bool ReflectometryReductionOneAuto::processGroups() {
auto group = AnalysisDataService::Instance().retrieveWS<WorkspaceGroup>(
getPropertyValue("InputWorkspace"));
const std::string outputIvsQ = this->getPropertyValue("OutputWorkspace");
const std::string outputIvsLam =
this->getPropertyValue("OutputWorkspaceWavelength");
// Create a copy of ourselves
Algorithm_sptr alg = this->createChildAlgorithm(
this->name(), -1, -1, this->isLogging(), this->version());
alg->setChild(false);
alg->setRethrows(true);
// Copy all the non-workspace properties over
std::vector<Property *> props = this->getProperties();
for (auto prop = props.begin(); prop != props.end(); ++prop) {
if (*prop) {
IWorkspaceProperty *wsProp = dynamic_cast<IWorkspaceProperty *>(*prop);
if (!wsProp)
alg->setPropertyValue((*prop)->name(), (*prop)->value());
}
}
// Check if the transmission runs are groups or not
const std::string firstTrans = this->getPropertyValue("FirstTransmissionRun");
WorkspaceGroup_sptr firstTransG;
if (!firstTrans.empty()) {
auto firstTransWS =
AnalysisDataService::Instance().retrieveWS<Workspace>(firstTrans);
firstTransG = boost::dynamic_pointer_cast<WorkspaceGroup>(firstTransWS);
if (!firstTransG)
alg->setProperty("FirstTransmissionRun", firstTrans);
else if (group->size() != firstTransG->size())
throw std::runtime_error("FirstTransmissionRun WorkspaceGroup must be "
"the same size as the InputWorkspace "
"WorkspaceGroup");
}
const std::string secondTrans =
this->getPropertyValue("SecondTransmissionRun");
WorkspaceGroup_sptr secondTransG;
if (!secondTrans.empty()) {
auto secondTransWS =
AnalysisDataService::Instance().retrieveWS<Workspace>(secondTrans);
secondTransG = boost::dynamic_pointer_cast<WorkspaceGroup>(secondTransWS);
if (!secondTransG)
alg->setProperty("SecondTransmissionRun", secondTrans);
else if (group->size() != secondTransG->size())
throw std::runtime_error("SecondTransmissionRun WorkspaceGroup must be "
"the same size as the InputWorkspace "
"WorkspaceGroup");
}
std::vector<std::string> IvsQGroup, IvsLamGroup;
// Execute algorithm over each group member (or period, if this is
// multiperiod)
size_t numMembers = group->size();
for (size_t i = 0; i < numMembers; ++i) {
const std::string IvsQName =
outputIvsQ + "_" + boost::lexical_cast<std::string>(i + 1);
const std::string IvsLamName =
outputIvsLam + "_" + boost::lexical_cast<std::string>(i + 1);
alg->setProperty("InputWorkspace", group->getItem(i)->name());
alg->setProperty("OutputWorkspace", IvsQName);
alg->setProperty("OutputWorkspaceWavelength", IvsLamName);
// Handle transmission runs
if (firstTransG)
alg->setProperty("FirstTransmissionRun", firstTransG->getItem(i)->name());
if (secondTransG)
alg->setProperty("SecondTransmissionRun",
secondTransG->getItem(i)->name());
alg->execute();
IvsQGroup.push_back(IvsQName);
IvsLamGroup.push_back(IvsLamName);
// We use the first group member for our thetaout value
if (i == 0)
this->setPropertyValue("ThetaOut", alg->getPropertyValue("ThetaOut"));
}
// Group the IvsQ and IvsLam workspaces
Algorithm_sptr groupAlg = this->createChildAlgorithm("GroupWorkspaces");
groupAlg->setChild(false);
groupAlg->setRethrows(true);
groupAlg->setProperty("InputWorkspaces", IvsLamGroup);
groupAlg->setProperty("OutputWorkspace", outputIvsLam);
groupAlg->execute();
groupAlg->setProperty("InputWorkspaces", IvsQGroup);
groupAlg->setProperty("OutputWorkspace", outputIvsQ);
groupAlg->execute();
// If this is a multiperiod workspace and we have polarization corrections
// enabled
if (this->getPropertyValue("PolarizationAnalysis") !=
noPolarizationCorrectionMode()) {
if (group->isMultiperiod()) {
// Perform polarization correction over the IvsLam group
Algorithm_sptr polAlg =
this->createChildAlgorithm("PolarizationCorrection");
polAlg->setChild(false);
polAlg->setRethrows(true);
polAlg->setProperty("InputWorkspace", outputIvsLam);
polAlg->setProperty("OutputWorkspace", outputIvsLam);
polAlg->setProperty("PolarizationAnalysis",
this->getPropertyValue("PolarizationAnalysis"));
polAlg->setProperty("CPp", this->getPropertyValue(cppLabel()));
polAlg->setProperty("CRho", this->getPropertyValue(crhoLabel()));
polAlg->setProperty("CAp", this->getPropertyValue(cApLabel()));
polAlg->setProperty("CAlpha", this->getPropertyValue(cAlphaLabel()));
polAlg->execute();
// Now we've overwritten the IvsLam workspaces, we'll need to recalculate
