//---------------------------------------------------------------------------
TestModel::TestModel(PluginManager* manager)
:
CPPPlugin( "TestModel", "Examples", NULL, manager), //Construct Base
//Properties
mModel( "", "Model", "A SBML model"),
mTestData( TelluriumData(), "TestData", "Simulated Data"),
mTestDataWithNoise( TelluriumData(), "TestDataWithNoise", "Simulated Data With Noise"),
mSigma( 3.e-6, "Sigma", "Sigma (<=> size of applied noise)")
{
mVersion = "1.0.0";
//Setup the plugins properties
mProperties.add(&mModel);
mProperties.add(&mTestData);
mProperties.add(&mTestDataWithNoise);
mHint ="Get access to a SBML model, and simulated data using the model.";
mDescription="The TestModel plugin exposes properties representing a simple SBML model and simulated data using the model. The purpose of this plugin is to give a client easy access to a test model \
as well as data to test with. \
The TestModel plugin was developed at the University of Washington by Totte Karlsson, 2012-2014.";
//Load the model from file here..
try
{
mModel.setValue(theModel);
}
catch(const exception& ex)
{
Log(lError)<<"There was a problem in the TestModel plugin: "<<ex.what();
}
}
AddNoise::AddNoise(rr::RoadRunner* aRR, PluginEvent fn1, PluginEvent fn2, PluginEvent fn3)
:
CPPPlugin( "AddNoise", "Signal Processing", aRR, NULL), //Construct Base
mNoiseType( ntGaussian, "NoiseType", "Type of noise (Gaussian = 0)."),
mSigma( 1, "Sigma", "Size of applied noise"),
mData( TelluriumData(), "InputData", "Data on which noise will be applied to"),
mProgress( 0, "Progress", "Indicate progress in (0-100%)"),
mAddNoiseWorker(*this)
{
mVersion = "1.0.1";
//Setup the plugins capabilities
mProperties.add(&mNoiseType);
mProperties.add(&mSigma);
mProperties.add(&mData);
mProperties.add(&mProgress);
mHint ="Add Gaussian Noise to RoadRunner Data";
mDescription="The AddNoise plugin adds Gaussian noise to synthetic data. The amount of noise is controlled \
by the plugins Sigma property. Specifically, noise is generated for each single data value, with a probability corresponding to a Gaussian distribution centered around the value, and with a variance equal to (sigma^2). \
The Plugin accepts Tellurium data as input, in the \"InputData\" property. \
Currently only Gaussian noise is supported. \
The progress of the application of noise can be read in the Progress property. \
Noise will not be generated onto the first column of data, if its column label is equal to \"Time\", (not case sensitive). \
The AddNoise plugin was developed at the University of Washington by Totte Karlsson, 2012-2014.";
//The function below assigns property descriptions
assignPropertyDescriptions();
}
