=mesh.zone[x][y].n[0][1]->x;
float y01=mesh.zone[x][y].n[0][1]->y;
float x11=mesh.zone[x][y].n[1][1]->x;
float y11=mesh.zone[x][y].n[1][1]->y;
int i,j;
int c=0;
float vf=0.;
double vfd=0.;
const int RES=40; /* subsampling resolution */
/* Subsample the zone at RESxRES to *
* get a more accurate volume fraction */
for (i=0;i<=RES;i++) {
for (j=0;j<=RES;j++) {
float ii=(float)i/(float)RES;
float jj=(float)j/(float)RES;
float xc = (x00*ii + x10*(1.-ii))*jj +
(x01*ii + x11*(1.-ii))*(1.-jj);
float yc = (y00*ii + y10*(1.-ii))*jj +
(y01*ii + y11*(1.-ii))*(1.-jj);
switch (m) {
case 1:
if (xc>-15 && yc>2) vf++;
break;
case 2:
if (xc>-15 && yc<=2 && xc-5>yc) vf++;
break;
case 3:
if (xc>-15 && yc<=2 && xc-5<=yc) vf++;
break;
case 4:
if (xc<= -15) vf++;
break;
default:
break;
}
c++;
}
}
vfd = vf;
vf /= (float)c;
vfd /= (double)c;
mesh.zone[x][y].matvf[m]=vf;
mesh.zone[x][y].matvfd[m]=vfd;
if (vf)
mesh.zone[x][y].nmats++;
}
}
}
/* check for errors in mat-assigning code! */
err=0;
for (x=0;x<mesh.zx;x++) {
for (y=0;y<mesh.zy;y++) {
float vf=0;
for (m=1; m<=nmat; m++) {
vf += mesh.zone[x][y].matvf[m];
}
if (vf<.99 || vf>1.01) {
printf("Error in zone x=%d y=%d: vf = %f\n",x,y,vf);
err++;
}
}
}
if (err) exit(err);
/* -=-=-=-=-=-=-=-=-=- */
/* do species stuff! */
/* -=-=-=-=-=-=-=-=-=- */
printf("Overlaying material species\n");
err=0;
for (m=1;m<=nmat;m++) {
for (x=0;x<mesh.zx;x++) {
for (y=0;y<mesh.zy;y++) {
if (mesh.zone[x][y].matvf[m]>0.) {
float mftot=0.;
for (s=0; s<nspec[m-1]; s++) {
float x00=mesh.zone[x][y].n[0][0]->x;
float y00=mesh.zone[x][y].n[0][0]->y;
float x10=mesh.zone[x][y].n[1][0]->x;
float y10=mesh.zone[x][y].n[1][0]->y;
float x01=mesh.zone[x][y].n[0][1]->x;
float y01=mesh.zone[x][y].n[0][1]->y;
float x11=mesh.zone[x][y].n[1][1]->x;
float y11=mesh.zone[x][y].n[1][1]->y;
float xx=(x00+x10+x01+x11)/4.;
float yy=(y00+y10+y01+y11)/4.;
double xxd=(x00+x10+x01+x11)/4.;
double yyd=(y00+y10+y01+y11)/4.;
float mf=0.;
double mfd=0.;
float g,g1,g2; /* gradient values */
double gd,g1d,g2d; /* gradient values */
switch (m) {
case 1:
g=lim01((xx+20.)/40.);
gd=lim01((xxd+20.)/40.);
switch (s) {
case 0: mf=g; mfd=gd; break;
case 1: mf=1.-g; mfd=1.-gd; break;
default: exit(-1);
}
break;
case 2:
g=lim01((yy+20.)/40.);
gd=lim01((yyd+20.)/40.);
switch (s) {
case 0: mf=.2+g/2.; mfd=.2+gd/2.; break;
case 1: mf=.5-g/2.; mfd=.5-gd/2.; break;
case 2: mf=.2; mfd=.2; break;
case 3: mf=.1; mfd=.1; break;
default: exit(-1);
}
break;
case 3:
g1=lim01((xx-5+yy+40.)/80.);
g2=lim01((xx-5-yy+40.)/80.);
g1d=lim01((xxd-5+yyd+40.)/80.);
g2d=lim01((xxd-5-yyd+40.)/80.);
switch (s) {
case 0: mf=g1/2.; mfd=g1d/2.; break;
case 1: mf=g2/4.; mfd=g2d/4.; break;
case 2: mf=.5-g1/2.; mfd=.5-g1d/2.; break;
case 3: mf=.25-g2/4.; mfd=.25-g2d/4.; break;
case 4: mf=.25; mfd=.25; break;
default: exit(-1);
}
break;
case 4:
switch (s) {
case 0: mf=1.0; mfd=1.0; break;
default: exit(-1);
}
break;
default:
exit(-1);
break;
}
mesh.zone[x][y].specmf[m][s] = mf;
mesh.zone[x][y].specmfd[m][s] = mfd;
mftot += mf;
}
if (mftot < .99 || mftot > 1.01) {
printf("Error in zone x=%d y=%d mat=%d: mf = %f\n",x,y,m,mftot);
err++;
}
}
}
}
}
if (err) exit(err);
/* -=-=-=-=-=-=-=-=-=- */
/* write to silo files */
/* -=-=-=-=-=-=-=-=-=- */
sprintf(filename, "specmix_quad%s", file_ext);
printf("Writing %s using curvilinear mesh.\n", filename);
db=DBCreate(filename, DB_CLOBBER, DB_LOCAL, "Mixed zone species test", driver);
mixc=domatspec(db, doWrite, 0);
writemesh_curv2d(db,mixc,reorder);
DBClose(db);
sprintf(filename, "specmix_ucd%s", file_ext);
printf("Writing %s using unstructured mesh.\n", filename);
db=DBCreate(filename, DB_CLOBBER, DB_LOCAL, "Mixed zone species test", driver);
mixc=domatspec(db, doWrite, 0);
writemesh_ucd2d(db,mixc,reorder);
DBClose(db);
/* Test read-back of species */
printf("Reading %s with Force Single off.\n", filename);
db=DBOpen(filename, driver, DB_READ);
domatspec(db, doReadAndCheck, 0);
DBClose(db);
printf("Reading %s with Force Single ON.\n", filename);
DBForceSingle(1);
db=DBOpen(filename, driver, DB_READ);
domatspec(db, doReadAndCheck, 1);
DBClose(db);
printf("Done!\n");
for (x=0;x<mesh.nx;x++)
free(mesh.node[x]);
free(mesh.node);
for (x=0;x<mesh.zx;x++)
free(mesh.zone[x]);
free(mesh.zone);
CleanupDriverStuff();
return 0;
}
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose:
*
* Return: 0
*
* Programmer:
* Thomas R. Treadway, Mon Mar 12 14:13:51 PDT 2007
* Test of HDF5 compression.
