void TCGADataNormalizer::exportToFile(double positiveValue,
double negativeValue) {
ptrToData->buildDataMatrix();
std::ofstream outputStreamSamples(HEINZ_SAMPLES_LIST);
const auto &dataMatrix = ptrToData->getDataMatrixHandler();
unsigned int N = dataMatrix.cols();
for (unsigned int i = 0; i < N; ++i) {
std::string outputFilename =
ptrToData->getPatientsHandler()[i].toString();
outputStreamSamples << outputFilename << std::endl;
std::ofstream outputStream(
HEINZ_INPUT_DIRECTORY
+ removeTrailingZeros(
std::to_string(std::fabs(negativeValue))) + '_'
+ outputFilename + ".txt");
for (unsigned int j = 0; j < dataMatrix.rows(); ++j) {
outputStream << ptrToData->getGeneListHandler()[j].first << " ";
if (dataMatrix(j, i) > 0.5) {
outputStream << positiveValue << std::endl;
} else {
outputStream << negativeValue << std::endl;
}
}
ClusterXX::Utilities::printAdvancement(i, N);
}
}
void HomogMatrixPub::onNewData() {
int found = in_found.read();
out_found.write(found);
plik.open( "/home/mwegiere/DCL/ServoVisionObjectRecognition/src/Components/HomogMatrixPub/T_DC.txt", std::ios::app | ios::out);
Types::HomogMatrix homogMatrix;
float tmp[16]={0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
if(!in_matrix.empty()){
int k = 0;
homogMatrix = in_matrix.read();
cv::Matx44d dataMatrix = (cv::Matx44d)homogMatrix;
for (int i=0; i<4; ++i)
for (int j=0; j<4; ++j){
tmp[k] = (float)dataMatrix(i,j);
plik<<tmp[k];
plik<<'\n';
++k;
}
}
struct timespec currentTime;
currentTime.tv_nsec = 0;
currentTime.tv_sec = 0;
if(clock_gettime(CLOCK_REALTIME, ¤tTime) == -1){
LOG(LFATAL) << "clock_gettime() failed. " << strerror(errno);
}
//long int time_nsec_pocz = in_time_nsec_pocz.read();
//long int time_sec_pocz = in_time_sec_pocz.read();
/*registerStream("out_time_nsec_pocz", &out_time_nsec_pocz);
registerStream("out_time_sec_pocz", &out_time_sec_pocz);
registerStream("out_time_nsec_kon", &out_time_nsec_kon);
registerStream("out_time_sec_kon", &out_time_sec_kon);*/
//uwzględnienie czasu triggera
//long int trigger_nsec = 25000000;
//time_nsec_pocz += trigger_nsec;
//out_time_nsec_pocz.write(time_nsec_pocz);
//out_time_sec_pocz.write(time_sec_pocz);
//out_time_nsec_kon.write(currentTime.tv_nsec);
//out_time_sec_kon.write(currentTime.tv_sec);
long int sec = static_cast<long int>(currentTime.tv_sec);
std::vector<float> out_homogMatrix (tmp, tmp + sizeof(tmp) / sizeof(float) );
out_matrix.write(out_homogMatrix);
plik.close();
//CLOG(LINFO) << "time_nsec_pocz: " << time_nsec_pocz;
//CLOG(LINFO) << "time_sec_pocz: " << time_sec_pocz;
//CLOG(LINFO) << "time_nsec_kon: " << currentTime.tv_nsec;
//CLOG(LINFO) << "time_sec_kon: " << sec;
}
