MassAnalyzerVisualizer::MassAnalyzerVisualizer(bool editable, QWidget * parent) :
BaseVisualizerGUI(editable, parent),
BaseVisualizer<MassAnalyzer>()
{
addLabel_("Modify massanalyzer information.");
addSeparator_();
addIntLineEdit_(order_, "Order");
addComboBox_(type_, "Type");
addComboBox_(res_method_, "Resolution method");
addComboBox_(res_type_, "Resolution type");
addComboBox_(scan_dir_, "Scan direction");
addComboBox_(scan_law_, "Scan law");
addComboBox_(reflectron_state_, "Reflectron state");
addDoubleLineEdit_(res_, "Resolution");
addDoubleLineEdit_(acc_, "Accuracy");
addDoubleLineEdit_(scan_rate_, "Scan rate (in s)");
addDoubleLineEdit_(scan_time_, "Scan time (in s)");
addDoubleLineEdit_(TOF_, "TOF Total path length (in meter)");
addDoubleLineEdit_(iso_, "Isolation width (in m/z)");
addDoubleLineEdit_(final_MS_, "Final MS exponent");
addDoubleLineEdit_(magnetic_fs_, "Magnetic field strength (in T)");
finishAdding_();
}
ProductVisualizer::ProductVisualizer(bool editable, QWidget * parent) :
BaseVisualizerGUI(editable, parent),
BaseVisualizer<Product>()
{
addLabel_("Modify processing method information.");
addSeparator_();
addDoubleLineEdit_(product_mz_, "m/z");
addDoubleLineEdit_(product_window_low_, "Lower offset from target m/z");
addDoubleLineEdit_(product_window_up_, "Upper offset from target m/z");
finishAdding_();
}
SampleVisualizer::SampleVisualizer(bool editable, QWidget * parent) :
BaseVisualizerGUI(editable, parent),
BaseVisualizer<Sample>()
{
addLabel_("Modify Sample information");
addSeparator_();
addLineEdit_(samplename_, "Name");
addLineEdit_(samplenumber_, "Number");
addLineEdit_(sampleorganism_, "Organism");
addTextEdit_(samplecomment_, "Comment");
addComboBox_(samplestate_, "State");
addDoubleLineEdit_(samplemass_, "Mass (in gram)");
addDoubleLineEdit_(samplevolume_, "Volume (in ml)");
addDoubleLineEdit_(sampleconcentration_, "Concentration (in g/l)");
finishAdding_();
}
TaggingVisualizer::TaggingVisualizer(bool editable, QWidget * parent) :
BaseVisualizerGUI(editable, parent),
BaseVisualizer<Tagging>()
{
addLabel_("Modify Tagging information");
addSeparator_();
addLineEdit_(treatmenttype_, "Treatment type");
addTextEdit_(treatmentcomment_, "Comment");
addLineEdit_(modificationname_, "Reagent name");
addDoubleLineEdit_(modificationmass_, "Mass");
addComboBox_(modificationspecificity_, "Specificity Type");
addLineEdit_(modificationAA_, "Affected Amino Acids");
addDoubleLineEdit_(taggingmass_shift_, "Mass_Shift");
addComboBox_(taggingvariant_, "Variant");
finishAdding_();
}
PrecursorVisualizer::PrecursorVisualizer(bool editable, QWidget * parent) :
BaseVisualizerGUI(editable, parent),
BaseVisualizer<Precursor>()
{
addLabel_("Modify processing method information.");
addSeparator_();
addDoubleLineEdit_(mz_, "m/z");
addDoubleLineEdit_(int_, "intensity");
addIntLineEdit_(charge_, "charge");
addDoubleLineEdit_(window_low_, "Lower offset from target m/z");
addDoubleLineEdit_(window_up_, "Upper offset from target m/z");
addListView_(activation_methods_, "Activation methods");
addDoubleLineEdit_(activation_energy_, "Activation energy");
finishAdding_();
}
PeptideIdentificationVisualizer::PeptideIdentificationVisualizer(bool editable, QWidget * parent, MetaDataBrowser * caller) :
BaseVisualizerGUI(editable, parent),
BaseVisualizer<PeptideIdentification>()
{
pidv_caller_ = caller;
addLineEdit_(identifier_, "Identifier<br>(of corresponding ProteinIdentification)");
addSeparator_();
addLineEdit_(score_type_, "Score type");
addBooleanComboBox_(higher_better_, "Higher score is better");
addDoubleLineEdit_(identification_threshold_, "Peptide significance threshold");
addSeparator_();
addLabel_("Show peptide hits with score equal or better than a threshold.");
QPushButton * button;
addLineEditButton_("Score threshold", filter_threshold_, button, "Filter");
connect(button, SIGNAL(clicked()), this, SLOT(updateTree_()));
finishAdding_();
}