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
main(int argc, char *argv[])
{
int nerrors = 0;
int verbose = 0;
int usefloat = 0;
int readonly = 0;
int i, j, ndims=1;
int fdims[]= {ONE_MEG/sizeof(float)};
int ddims[]= {ONE_MEG/sizeof(double)};
float *fval;
float *frval;
double *dval;
double *drval;
int driver=DB_HDF5;
char *filename="compression.h5";
char *ptr;
char tmpname[64];
DBfile *dbfile;
#if !defined(_WIN32)
struct timeval tim;
double t1, t2;
#endif
struct stat buffer;
off_t fsize;
int has_loss = 0;
int show_errors = DB_TOP;
/* Parse command-line */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB",6)) {
fprintf(stderr, "This test only supported on HDF5 driver\n");
exit(1);
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
filename = "compression.h5";
} else if (!strcmp(argv[i], "compress")) {
if ((i+1<argc) && ((ptr=strstr(argv[i+1], "METHOD=")) != NULL))
{
DBSetCompression(argv[i+1]);
i++;
}
else
DBSetCompression("METHOD=GZIP");
} else if (!strcmp(argv[i], "szip")) {
DBSetCompression("METHOD=SZIP");
} else if (!strcmp(argv[i], "gzip")) {
DBSetCompression("METHOD=GZIP");
} else if (!strcmp(argv[i], "fpzip")) {
DBSetCompression("METHOD=FPZIP");
} else if (!strcmp(argv[i], "single")) {
usefloat = 1;
} else if (!strcmp(argv[i], "verbose")) {
verbose = 1;
} else if (!strcmp(argv[i], "lossy1")) {
DBSetCompression("METHOD=FPZIP LOSS=1");
has_loss = 1;
} else if (!strcmp(argv[i], "lossy2")) {
DBSetCompression("METHOD=FPZIP LOSS=2");
has_loss = 1;
} else if (!strcmp(argv[i], "lossy3")) {
DBSetCompression("METHOD=FPZIP LOSS=3");
has_loss = 1;
} else if (!strcmp(argv[i], "minratio1000")) {
DBSetCompression("ERRMODE=FAIL MINRATIO=1000 METHOD=FPZIP");
} else if (!strcmp(argv[i], "minratio1001")) {
DBSetCompression("ERRMODE=FALLBACK MINRATIO=1000 METHOD=FPZIP");
} else if (!strcmp(argv[i], "readonly")) {
readonly = 1;
} else if (!strcmp(argv[i], "help")) {
printf("Usage: %s [compress [\"METHOD=...\"]|single|verbose|readonly]\n",argv[0]);
printf("Where: compress - enables compression, followed by compression information string\n");
printf(" default is compress \"METHOD=GZIP LEVEL=1\"\n");
printf(" single - writes data as floats not doubles\n");
printf(" verbose - displays more feedback\n");
printf(" readonly - checks an existing file (used for cross platform test)\n");
printf(" DB_HDF5 - enable HDF5 driver, the default\n");
return (0);
} else if (!strcmp(argv[i], "show-all-errors")) {
show_errors = DB_ALL_AND_DRVR;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
/* get some temporary memory */
fval = (float*) malloc(ONE_MEG);
frval = (float*) malloc(ONE_MEG);
dval = (double*) malloc(ONE_MEG);
drval = (double*) malloc(ONE_MEG);
DBShowErrors(show_errors, 0);
if (!readonly)
{
/*
* Create a file that contains a simple variables.
