C++ (Cpp) bsq Examples

Example #1

File: main.c Project: BenElhadj/Qodvwr-42

void	ft_check(char *str)
{
	if (str == NULL || *str == '\0')
		ft_puterr("map error\n");
	if (bsq(str) == 0)
		ft_puterr("map error\n");
}

Example #2

File: main.c Project: jgan42/bsq

int	main(int ac, char **av)
{
	int		i;
	int		j;
	char	*tab;
	t_sq	sq;
	char	**map;

	(void)ac;
	j = 1;
	while (av[j])
	{
		i = 0;
		tab = read_file(av[j]);
		write(1, "lo1", 3);
		map = map_error(tab);
		write(1, "lo2", 3);
		sq = bsq(map);
		write(1, "lo3", 3);
		print_map(map, &sq);
		write(1, "lo4", 3);
		++j;
	}
	return(0);
}

Example #3

File: main.c Project: Kamaole/bsq_reader

int		main(int ac, char **av)
{
	int		i;
	t_bsq	*input;

	i = 1;
	if (ac > 1)
	{
		while (i < ac)
		{
			input = get_file_input(av[i]);
			bsq(input);
			i++;
		}
	}
	else
	{
		input = get_std_input();
		bsq(input);
	}
	return (0);
}

Example #4

File: test_objmgr.cpp Project: DmitrySigaev/ncbi

CRef<ncbi::blast::CBlastSearchQuery>
CTestObjMgr::CreateBlastSearchQuery(CSeq_id& id, ENa_strand strand)
{
    CRef<CSeq_loc> seqloc(new CSeq_loc());
    CRef<CScope> scope(new CScope(GetObjMgr()));
    scope->AddDefaults();
    
    seqloc->SetInt().SetFrom(0);
    seqloc->SetInt().SetTo(sequence::GetLength(id, scope)-1);
    seqloc->SetInt().SetStrand(strand);
    seqloc->SetInt().SetId().Assign(id);
    
    TMaskedQueryRegions mqr;
    
    CRef<CBlastSearchQuery>
        bsq(new CBlastSearchQuery(*seqloc, *scope, mqr));
    
    return bsq;
}

Example #5

File: bsq.c Project: elominp/BSQ

int	main(int argc, char **argv)
{
  int	i;
  t_map	*map;
  t_ram	ramdata;

  i = 0;
  if (argc < 2)
    return (0);
  get_raminfo(&ramdata);
  while (++i < argc)
    {
      if ((map = get_bsqmap(argv[i], &ramdata)) != NULL)
	bsq(map);
      else
	disp_example();
    }
  return (0);
 }

Example #6

File: main.c Project: miniponps/42-Piscine-C

int		main(int argc, char **argv)
{
	bsq(&argc, argv);
	return (0);
}