int main(int argc, char *argv[])
{
if(argc == 1 && !cgiIsOnWeb())
usage();
cgiSpoof(&argc, argv);
checkArguments();
hSetDb(origGenome);
if(hgTest)
runSamples("hgCoordConv.test.good", "hgCoordConv.test.bad", origGenome, origGenome, numTests);
else
{
/* do our thing */
if(calledSelf)
{
cartEmptyShell(doConvertCoordinates, hUserCookie(), excludeVars, NULL);
}
else
{
/* Check to see if in zoo browser... if so call doFormZoo */
if (!containsStringNoCase(origDb, "zoo"))
cartEmptyShell(doForm, hUserCookie(), excludeVars, NULL);
else
cartEmptyShell(doFormZoo, hUserCookie(), excludeVars, NULL);
}
}
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
if (!cgiIsOnWeb())
usage();
cgiSpoof(&argc, argv);
pushWarnHandler(badRequestWarn);
edwScriptSubmitStatus();
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
boolean isFromWeb = cgiIsOnWeb();
if (!isFromWeb && !cgiSpoof(&argc, argv))
usage();
oldVars = hashNew(0);
cartEmptyShellNoContent(localWebWrap, hUserCookie(), excludeVars, oldVars);
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
if (!cgiIsOnWeb())
{
warn("This is a CGI script - attempting to fake environment from command line");
cgiSpoof(&argc, argv);
}
htmShell("CGI Example", doMiddle, NULL);
return 0;
}
int main(int argc, char *argv[], char **env)
/* Process command line. */
{
if (!cgiIsOnWeb())
usage();
mainEnv = env;
userEmail = edwGetEmailAndVerify();
edwWebHeaderWithPersona("ENCODE Data Warehouse Register Script");
htmEmptyShell(doMiddle, NULL);
edwWebFooterWithPersona();
return 0;
}
int main(int argc, char *argv[])
/* Process command line. */
{
boolean isFromWeb = cgiIsOnWeb();
if (!isFromWeb && !cgiSpoof(&argc, argv))
usage();
/* Put out HTTP header and HTML HEADER all the way through <BODY> */
edwWebHeaderWithPersona("Submit data to ENCODE Data Warehouse");
/* Call error handling wrapper that catches us so we write /BODY and /HTML to close up page
* even through an errAbort. */
htmEmptyShell(doMiddle, NULL);
edwWebFooterWithPersona();
return 0;
}
int main(int argc, char *argv[])
{
if (!cgiIsOnWeb())
{
if (argc == 2)
{
static char buf[128];
sprintf(buf, "QUERY_STRING=NT=%s", argv[1]);
putenv(buf);
}
else
{
putenv("QUERY_STRING=commandLine=on");
}
}
htmShell("Check Layout", doMiddle, "get");
return 0;
}
static void doMainPage()
/* Send HTML with javascript to bootstrap the user interface. */
{
// Start web page with new banner
char *db = NULL, *genome = NULL, *clade = NULL;
getDbGenomeClade(cart, &db, &genome, &clade, oldVars);
// If CGI has &lastDbPos=..., handle that here and save position to cart so it's in place for
// future cartJson calls.
char *position = cartGetPosition(cart, db, NULL);
cartSetString(cart, "position", position);
webStartJWest(cart, db, "Genome Browser Gateway");
if (cgiIsOnWeb())
checkForGeoMirrorRedirect(cart);
#define WARNING_BOX_START "<div id=\"previewWarningRow\" class=\"jwRow\">" \
"<div id=\"previewWarningBox\" class=\"jwWarningBox\">"
#define UNDER_DEV "Data and tools on this site are under development, have not been reviewed " \
"for quality, and are subject to change at any time. "
#define MAIN_SITE "The high-quality, reviewed public site of the UCSC Genome Browser is " \
"available for use at <a href=\"http://genome.ucsc.edu/\">http://genome.ucsc.edu/</a>."
#define WARNING_BOX_END "</div></div>"
if (hIsPreviewHost())
{
puts(WARNING_BOX_START
"WARNING: This is the UCSC Genome Browser preview site. "
"This website is a weekly mirror of our internal development server for public access. "
UNDER_DEV
"We provide this site for early access, with the warning that it is less available "
"and stable than our public site. "
MAIN_SITE
WARNING_BOX_END);
}
if (hIsPrivateHost() && !hHostHasPrefix("hgwdev-demo6"))
{
puts(WARNING_BOX_START
"WARNING: This is the UCSC Genome Browser development site. "
"This website is used for testing purposes only and is not intended for general public "
"use. "
UNDER_DEV
MAIN_SITE
WARNING_BOX_END);
}
// The visible page elements are all in ./hgGateway.html, which is transformed into a quoted .h
// file containing a string constant that we #include and print here (see makefile).
puts(
#include "hgGateway.html.h"
);
// Set global JS variables hgsid, activeGenomes, and survey* at page load time
// We can't just use "var hgsid = " or the other scripts won't see it -- it has to be
// "window.hgsid = ".
puts("<script>");
printf("window.%s = '%s';\n", cartSessionVarName(), cartSessionId(cart));
puts("window.activeGenomes =");
printActiveGenomes();
puts(";");
char *surveyLink = cfgOption("survey");
if (isNotEmpty(surveyLink) && !sameWord(surveyLink, "off"))
{
printf("window.surveyLink=\"%s\";\n", jsonStringEscape(surveyLink));
char *surveyLabel = cfgOptionDefault("surveyLabel", "Please take our survey");
printf("window.surveyLabel=\"%s\";\n", jsonStringEscape(surveyLabel));
char *surveyLabelImage = cfgOption("surveyLabelImage");
if (isNotEmpty(surveyLabelImage))
printf("window.surveyLabelImage=\"%s\";\n", jsonStringEscape(surveyLabelImage));
else
puts("window.surveyLabelImage=null;");
}
else
{
puts("window.surveyLink=null;");
puts("window.surveyLabel=null;");
puts("window.surveyLabelImage=null;");
}
puts("</script>");
puts("<script src=\"../js/es5-shim.4.0.3.min.js\"></script>");
puts("<script src=\"../js/es5-sham.4.0.3.min.js\"></script>");
puts("<script src=\"../js/lodash.3.10.0.compat.min.js\"></script>");
puts("<script src=\"../js/cart.js\"></script>");
webIncludeResourceFile("jquery-ui.css");
jsIncludeFile("jquery-ui.js", NULL);
jsIncludeFile("jquery.watermarkinput.js", NULL);
jsIncludeFile("utils.js",NULL);
// Phylogenetic tree .js file, produced by dbDbTaxonomy.pl:
char *dbDbTree = cfgOptionDefault("hgGateway.dbDbTaxonomy", "../js/dbDbTaxonomy.js");
if (isNotEmpty(dbDbTree))
printf("<script src=\"%s\"></script>\n", dbDbTree);
// Main JS for hgGateway:
puts("<script src=\"../js/hgGateway.js\"></script>");
webIncludeFile("inc/jWestFooter.html");
cartFlushHubWarnings();
webEndJWest();
}