*/
if (verbose)
printf("Creating file: `%s'\n", filename);
dbfile = DBCreate(filename, 0, DB_LOCAL, "Compression Test", driver);
#if !defined(_WIN32)
gettimeofday(&tim, NULL);
t1=tim.tv_sec+(tim.tv_usec/1000000.0);
#endif
if (usefloat)
{
for (j = 0; j < INTERATE; j++)
{
if (verbose)
if (j % 100 == 0)
printf("Iterations %04d to %04d of %04d\n", j,j+100-1,INTERATE);
sprintf(tmpname, "compression_%04d", j);
for (i = 0; i < fdims[0]; i++)
fval[i] = (float) fdims[0] * j + i;
if (DBWrite(dbfile, tmpname, fval, fdims, ndims, DB_FLOAT) < 0)
{
nerrors++;
break;
}
}
}
else
{
for (j = 0; j < INTERATE; j++)
{
if (verbose)
if (j % 100 == 0)
printf("Iterations %04d to %04d of %04d\n",j,j+100-1,INTERATE);
sprintf(tmpname, "compression_%04d", j);
for (i = 0; i < ddims[0]; i++)
dval[i] = (double) ddims[0] * j + i;
if (DBWrite(dbfile, tmpname, dval, ddims, ndims, DB_DOUBLE) < 0)
{
nerrors++;
break;
}
}
}
#if !defined(_WIN32)
gettimeofday(&tim, NULL);
t2=tim.tv_sec+(tim.tv_usec/1000000.0);
stat(filename, &buffer);
fsize = buffer.st_size;
printf("Write took %.6lf seconds and %.6g bytes/second\n",
t2-t1,fsize/(t2-t1));
#endif
DBClose(dbfile);
}
else
{
stat(filename, &buffer);
fsize = buffer.st_size;
}
if (nerrors)
return nerrors;
/*
* Now try opening the file again and verify the simple
* variable.
*/
if (verbose)
printf("Reopening `%s'\n", filename);
dbfile = DBOpen(filename, driver, DB_READ);
if (dbfile == 0)
{
printf("Unable to Open file for reading\n");
exit(1);
}
#if !defined(_WIN32)
gettimeofday(&tim, NULL);
t1=tim.tv_sec+(tim.tv_usec/1000000.0);
#endif
if (usefloat)
{
for (j = 0; j < INTERATE; j++)
{
if (verbose)
if (j % 100 == 0)
printf("Iterations %04d to %04d of %04d\n", j,j+100-1,INTERATE);
sprintf(tmpname, "compression_%04d", j);
if (DBReadVar(dbfile, tmpname, frval) < 0)
{
if (!has_loss) nerrors++;
if (!has_loss && nerrors <= 10) printf("DBReadVar for \"%s\" failed\n", tmpname);
if (!has_loss && nerrors == 10) printf("Further errors will be suppressed\n");
}
for (i = 0; i < fdims[0]; i++)
{
fval[i] = (float) fdims[0] * j + i;
if (fval[i] != frval[i])
{
if (!has_loss) nerrors++;
if (!has_loss && nerrors <= 10)
printf("Read error in \"%s\" at position %04d. Expected %f, got %f\n",
tmpname, i, fval[i], frval[i]);
if (!has_loss && nerrors == 10) printf("Further errors will be suppressed\n");
break;
}
}
}
}
else
{
for (j = 0; j < INTERATE; j++)
{
if (verbose)
if (j % 100 == 0)
printf("Iterations %04d to %04d of %04d\n",j,j+100-1,INTERATE);
sprintf(tmpname, "compression_%04d", j);
if (DBReadVar(dbfile, tmpname, drval) < 0)
{
if (!has_loss) nerrors++;
if (!has_loss && nerrors <= 10) printf("DBReadVar for \"%s\" failed\n", tmpname);
if (!has_loss && nerrors == 10) printf("Further errors will be suppressed\n");
}
for (i = 0; i < ddims[0]; i++)
{
dval[i] = (double) ddims[0] * j + i;
if (dval[i] != drval[i])
{
if (!has_loss) nerrors++;
if (!has_loss && nerrors <= 10)
printf("Read error in \"%s\" at position %04d. Expected %f, got %f\n",
tmpname, i, dval[i], drval[i]);
if (!has_loss && nerrors == 10) printf("Further errors will be suppressed\n");
break;
}
}
}
}
#if !defined(_WIN32)
gettimeofday(&tim, NULL);
t2=tim.tv_sec+(tim.tv_usec/1000000.0);
printf("Read took %.6lf seconds and %.6g bytes/second\n",
t2-t1,fsize/(t2-t1));
#endif
DBClose(dbfile);
free(fval);
free(frval);
free(dval);
free(drval);
CleanupDriverStuff();
return nerrors;
}
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose:
*
* Return: 0
*
* Programmer:
*
* Modifications:
* Robb Matzke, 1999-04-09
* Added argument parsing to control the driver which is used.
*
* Mark C. Miller, Mon Sep 21 15:20:30 PDT 2009
* Added code to test long long type.
*
* Mark C. Miller, Wed Sep 23 11:57:24 PDT 2009
* Added logic to test DBInqFile.
*
* Mark C. Miller, Fri Nov 13 15:40:35 PST 2009
* Test long long on PDB driver too.
*-------------------------------------------------------------------------
*/
int
main(int argc, char *argv[])
{
int i, j, k;
int ndims, dims[3];
float val[NX * NY * NZ];
long long lval[NX * NY * NZ];
int offset[3], length[3], stride[3];
float val2[NX * NY * NZ];
long long *lval2 = 0;
int cnt, driver=DB_PDB;
char *filename="simple.pdb";
int k1, k2;
int err = 0;
int inqval;
DBfile *dbfile;
int show_all_errors = FALSE;
/* Parse command-line */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB", 6)) {
driver = StringToDriver(argv[i]);
filename = "simple.pdb";
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
filename = "simple.h5";
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
DBShowErrors(show_all_errors?DB_ALL_AND_DRVR:DB_TOP, NULL);
DBForceSingle(1);
/*
* Build a simple variables.
