Example #1
0
File: h5jam.c Project: ElaraFX/hdf5
/*
 *  Write zeroes to fill the file from 'where' to 512, 1024, etc. bytes.
 *
 *  Returns the size of the padded file.
 */
hsize_t
write_pad(int ofile, hsize_t where)
{
    unsigned int i;
    char buf[1];
    hsize_t psize;

    buf[0] = '\0';

    HDlseek(ofile, (off_t) where, SEEK_SET);

    psize = compute_user_block_size (where);
    psize -= where;

    for(i = 0; i < psize; i++)
        HDwrite (ofile, buf, 1);

    return(where + psize);  /* the new size of the file. */
}
Example #2
0
File: h5jam.c Project: ElaraFX/hdf5
/*-------------------------------------------------------------------------
 * Function:    main
 *
 * Purpose:     HDF5 user block jammer
 *
 * Return:      Success:    0
 *              Failure:    1
 *
 * Programmer:
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
int
main (int argc, const char *argv[])
{
    int         ufid = -1;
    int         h5fid = -1;
    int         ofid = -1;
    void       *edata;
    H5E_auto2_t func;
    hid_t       ifile = -1;
    hid_t       plist = -1;
    herr_t      status;
    htri_t      testval;
    hsize_t     usize;
    hsize_t     h5fsize;
    hsize_t     startub;
    hsize_t     where;
    hsize_t     newubsize;
    off_t       fsize;
    h5_stat_t   sbuf;
    h5_stat_t   sbuf2;
    int         res;

    h5tools_setprogname(PROGRAMNAME);
    h5tools_setstatus(EXIT_SUCCESS);

    /* Disable error reporting */
    H5Eget_auto2(H5E_DEFAULT, &func, &edata);
    H5Eset_auto2(H5E_DEFAULT, NULL, NULL);

    /* Initialize h5tools lib */
    h5tools_init();

    parse_command_line (argc, argv);

    if (ub_file == NULL) {
        /* no user block */
        error_msg("missing arguemnt for -u <user_file>.\n");
        help_ref_msg(stderr);
        leave (EXIT_FAILURE);
    }

    testval = H5Fis_hdf5 (ub_file);

    if (testval > 0) {
        error_msg("-u <user_file> cannot be HDF5 file, but it appears to be an HDF5 file.\n");
        help_ref_msg(stderr);
        leave (EXIT_FAILURE);
    }

    if (input_file == NULL) {
        error_msg("missing arguemnt for -i <HDF5 file>.\n");
        help_ref_msg(stderr);
        leave (EXIT_FAILURE);
    }

    testval = H5Fis_hdf5 (input_file);

    if (testval <= 0) {
        error_msg("Input HDF5 file \"%s\" is not HDF5 format.\n", input_file);
        help_ref_msg(stderr);
        leave (EXIT_FAILURE);
    }

    ifile = H5Fopen (input_file, H5F_ACC_RDONLY, H5P_DEFAULT);

    if (ifile < 0) {
        error_msg("Can't open input HDF5 file \"%s\"\n", input_file);
        leave (EXIT_FAILURE);
    }

    plist = H5Fget_create_plist (ifile);
    if (plist < 0) {
        error_msg("Can't get file creation plist for file \"%s\"\n", input_file);
        H5Fclose(ifile);
        leave (EXIT_FAILURE);
    }

    status = H5Pget_userblock (plist, &usize);
    if (status < 0) {
        error_msg("Can't get user block for file \"%s\"\n", input_file);
        H5Pclose(plist);
        H5Fclose(ifile);
        leave (EXIT_FAILURE);
    }

