void checkMrnaPartition(struct gbSelect* select) /* Check an mRNA partition. For genbank, check all ESTs against * this mRNA partation. */ { struct hashCookie cookie; struct hashEl* hel; gbReleaseLoadProcessed(select); struct gbSelect* prevSelect = gbProcessedGetPrevRel(select); if (prevSelect != NULL) gbReleaseLoadProcessed(prevSelect); gbVerbEnter(2, "checking %s", gbSelectDesc(select)); cookie = hashFirst(select->release->entryTbl); while ((hel = hashNext(&cookie)) != NULL) checkOrgCat(hel->val, prevSelect); gbVerbLeave(2, "checking %s", gbSelectDesc(select)); if (select->release->srcDb == GB_GENBANK) checkEstPartitions(select->release); gbReleaseUnload(select->release); if (prevSelect != NULL) { gbReleaseUnload(prevSelect->release); freeMem(prevSelect); } }
void checkEstPartition(struct gbRelease* mrnaRelease, struct gbSelect* select) /* Check an EST partition */ { struct hashCookie cookie; struct hashEl* hel; gbVerbEnter(2, "checking %s", gbSelectDesc(select)); gbReleaseLoadProcessed(select); struct gbSelect* prevSelect = gbProcessedGetPrevRel(select); if (prevSelect != NULL) gbReleaseLoadProcessed(prevSelect); cookie = hashFirst(select->release->entryTbl); while ((hel = hashNext(&cookie)) != NULL) checkEst(mrnaRelease, hel->val, prevSelect); gbReleaseUnload(select->release); if (prevSelect != NULL) { gbReleaseUnload(prevSelect->release); freeMem(prevSelect); } gbVerbLeave(2, "checking %s", gbSelectDesc(select)); }