*/
ndims = 3;
dims[0] = NZ;
dims[1] = NY;
dims[2] = NX;
for (k = 0; k < NZ; k++) {
for (j = 0; j < NY; j++) {
for (i = 0; i < NX; i++) {
val[i + j * NX + k * NX * NY] = i + j * NX + k * NX * NY;
lval[i + j * NX + k * NX * NY] = ((long long) 1 << 35) + i + j * NX + k * NX * NY;
}
}
}
/* Test InqFile on a PDB (but not Silo) file */
if (driver == DB_PDB)
inqval = DBInqFile("not_a_silo_file.pdb");
else
inqval = DBInqFile("not_a_silo_file.h5");
if (inqval < 0)
{
fprintf(stderr, "Error in InqFile attempting to identify not_a_silo_file");
err = 1;
}
else if (inqval > 0)
{
fprintf(stderr, "InqFile incorrectly identified not_a_silo_file");
err = 1;
}
/* Create empty silo file to test InqFile */
dbfile = DBCreate(filename, 0, DB_LOCAL, "Empty Silo File", driver);
DBClose(dbfile);
if (DBInqFile(filename) <= 0)
{
fprintf(stderr, "InqFile says file created via DBCreate is NOT a silo file");
err = 1;
}
unlink(filename);
/*
* Create a file that contains a simple variables.
*/
printf("Creating file: `%s'\n", filename);
dbfile = DBCreate(filename, 0, DB_LOCAL, "Simple Test", driver);
DBWrite(dbfile, "simple", val, dims, ndims, DB_FLOAT);
DBWrite(dbfile, "longlong", lval, dims, ndims, DB_LONG_LONG);
DBClose(dbfile);
/*
* Now try opening the file again and reading the simple
* variable.
*/
printf("Reopening `%s'\n", filename);
dbfile = DBOpen(filename, driver, DB_READ);
offset[0] = 0;
offset[1] = 0;
offset[2] = 0;
length[0] = NZ2;
length[1] = NY2;
length[2] = NX2;
stride[0] = 1;
stride[1] = 1;
stride[2] = 1;
for (i = 0; i < NX * NY * NZ; i++)
val2[i] = 0;
DBReadVarSlice(dbfile, "simple", offset, length, stride, ndims, val2);
lval2 = DBGetVar(dbfile, "longlong");
DBClose(dbfile);
/*
* Check the data.
*/
cnt = 0;
for (k = 0; k < NZ2; k++) {
for (j = 0; j < NY2; j++) {
for (i = 0; i < NX2; i++) {
if (val2[i + j * NX2 + k * NX2 * NY2] != val[i + j * NX + k * NX * NY])
cnt++;
}
}
}
err += cnt;
printf("%d values don't match\n", cnt);
cnt = 0;
k1 = NX2 * NY2 * NZ2;
k2 = NX * NY * NZ;
for (i = k1; i < k2; i++)
if (val2[i] != 0)
cnt++;
printf("%d values were overwritten\n", cnt);
cnt = 0;
for (k = 0; k < NZ && lval2; k++) {
for (j = 0; j < NY; j++) {
for (i = 0; i < NX; i++) {
if (lval2[i + j * NX + k * NX * NY] != lval[i + j * NX + k * NX * NY])
cnt++;
}
}
}
err += cnt;
printf("%d long long values don't match\n", cnt);
if (lval2) free(lval2);
CleanupDriverStuff();
return err;
}
int main(int argc, char **argv)
{
float x[1000],y[1000],z[1000];
float *coords[3];
int nodelist[2000];
int zoneno[1000];
int shapetype[1] = {DB_ZONETYPE_BEAM};
int shapesize[1] = {2};
int shapecnt[1]; /* fill this in later after we count the zones */
int nzones = 0;
int nnodes = 0;
int l;
float zval[1000];
float nval[1000];
DBfile *db;
int i,j, driver = DB_PDB, reorder = 0, friendly = 0;
char *filename = "ucd1d.pdb";
int show_all_errors = FALSE;
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB", 6)) {
driver = StringToDriver(argv[i]);
filename = "ucd1d.pdb";
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
filename = "ucd1d.h5";
} else if (!strcmp(argv[i], "reorder")) {
reorder = 1;
} else if (!strcmp(argv[i], "friendly")) {
friendly = 1;
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
if (show_all_errors) DBShowErrors(DB_ALL_AND_DRVR, 0);
/* Create the coordinate arrays and the nodal variable */
for (i=0; i<30; i++)
{
for (j=0; j<=30; j++)
{
x[i*31+j] = (float)i-14.5;
y[i*31+j] = sin(2*M_PI*(float)j/30)*5;
z[i*31+j] = cos(2*M_PI*(float)j/30)*5;
nval[nnodes] = sqrt(x[i*31+j]*x[i*31+j]*.2 +
y[i*31+j]*y[i*31+j]*.5 +
z[i*31+j]*z[i*31+j]*1.);
nnodes++;
}
}
if (reorder)
{
float tmp = nval[0];
nval[0] = nval[1];
