C++ (Cpp) alignment_add_operation Examples

Example #1

File: test.c Project: AlexWoroschilow/uni_hamburg

int main() {

    int evalcost;

    char *align = "R7I2R2D1R3I1R3";

    char *seq1 = "acgtagatatatagat";
    char *seq2 = "agaaagaggtaagaggga";
       
    alignment alg = alignment_new(seq1, seq2, align);

    alignment_show(alg);

    evalcost = alignment_evalcost(alg);

    printf("\tCosts: %d\n\n", evalcost);

    printf("\tadding one deletion...\n");
    alignment_add_operation(&alg, 1, 'D');
    alignment_show(alg);

    printf("\tadding one insertion...\n");
    alignment_add_operation(&alg, 1, 'I');
    alignment_show(alg);

    printf("\tadding one replacement...\n");
    alignment_add_operation(&alg, 1, 'R');
    alignment_show(alg);

    return(EXIT_SUCCESS);
}

Example #2

File: alignment.c Project: dr-walfeld/GSA

int alignment_add_operations (alignment *a, char operation, int length)
{
  int i;
  int s = 0;
  for (i = 0; i < length && s == 0; i++)
  {
    s += alignment_add_operation (a, operation);
  }

  return s;
}

Example #3

File: alignment.c Project: dr-walfeld/GSA

int alignment_add_replacement (alignment* a)
{
  return alignment_add_operation (a, 'R');
}

Example #4

File: alignment.c Project: dr-walfeld/GSA

int alignment_add_insertion (alignment* a)
{
  return alignment_add_operation (a, 'I');
}

Example #5

File: alignment.c Project: dr-walfeld/GSA

int alignment_add_deletion (alignment* a)
{
  return alignment_add_operation (a, 'D');
}