// the IvsQ ones
alg->setProperty("FirstTransmissionRun", "");
alg->setProperty("SecondTransmissionRun", "");
for (size_t i = 0; i < numMembers; ++i) {
const std::string IvsQName =
outputIvsQ + "_" + boost::lexical_cast<std::string>(i + 1);
const std::string IvsLamName =
outputIvsLam + "_" + boost::lexical_cast<std::string>(i + 1);
alg->setProperty("InputWorkspace", IvsLamName);
alg->setProperty("OutputWorkspace", IvsQName);
alg->setProperty("OutputWorkspaceWavelength", IvsLamName);
alg->execute();
}
} else {
g_log.warning("Polarization corrections can only be performed on "
"multiperiod workspaces.");
}
}
// We finished successfully
this->setPropertyValue("OutputWorkspace", outputIvsQ);
this->setPropertyValue("OutputWorkspaceWavelength", outputIvsLam);
setExecuted(true);
notificationCenter().postNotification(
new FinishedNotification(this, isExecuted()));
return true;
}
bool ReflectometryReductionOneAuto::processGroups() {
// isPolarizationCorrectionOn is used to decide whether
// we should process our Transmission WorkspaceGroup members
// as individuals (not multiperiod) when PolarizationCorrection is off,
// or sum over all of the workspaces in the group
// and used that sum as our TransmissionWorkspace when PolarizationCorrection
// is on.
const bool isPolarizationCorrectionOn =
this->getPropertyValue("PolarizationAnalysis") !=
noPolarizationCorrectionMode();
// Get our input workspace group
auto group = AnalysisDataService::Instance().retrieveWS<WorkspaceGroup>(
getPropertyValue("InputWorkspace"));
// Get name of IvsQ workspace
const std::string outputIvsQ = this->getPropertyValue("OutputWorkspace");
// Get name of IvsLam workspace
const std::string outputIvsLam =
this->getPropertyValue("OutputWorkspaceWavelength");
// Create a copy of ourselves
Algorithm_sptr alg = this->createChildAlgorithm(
this->name(), -1, -1, this->isLogging(), this->version());
alg->setChild(false);
alg->setRethrows(true);
// Copy all the non-workspace properties over
std::vector<Property *> props = this->getProperties();
for (auto &prop : props) {
if (prop) {
IWorkspaceProperty *wsProp = dynamic_cast<IWorkspaceProperty *>(prop);
if (!wsProp)
alg->setPropertyValue(prop->name(), prop->value());
}
}
// Check if the transmission runs are groups or not
const std::string firstTrans = this->getPropertyValue("FirstTransmissionRun");
WorkspaceGroup_sptr firstTransG;
if (!firstTrans.empty()) {
auto firstTransWS =
AnalysisDataService::Instance().retrieveWS<Workspace>(firstTrans);
firstTransG = boost::dynamic_pointer_cast<WorkspaceGroup>(firstTransWS);
if (!firstTransG) {
// we only have one transmission workspace, so we use it as it is.
alg->setProperty("FirstTransmissionRun", firstTrans);
} else if (group->size() != firstTransG->size() &&
!isPolarizationCorrectionOn) {
// if they are not the same size then we cannot associate a transmission
// group workspace member with every input group workpspace member.
throw std::runtime_error("FirstTransmissionRun WorkspaceGroup must be "
"the same size as the InputWorkspace "
"WorkspaceGroup");
}
}
const std::string secondTrans =
this->getPropertyValue("SecondTransmissionRun");
WorkspaceGroup_sptr secondTransG;
if (!secondTrans.empty()) {
auto secondTransWS =
AnalysisDataService::Instance().retrieveWS<Workspace>(secondTrans);
secondTransG = boost::dynamic_pointer_cast<WorkspaceGroup>(secondTransWS);
if (!secondTransG)
// we only have one transmission workspace, so we use it as it is.
alg->setProperty("SecondTransmissionRun", secondTrans);
else if (group->size() != secondTransG->size() &&
!isPolarizationCorrectionOn) {
// if they are not the same size then we cannot associate a transmission
// group workspace member with every input group workpspace member.
throw std::runtime_error("SecondTransmissionRun WorkspaceGroup must be "
"the same size as the InputWorkspace "
"WorkspaceGroup");
}
}
std::vector<std::string> IvsQGroup, IvsLamGroup;
// Execute algorithm over each group member (or period, if this is
// multiperiod)
size_t numMembers = group->size();
for (size_t i = 0; i < numMembers; ++i) {
const std::string IvsQName =
outputIvsQ + "_" + boost::lexical_cast<std::string>(i + 1);
const std::string IvsLamName =
outputIvsLam + "_" + boost::lexical_cast<std::string>(i + 1);
// If our transmission run is a group and PolarizationCorrection is on
// then we sum our transmission group members.