nval[1] = tmp;
}
coords[0]=x;
coords[1]=y;
coords[2]=z;
/* Create the connectivity arrays and teh zonal variable */
l=0;
for (i=0; i<30; i++)
{
for (j=0; j<30; j++)
{
if (! (abs(i-j)<5 || abs(i-j+30)<5 || abs(i-j-30)<5))
{
nodelist[l++] = (i*31 + j);
nodelist[l++] = (i*31 + j+1);
zoneno[nzones]=nzones;
zval[nzones] = i+j;
nzones++;
}
}
}
if (reorder)
{
float tmp = zval[nzones-1];
zval[nzones-1] = zval[nzones-2];
zval[nzones-2] = tmp;
}
shapecnt[0] = nzones;
if (friendly && (driver&0xF) == DB_HDF5)
DBSetFriendlyHDF5Names(1);
/* Write out the mesh */
printf("Creating test file: \"%s\".\n", filename);
db = DBCreate(filename, DB_CLOBBER, DB_LOCAL,
"UCD mesh test", driver);
DBPutUcdmesh(db,"mesh",3,
NULL, coords,
nnodes, nzones,
NULL, "fl",
DB_FLOAT, NULL);
DBPutFacelist(db,"fl",nzones,3,
nodelist,l,
0, zoneno,
shapesize,shapecnt, 1,
NULL,NULL,0);
if (reorder)
{
DBPutUcdvar1(db, "nval", "mesh", nval, nnodes, NULL,0,
DB_FLOAT, DB_NODECENT, NULL);
DBPutUcdvar1(db, "zval", "mesh", zval, nzones, NULL,0,
DB_FLOAT, DB_ZONECENT, NULL);
}
else
{
DBPutUcdvar1(db, "zval", "mesh", zval, nzones, NULL,0,
DB_FLOAT, DB_ZONECENT, NULL);
DBPutUcdvar1(db, "nval", "mesh", nval, nnodes, NULL,0,
DB_FLOAT, DB_NODECENT, NULL);
}
DBClose(db);
CleanupDriverStuff();
return(0);
}
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose:
*
* Return: 0
*
* Programmer:
*
* Modifications:
* Robb Matzke, 1999-04-09
* Added argument parsing to control the driver which is used.
*
*-------------------------------------------------------------------------
*/
int
main(int argc, char *argv[])
{
int i,j;
DBfile *file = NULL;
char *coordnames[2]; /* Name the axes */
float xcoords[NX + 1];
float ycoords[NY + 1];
float *coordinates[2];
int dims[2];
float float_var[NX*NY];
float dist_var[NX*NY];
float density_var[NX*NY];
float total_length, frac_length;
int matnos[2];
int nmatspec[2];
float species_mf[MAX_MIX_LEN];
int matlist[MAX_MIX_LEN];
int speclist[MAX_MIX_LEN];
int nspecies_mf;
float dist;
DBoptlist *optlist;
int value;
int driver=DB_PDB;
char *filename="species.silo";
int show_all_errors = FALSE;
/* Parse command-line */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB", 6)) {
driver = StringToDriver(argv[i]);
filename = "species.pdb";
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
filename = "species.h5";
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
if (show_all_errors) DBShowErrors(DB_ALL_AND_DRVR, 0);
printf("Creating a 2D rectilinear SILO file `%s'...\n", filename);
/* Create the SILO file */
if ((file = DBCreate(filename, DB_CLOBBER, DB_LOCAL, NULL,
driver)) == NULL)
{
fprintf(stderr, "Unable to create SILO file\n");
exit(1);
}
/* Name the coordinate axes 'X' and 'Y' */
coordnames[0] = (char *) _db_safe_strdup("X");
coordnames[1] = (char *) _db_safe_strdup("Y");
/* Set up the coordinate values */
/* X Coordinates */
for(i=0;i<NX+1;i++)
xcoords[i] = ((double)i)/NX;
/* Y Coordinates */
for(j=0;j<NY+1;j++)
ycoords[j] = ((double)j)/NY;
coordinates[0] = xcoords;
coordinates[1] = ycoords;
/* Enumerate the dimensions (4 values in x direction, 3 in y) */
dims[0] = NX + 1;
dims[1] = NY + 1;
/* Write out the mesh to the file */
DBPutQuadmesh(file, "quad_mesh", (DBCAS_t) coordnames,
coordinates, dims, 2, DB_FLOAT, DB_COLLINEAR, NULL);
/* Set up the material and species information */
/* Material numbers */
matnos[0] = 1;
matnos[1] = 2;
/* Material species numbers */
nmatspec[0] = 3;
nmatspec[1] = 1;
printf("Calculating material information.\n");
/* Mixed species array */
nspecies_mf = 0;
for(j=0;j<NY;j++)
{
for(i=0;i<NX;i++)
{
if (xcoords[i] >= 0.8)
{
matlist[j*NX+i] = 2;
/* All one species */
