C++ (Cpp) dnaOrAaScoreMatch Examples

Example #1

File: supStitch.c Project: davidhoover/kent

static int bioScoreMatch(boolean isProt, char *a, char *b, int size)
/* Return score of match (no inserts) between two bio-polymers. */
{
if (isProt)
    {
    return dnaOrAaScoreMatch(a, b, size, 2, -1, 'X');
    }
else
    {
    return dnaOrAaScoreMatch(a, b, size, 1, -1, 'n');
    }
}

Example #2

File: dnautil.c Project: ma-compbio/FusionHunter

int dnaScoreMatch(DNA *a, DNA *b, int size)
/* Compare two pieces of DNA base by base. Total mismatches are
 * subtracted from total matches and returned as score. 'N's
 * neither hurt nor help score. */
{
    return dnaOrAaScoreMatch(a, b, size, 1, -1, 'n');
}

Example #3

File: dnautil.c Project: ma-compbio/FusionHunter

int aaScoreMatch(AA *a, AA *b, int size)
/* Compare two peptides aa by aa. */
{
    return dnaOrAaScoreMatch(a, b, size, 2, -1, 'X');
}