//
// This is done inside of the for loop to avoid the wrong workspace being
// used when these arguments are passed through to the exec() method.
// If this is not set in the loop, exec() will fetch the first workspace
// from the specified Transmission Group workspace that the user entered.
if (firstTransG && isPolarizationCorrectionOn) {
auto firstTransmissionSum = sumOverTransmissionGroup(firstTransG);
alg->setProperty("FirstTransmissionRun", firstTransmissionSum);
}
if (secondTransG && isPolarizationCorrectionOn) {
auto secondTransmissionSum = sumOverTransmissionGroup(secondTransG);
alg->setProperty("SecondTransmissionRun", secondTransmissionSum);
}
// Otherwise, if polarization correction is off, we process them
// using one transmission group member at a time.
if (firstTransG && !isPolarizationCorrectionOn) // polarization off
alg->setProperty("FirstTransmissionRun", firstTransG->getItem(i)->name());
if (secondTransG && !isPolarizationCorrectionOn) // polarization off
alg->setProperty("SecondTransmissionRun",
secondTransG->getItem(i)->name());
alg->setProperty("InputWorkspace", group->getItem(i)->name());
alg->setProperty("OutputWorkspace", IvsQName);
alg->setProperty("OutputWorkspaceWavelength", IvsLamName);
alg->execute();
MatrixWorkspace_sptr tempFirstTransWS =
alg->getProperty("FirstTransmissionRun");
IvsQGroup.push_back(IvsQName);
IvsLamGroup.push_back(IvsLamName);
// We use the first group member for our thetaout value
if (i == 0)
this->setPropertyValue("ThetaOut", alg->getPropertyValue("ThetaOut"));
}
// Group the IvsQ and IvsLam workspaces
Algorithm_sptr groupAlg = this->createChildAlgorithm("GroupWorkspaces");
groupAlg->setChild(false);
groupAlg->setRethrows(true);
groupAlg->setProperty("InputWorkspaces", IvsLamGroup);
groupAlg->setProperty("OutputWorkspace", outputIvsLam);
groupAlg->execute();
groupAlg->setProperty("InputWorkspaces", IvsQGroup);
groupAlg->setProperty("OutputWorkspace", outputIvsQ);
groupAlg->execute();
// If this is a multiperiod workspace and we have polarization corrections
// enabled
if (isPolarizationCorrectionOn) {
if (group->isMultiperiod()) {
// Perform polarization correction over the IvsLam group
Algorithm_sptr polAlg =
this->createChildAlgorithm("PolarizationCorrection");
polAlg->setChild(false);
polAlg->setRethrows(true);
polAlg->setProperty("InputWorkspace", outputIvsLam);
polAlg->setProperty("OutputWorkspace", outputIvsLam);
polAlg->setProperty("PolarizationAnalysis",
this->getPropertyValue("PolarizationAnalysis"));
polAlg->setProperty("CPp", this->getPropertyValue(cppLabel()));
polAlg->setProperty("CRho", this->getPropertyValue(crhoLabel()));
polAlg->setProperty("CAp", this->getPropertyValue(cApLabel()));
polAlg->setProperty("CAlpha", this->getPropertyValue(cAlphaLabel()));
polAlg->execute();
// Now we've overwritten the IvsLam workspaces, we'll need to recalculate
// the IvsQ ones
alg->setProperty("FirstTransmissionRun", "");
alg->setProperty("SecondTransmissionRun", "");
for (size_t i = 0; i < numMembers; ++i) {
const std::string IvsQName =
outputIvsQ + "_" + boost::lexical_cast<std::string>(i + 1);
const std::string IvsLamName =
outputIvsLam + "_" + boost::lexical_cast<std::string>(i + 1);
alg->setProperty("InputWorkspace", IvsLamName);
alg->setProperty("OutputWorkspace", IvsQName);
alg->setProperty("CorrectionAlgorithm", "None");
alg->setProperty("OutputWorkspaceWavelength", IvsLamName);
alg->execute();
}
} else {
g_log.warning("Polarization corrections can only be performed on "
"multiperiod workspaces.");
}
}
// We finished successfully
this->setPropertyValue("OutputWorkspace", outputIvsQ);
this->setPropertyValue("OutputWorkspaceWavelength", outputIvsLam);
setExecuted(true);
notificationCenter().postNotification(
new FinishedNotification(this, isExecuted()));
return true;
}