speclist[j*NX+i] = nspecies_mf + 1;
species_mf[nspecies_mf++] = 1.0;
}
else
{
matlist[j*NX+i] = 1;
speclist[j*NX+i] = nspecies_mf + 1;
if (xcoords[i+1] < (1.0/3.0))
{
/* All on left - All species 1 */
species_mf[nspecies_mf++] = 1.0;
species_mf[nspecies_mf++] = 0.0;
species_mf[nspecies_mf++] = 0.0;
} else if ((xcoords[i] > (1.0/3.0)) && (xcoords[i+1] < (2.0/3.0)))
{
/* All in middle - All species 2 */
species_mf[nspecies_mf++] = 0.0;
species_mf[nspecies_mf++] = 1.0;
species_mf[nspecies_mf++] = 0.0;
} else if (xcoords[i] > (2.0/3.0))
{
/* All on right - All species 3 */
species_mf[nspecies_mf++] = 0.0;
species_mf[nspecies_mf++] = 0.0;
species_mf[nspecies_mf++] = 1.0;
} else
{
/* Somewhere on a boundary */
if (xcoords[i] < (1.0/3.0))
{
/* Left boundary */
total_length = (xcoords[i+1] - xcoords[i]);
frac_length = ((1.0/3.0) - xcoords[i]);
species_mf[nspecies_mf++] = (frac_length/total_length);
species_mf[nspecies_mf++] = 1 - (frac_length/total_length);
species_mf[nspecies_mf++] = 0.0;
} else
{
/* Right boundary */
total_length = (xcoords[i+1] - xcoords[i]);
frac_length = ((2.0/3.0) - xcoords[i]);
species_mf[nspecies_mf++] = 0.0;
species_mf[nspecies_mf++] = (frac_length/total_length);
species_mf[nspecies_mf++] = 1 - (frac_length/total_length);
}
}
}
}
}
/* The dimensions have changed since materials are defined for zones,
* not for nodes */
dims[0] = NX;
dims[1] = NY;
if (nspecies_mf>MAX_MIX_LEN)
{
fprintf(stderr,"Length %d of mixed species arrays exceeds the max %d.\n",
nspecies_mf,MAX_MIX_LEN);
fprintf(stderr,"Memory may have been corrupted, and the SILO\n");
fprintf(stderr,"file may be invalid.\n");
}
/* Write out the material to the file */
DBPutMaterial(file, "mat1", "quad_mesh", 2, matnos, matlist, dims, 2, NULL,
NULL, NULL, NULL, 0, DB_FLOAT, NULL);
/* Write out the material species to the file */
DBPutMatspecies(file, "matspec1", "mat1", 2, nmatspec, speclist, dims,
2, nspecies_mf, species_mf, NULL, 0, DB_FLOAT, NULL);
free(coordnames[0]);
free(coordnames[1]);
printf("Calculating variables.\n");
/* Set up the variables */
for(j=0;j<NY;j++)
for(i=0;i<NX;i++)
{
dist = distance((xcoords[i]+xcoords[i+1])/2,(ycoords[j]+ycoords[j+1])/2,0.5,0.5);
float_var[j*NX+i] = cos(SCALE*dist)/exp(dist*DAMP);
dist_var[j*NX+i] = dist;
if (xcoords[i]<(1.0/3.0))
density_var[j*NX+i] = 30.0;
else if ((xcoords[i]<(2.0/3.0)) || (xcoords[i] >= 0.8))
density_var[j*NX+i] = 1000.0;
else
density_var[j*NX+i] = 200.0;
}
/* Make a DBoptlist so that we can tell the variables to use the
material species stuff */
optlist = DBMakeOptlist(1);
value = DB_ON;
DBAddOption(optlist, DBOPT_USESPECMF, &value);
/* Write the data variables to the file */
DBPutQuadvar1(file, "float_var", "quad_mesh", float_var, dims, 2, NULL,
0, DB_FLOAT, DB_ZONECENT, optlist);
DBPutQuadvar1(file, "dist_var", "quad_mesh", dist_var, dims, 2, NULL,
0, DB_FLOAT, DB_ZONECENT, optlist);
DBPutQuadvar1(file, "density_var", "quad_mesh", density_var, dims, 2, NULL,
0, DB_FLOAT, DB_ZONECENT, optlist);
DBFreeOptlist(optlist);
DBClose(file);
printf("Finished.\n");
CleanupDriverStuff();
return (0);
}
int
main(int argc, char *argv[])
{
DBfile *dbfile = NULL;
char *coordnames[3];
float *coords[3];
float x[64], y[64], z[64];
int shapesize[1];
int shapecnt[1];
DBfacelist *facelist = NULL;
int matnos[1], matlist[1], dims[3];
int i, j, k, len;
float evar2d[2*16], evar3d[3*64], fvar3d[3*64];
int driver = DB_PDB;
char *filename = "efcentering.silo";
int layer, zone;
int nodelist2[9*4] = {0,1,5,4, 1,2,6,5, 2,3,7,6,
4,5,9,8, 5,6,10,9, 6,7,11,10,
8,9,13,12, 9,10,14,13, 10,11,15,14};
int st2 = DB_ZONETYPE_QUAD;
int ss2 = 4;
int sc2 = 9;
int nodelist3[27*8];
int st3 = DB_ZONETYPE_HEX;