    H5Pclose(plist);
    H5Fclose(ifile);

    ufid = HDopen(ub_file, O_RDONLY, 0);
    if(ufid < 0) {
        error_msg("unable to open user block file \"%s\"\n", ub_file);
        leave (EXIT_FAILURE);
    }

    res = HDfstat(ufid, &sbuf);
    if(res < 0) {
        error_msg("Can't stat file \"%s\"\n", ub_file);
        HDclose (ufid);
        leave (EXIT_FAILURE);
    }

    fsize = (off_t)sbuf.st_size;

    h5fid = HDopen(input_file, O_RDONLY, 0);
    if(h5fid < 0) {
        error_msg("unable to open HDF5 file for read \"%s\"\n", input_file);
        HDclose (ufid);
        leave (EXIT_FAILURE);
    }

    res = HDfstat(h5fid, &sbuf2);
    if(res < 0) {
        error_msg("Can't stat file \"%s\"\n", input_file);
        HDclose (h5fid);
        HDclose (ufid);
        leave (EXIT_FAILURE);
    }

    h5fsize = (hsize_t)sbuf2.st_size;

    if (output_file == NULL) {
        ofid = HDopen (input_file, O_WRONLY, 0);

        if (ofid < 0) {
            error_msg("unable to open output file \"%s\"\n", output_file);
            HDclose (h5fid);
            HDclose (ufid);
            leave (EXIT_FAILURE);
        }
    }
    else {
        ofid = HDopen (output_file, O_WRONLY | O_CREAT | O_TRUNC, 0644);

        if (ofid < 0) {
            error_msg("unable to create output file \"%s\"\n", output_file);
            HDclose (h5fid);
            HDclose (ufid);
            leave (EXIT_FAILURE);
        }
    }

    newubsize = compute_user_block_size ((hsize_t) fsize);

    startub = usize;

    if (usize > 0) {
        if (do_clobber == TRUE) {
            /* where is max of the current size or the new UB */
            if (usize > newubsize) {
                newubsize = usize;
            }
            startub = 0;    /*blast the old */
        }
        else {
            /* add new ub to current ublock, pad to new offset */
            newubsize += usize;
            newubsize = compute_user_block_size ((hsize_t) newubsize);
        }
    }

    /* copy the HDF5 from starting at usize to starting at newubsize:
     *  makes room at 'from' for new ub */
    /* if no current ub, usize is 0 */
    copy_some_to_file (h5fid, ofid, usize, newubsize, (ssize_t) (h5fsize - usize));

    /* copy the old ub to the beginning of the new file */
    if (!do_clobber) {
        where = copy_some_to_file (h5fid, ofid, (hsize_t) 0, (hsize_t) 0, (ssize_t) usize);
    }

    /* copy the new ub to the end of the ub */
    where = copy_some_to_file (ufid, ofid, (hsize_t) 0, startub, (ssize_t) - 1);

    /* pad the ub */
    where = write_pad (ofid, where);

    if(ub_file)
        HDfree (ub_file);
    if(input_file)
        HDfree (input_file);
    if(output_file)
        HDfree (output_file);
    
    if(ufid >= 0)
        HDclose (ufid);
    if(h5fid >= 0)
        HDclose (h5fid);
    if(ofid >= 0)
        HDclose (ofid);

    return h5tools_getstatus();
}
Example #3
0
/*-------------------------------------------------------------------------
 * Function:    main
 *
 * Purpose:     HDF5 user block jammer
 *
 * Return:      Success:    0
 *              Failure:    1
 *
 * Programmer:
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
int
main (int argc, const char *argv[])
{
  int ufid;
  int h5fid;
  int ofid;
  void *edata;
  H5E_auto_t func; 
  hid_t ifile;
  hid_t plist;
  herr_t status;
  htri_t testval;
  hsize_t usize;
  hsize_t h5fsize;
  hsize_t startub;
  hsize_t where;
  hsize_t newubsize;
  off_t fsize;
  struct stat sbuf;
  struct stat sbuf2;
  int res;