int ss3 = 8;
int sc3 = 27;
int nedges;
int *edges;
int nfaces;
int *faces;
int ndims;
int show_all_errors = FALSE;
/* Parse command-line */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB",6)) {
driver = StringToDriver(argv[i]);
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "%s: ignored argument `%s'\n", argv[0], argv[i]);
}
}
DBShowErrors(show_all_errors?DB_ALL_AND_DRVR:DB_ABORT, NULL);
dbfile = DBCreate(filename, DB_CLOBBER, DB_LOCAL, "edge and face centered data", driver);
coordnames[0] = "xcoords";
coordnames[1] = "ycoords";
coordnames[2] = "zcoords";
dims[0] = 4;
dims[1] = 4;
dims[2] = 4;
for (k = 0; k < 4; k++)
{
for (j = 0; j < 4; j++)
{
for (i = 0; i < 4; i++)
{
x[k*4*4+j*4+i] = (float) i;
y[k*4*4+j*4+i] = (float) j;
z[k*4*4+j*4+i] = (float) k;
evar2d[0*16+j*4+i] = (float) i;
evar2d[1*16+j*4+i] = (float) j;
evar3d[0*64+k*4*4+j*4+i] = (float) i;
evar3d[1*64+k*4*4+j*4+i] = (float) j;
evar3d[2*64+k*4*4+j*4+i] = (float) k;
fvar3d[0*64+k*4*4+j*4+i] = (float) 10*i;
fvar3d[1*64+k*4*4+j*4+i] = (float) 100*j;
fvar3d[2*64+k*4*4+j*4+i] = (float) 1000*k;
}
}
}
coords[0] = x;
coords[1] = y;
coords[2] = z;
/* build 3d zonelist by layering 2d zonelist */
for (layer = 0; layer < 3; layer++)
{
for (zone = 0; zone < 9; zone++)
{
nodelist3[layer*9*8+zone*8+0] = nodelist2[zone*4+0]+(layer+1)*16;
nodelist3[layer*9*8+zone*8+1] = nodelist2[zone*4+0]+layer*16;
nodelist3[layer*9*8+zone*8+2] = nodelist2[zone*4+1]+layer*16;
nodelist3[layer*9*8+zone*8+3] = nodelist2[zone*4+1]+(layer+1)*16;
nodelist3[layer*9*8+zone*8+4] = nodelist2[zone*4+3]+(layer+1)*16;
nodelist3[layer*9*8+zone*8+5] = nodelist2[zone*4+3]+layer*16;
nodelist3[layer*9*8+zone*8+6] = nodelist2[zone*4+2]+layer*16;
nodelist3[layer*9*8+zone*8+7] = nodelist2[zone*4+2]+(layer+1)*16;
}
}
DBPutQuadmesh(dbfile, "qmesh2", (DBCAS_t) coordnames, coords, dims, 2, DB_FLOAT, DB_NONCOLLINEAR, 0);
DBPutQuadmesh(dbfile, "qmesh3", (DBCAS_t) coordnames, coords, dims, 3, DB_FLOAT, DB_NONCOLLINEAR, 0);
DBPutQuadvar1(dbfile, "qevar2", "qmesh2", evar2d, dims, 2, 0, 0, DB_FLOAT, DB_EDGECENT, 0);
DBPutQuadvar1(dbfile, "qevar3", "qmesh3", evar3d, dims, 3, 0, 0, DB_FLOAT, DB_EDGECENT, 0);
DBPutQuadvar1(dbfile, "qfvar3", "qmesh3", fvar3d, dims, 3, 0, 0, DB_FLOAT, DB_FACECENT, 0);
DBPutUcdmesh(dbfile, "umesh2", 2, (DBCAS_t) coordnames, coords, 16, 9, "um2zl", 0, DB_FLOAT, 0);
DBPutUcdmesh(dbfile, "umesh3", 3, (DBCAS_t) coordnames, coords, 64, 27, "um3zl", 0, DB_FLOAT, 0);
DBPutZonelist2(dbfile, "um2zl", 9, 2, nodelist2, ss2*sc2, 0, 0, 0, &st2, &ss2, &sc2, 1, 0);
DBPutZonelist2(dbfile, "um3zl", 27, 3, nodelist3, ss3*sc3, 0, 0, 0, &st3, &ss3, &sc3, 1, 0);
/* Only reason we build an edgelist is so we know the number of unique edges in the mesh */
build_edgelist(27, 3, nodelist3, ss3*sc3, 0, 0, 0, &st3, &ss3, &sc3, 1, &nedges, &edges);
for (i = 0; i < nedges; i++)
evar3d[i] = i;
DBPutUcdvar1(dbfile, "uevar3", "umesh3", evar3d, nedges, 0, 0, DB_FLOAT, DB_EDGECENT, 0);
ndims = 2;
dims[0] = nedges;
dims[1] = 2;
DBWrite(dbfile, "edges", edges, dims, ndims, DB_INT);
free(edges);
/* Only reason we build a facelist is so we know the number of unique faces in the mesh */
build_facelist(27, 3, nodelist3, ss3*sc3, 0, 0, 0, &st3, &ss3, &sc3, 1, &nfaces, &faces);
for (i = 0; i < nfaces; i++)
fvar3d[i] = i;
DBPutUcdvar1(dbfile, "ufvar3", "umesh3", fvar3d, nfaces, 0, 0, DB_FLOAT, DB_FACECENT, 0);
dims[0] = nfaces;
dims[1] = 4;
DBWrite(dbfile, "faces", faces, dims, ndims, DB_INT);
free(faces);
DBClose(dbfile);
CleanupDriverStuff();
return (0);
}
int
main(int argc, char *argv[])
{
int nnodes = NNODES;
int nzones = NZONES;
int nodelist[23];
int shapesize[] = {8, 4, 5, 6};
int shapecnt[] = {1, 1, 1, 1};
char mesh_command[256];
int len;
char *filename = "alltypes.silo";
int driver = DB_PDB;
DBfile *dbfile = NULL;
int ndims = NDIMS;
int dims[NDIMS];
double *coords[NDIMS];
double x[NNODES];
double y[NNODES];
double z[NNODES];
DBfacelist *facelist = NULL;
double nodal[NNODES];
double zonal[NZONES];
int matlist[NZONES];
int mats[] = {1,2,3,4};
int i,j;
const int origin = 0;
int show_all_errors = FALSE;
/* Parse command-line options */
for (i=1; i<argc; i++) {
if (!strncmp(argv[i], "DB_PDB",6)) {
driver = StringToDriver(argv[i]);
filename = "alltypes.pdb";
} else if (!strncmp(argv[i], "DB_HDF5", 7)) {
driver = StringToDriver(argv[i]);
filename = "alltypes.h5";
} else if (!strcmp(argv[i], "show-all-errors")) {
show_all_errors = 1;
} else if (argv[i][0] != '\0') {
fprintf(stderr, "unknown option: %s\n", argv[i]);
exit(1);
}
}
/* Turn on error handling */
DBShowErrors(show_all_errors?DB_ALL_AND_DRVR:DB_ABORT, NULL);
DBSetFriendlyHDF5Names(2);
/* Create file */
printf("Creating test file \"%s\".\n", filename);
dbfile = DBCreate(filename, DB_CLOBBER, DB_LOCAL, "3D ucd", driver);
i = 0;
/* 0 */
x[i] = 0.5;
y[i] = 1.0;
z[i++] = 0.0;
/* 1 */
x[i] = 1.5;
y[i] = 1.0;
z[i++] = 0.0;
/* 2 */
x[i] = 1.5;
y[i] = 1.0;
z[i++] = 1.0;
/* 3 */
x[i] = 0.5;
y[i] = 1.0;
z[i++] = 1.0;
/* 4 */
x[i] = 0.5;
y[i] = 2.0;
z[i++] = 0.0;
/* 5 */
x[i] = 1.5;
y[i] = 2.0;
z[i++] = 0.0;
/* 6 */
x[i] = 2.5;
y[i] = 2.0;
z[i++] = 0.0;
/* 7 */
x[i] = 2.5;
y[i] = 2.0;
z[i++] = 1.0;
/* 8 */
x[i] = 1.5;
y[i] = 2.0;
z[i++] = 1.0;
/* 9 */
x[i] = 0.5;
y[i] = 2.0;
z[i++] = 1.0;
/* 10 */
x[i] = 0.0;
y[i] = 3.0;
z[i++] = 0.5;
/* 11 */
x[i] = 1.0;
y[i] = 3.0;
z[i++] = 0.5;
/* 12 */
x[i] = 2.0;
y[i] = 3.0;
z[i++] = 0.5;
coords[0] = x;
coords[1] = y;
coords[2] = z;
DBPutUcdmesh(dbfile, "mesh", 3, NULL, (void *)coords, nnodes, nzones, "zonelist",
"facelist", DB_DOUBLE, NULL);
i = 0;
/* Hex */
nodelist[i++] = 4;
nodelist[i++] = 5;
nodelist[i++] = 8;
nodelist[i++] = 9;
nodelist[i++] = 0;
nodelist[i++] = 1;
nodelist[i++] = 2;
nodelist[i++] = 3;
/* Tet */
nodelist[i++] = 10;
nodelist[i++] = 4;
nodelist[i++] = 11;
nodelist[i++] = 9;
/* Pyramid */
nodelist[i++] = 4;
nodelist[i++] = 5;
nodelist[i++] = 8;
nodelist[i++] = 9;
nodelist[i++] = 11;
/* Prism */
nodelist[i++] = 5;
nodelist[i++] = 6;
nodelist[i++] = 7;
nodelist[i++] = 8;
nodelist[i++] = 11;
nodelist[i++] = 12;
for (j=0; j<i; j++)
nodelist[j] += origin;
DBSetDeprecateWarnings(0);
DBPutZonelist(dbfile, "zonelist", nzones, ndims, nodelist, 23, origin,
shapesize, shapecnt, 4);
DBSetDeprecateWarnings(3);
facelist = DBCalcExternalFacelist(nodelist, nnodes, origin,
shapesize, shapecnt, 4, NULL, 0);
DBPutFacelist(dbfile, "facelist", facelist->nfaces, facelist->ndims,
facelist->nodelist, facelist->lnodelist, facelist->origin,
facelist->zoneno, facelist->shapesize, facelist->shapecnt,
facelist->nshapes, facelist->types, facelist->typelist,
facelist->ntypes);
for(i=0;i<nnodes;i++)
nodal[i] = x[i];
zonal[0] = 4.0;
zonal[1] = 2.0;
zonal[2] = 0.0;
zonal[3] = 7.0;
DBPutUcdvar1(dbfile, "nodal", "mesh", (void*)nodal, nnodes, NULL, 0,
DB_DOUBLE, DB_NODECENT, NULL);
DBPutUcdvar1(dbfile, "zonal", "mesh", (void*)zonal, nzones, NULL, 0,
DB_DOUBLE, DB_ZONECENT, NULL);
matlist[0] = 1;
matlist[1] = 2;
matlist[2] = 3;
matlist[3] = 4;
dims[0] = nzones;
DBPutMaterial(dbfile, "mat", "mesh", 4, mats, matlist, dims, 1, NULL, NULL,
NULL, NULL, 0, DB_DOUBLE, NULL);
sprintf(mesh_command, "mesh mesh");
len = strlen(mesh_command) + 1;
DBWrite(dbfile, "_meshtvinfo", mesh_command, &len, 1, DB_CHAR);
DBClose(dbfile);
DBFreeFacelist(facelist);
CleanupDriverStuff();
return 0;
}