  /* Disable error reporting */
  H5Eget_auto (&func, &edata);
  H5Eset_auto (NULL, NULL);

  parse_command_line (argc, argv);

  if (ub_file == NULL)
    {
      /* no user block */
      error_msg (progname, "no user block file name\n");
      usage (progname);
      exit (EXIT_FAILURE);
    }

  if (input_file == NULL)
    {
      /* no user block */
      error_msg (progname, "no HDF5 file\n");
      usage (progname);
      exit (EXIT_FAILURE);
    }

  testval = H5Fis_hdf5 (input_file);

  if (testval <= 0)
    {
      error_msg (progname, "Input HDF5 file is not HDF \"%s\"\n", input_file);
      exit (EXIT_FAILURE);
    }

  ifile = H5Fopen (input_file, H5F_ACC_RDONLY, H5P_DEFAULT);

  if (ifile < 0)
    {
      error_msg (progname, "Can't open input HDF5 file \"%s\"\n", input_file);
      exit (EXIT_FAILURE);
    }

  plist = H5Fget_create_plist (ifile);
  if (plist < 0)
    {
      error_msg (progname, "Can't get file creation plist for file \"%s\"\n",
		 input_file);
      exit (EXIT_FAILURE);
    }

  status = H5Pget_userblock (plist, &usize);
  if (status < 0)
    {
      error_msg (progname, "Can't get user block for file \"%s\"\n",
		 input_file);
      exit (EXIT_FAILURE);
    }

  H5Pclose (plist);
  H5Fclose (ifile);

  ufid = HDopen (ub_file, O_RDONLY, 0);

  if (ufid < 0)
    {
      error_msg (progname, "unable to open user block file \"%s\"\n",
		 ub_file);
      exit (EXIT_FAILURE);
    }

  res = stat (ub_file, &sbuf);

  if (res < 0)
    {
      error_msg (progname, "Can't stat file \"%s\"\n", ub_file);
      exit (EXIT_FAILURE);
    }

  fsize = sbuf.st_size;

  h5fid = HDopen (input_file, O_RDONLY, 0);

  if (h5fid < 0)
    {
      error_msg (progname, "unable to open HDF5 file for read \"%s\"\n",
		 input_file);
      exit (EXIT_FAILURE);
    }

  res = stat (input_file, &sbuf2);

  if (res < 0)
    {
      error_msg (progname, "Can't stat file \"%s\"\n", input_file);
      exit (EXIT_FAILURE);
    }

  h5fsize = sbuf2.st_size;

  if (output_file == NULL)
    {
      ofid = HDopen (input_file, O_WRONLY, 0);

      if (ofid < 0)
	{
	  error_msg (progname, "unable to open output file \"%s\"\n",
		     output_file);
	  exit (EXIT_FAILURE);
	}
    }
  else
    {
      ofid = HDopen (output_file, O_WRONLY | O_CREAT | O_TRUNC, 0644);

      if (ofid < 0)
	{
	  error_msg (progname, "unable to create output file \"%s\"\n",
		     output_file);
	  exit (EXIT_FAILURE);
	}
    }

  newubsize = compute_user_block_size ((hsize_t) fsize);

  startub = usize;

  if (usize > 0)
    {
      if (do_clobber == TRUE)
	{
	  /* where is max of the current size or the new UB */
	  if (usize > newubsize)
	    {
	      newubsize = usize;
	    }
	  startub = 0;		/*blast the old */
	}
      else
	{
	  /* add new ub to current ublock, pad to new offset */
	  newubsize += usize;
	  newubsize = compute_user_block_size ((hsize_t) newubsize);
	}
    }

  /* copy the HDF5 from starting at usize to starting at newubsize:
   *  makes room at 'from' for new ub */
  /* if no current ub, usize is 0 */
  copy_some_to_file (h5fid, ofid, usize, newubsize,
		     (ssize_t) (h5fsize - usize));

  /* copy the old ub to the beginning of the new file */
  if (!do_clobber)
    {
      where =
	copy_some_to_file (h5fid, ofid, (hsize_t) 0, (hsize_t) 0,
			   (ssize_t) usize);
    }

  /* copy the new ub to the end of the ub */
  where = copy_some_to_file (ufid, ofid, (hsize_t) 0, startub, (ssize_t) - 1);

  /* pad the ub */
  where = write_pad (ofid, where);


  HDclose (ufid);
  HDclose (h5fid);
  HDclose (ofid);

  return d_status;
}