/*---------------------------------------------------------------------------*/
void
uip_ds6_select_src(uip_ipaddr_t *src, uip_ipaddr_t *dst)
{
uint8_t best = 0; /* number of bit in common with best match */
uint8_t n = 0;
uip_ds6_addr_t *matchaddr = NULL;
if(!uip_is_addr_link_local(dst) &&
(!uip_is_addr_mcast(dst) || uip_is_addr_routable_mcast(dst))) {
/* find longest match */
for(locaddr = uip_ds6_if.addr_list;
locaddr < uip_ds6_if.addr_list + UIP_DS6_ADDR_NB; locaddr++) {
/* Only preferred global (not link-local) addresses */
if(locaddr->isused && locaddr->state == ADDR_PREFERRED &&
!uip_is_addr_link_local(&locaddr->ipaddr)) {
n = get_match_length(dst, &locaddr->ipaddr);
if(n >= best) {
best = n;
matchaddr = locaddr;
}
}
}
} else {
matchaddr = uip_ds6_get_link_local(ADDR_PREFERRED);
}
/* use the :: (unspecified address) as source if no match found */
if(matchaddr == NULL) {
uip_create_unspecified(src);
} else {
uip_ipaddr_copy(src, &matchaddr->ipaddr);
}
}
int SRAssembler::do_alignment(int round, int lib_idx, int idx) {
Library lib = this->libraries[lib_idx];
logger->info("Aligning: round = " + int2str(round) + " Lib (" + int2str(lib_idx+1) + "/" + int2str(this->libraries.size()) + "), Reads (" + int2str(idx) + "/" + int2str(lib.get_num_parts()) + ")");
Aligner* aligner = get_aligner(round);
string program_name = aligner->get_program_name();
if (round == 1)
program_name += "_init";
Params params = this->read_param_file(program_name);
aligner->do_alignment(get_index_name(round), get_type(round), get_match_length(round), get_mismatch_allowed(round), lib.get_split_file_name(idx, aligner->get_format()), params, get_output_file_name(round, lib_idx, idx));
int ret = aligner->parse_output(get_output_file_name(round, lib_idx, idx), mapped_reads, lib.get_split_file_name(idx, lib.get_format()), lib.get_matched_left_read_name(round, idx), lib.get_matched_right_read_name(round, idx), fastq_format, lib.get_format());
string cmd = "rm -f " + get_output_file_name(round, lib_idx, idx);
save_mapped_reads(round);
run_shell_command(cmd);
return ret;
}
static int
single_side_pattern_match(sample **audio_buf,
const audio_format **audio_fmt,
int nbufs,
int missing,
int consec_lost)
{
sample *pat, *dst;
uint16_t match_length;
int remain, bytes_per_sample, buffer_samples, match_samples;
if ((audio_buf[missing - 1] == NULL) ||
(nbufs < 2)) {
debug_msg("no prior audio\n");
return FALSE;
}
bytes_per_sample = audio_fmt[missing]->bits_per_sample *
audio_fmt[missing]->channels / 8;
buffer_samples = audio_fmt[missing - 1]->bytes_per_block /
bytes_per_sample * audio_fmt[missing - 1]->channels;
match_samples = MATCH_WINDOW * audio_fmt[missing - 1]->channels,
match_length = get_match_length(audio_buf[missing - 1],
buffer_samples,
match_samples,
audio_fmt[missing - 1]->sample_rate);
remain = buffer_samples;
pat = audio_buf[missing-1] + (remain - match_length);
dst = audio_buf[missing];
while(remain > 0) {
match_length = min(remain, match_length);
memcpy(dst, pat, match_length * sizeof(sample));
remain -= match_length;
dst += match_length;
}
if (consec_lost > 0) {
fade_buffer(audio_buf[missing], audio_fmt[missing], consec_lost);
}
return TRUE;
}
/*---------------------------------------------------------------------------*/
void
uip_netif_select_src(uip_ipaddr_t *src, uip_ipaddr_t *dst)
{
u8_t best = 0; /* number of bit in common with best match*/
u8_t n = 0;
u8_t index = 0;
if(!uip_is_addr_link_local(dst) && !uip_is_addr_mcast(dst)) {
for(i = 1; i < UIP_CONF_NETIF_MAX_ADDRESSES; ++i) {
if(uip_netif_physical_if.addresses[i].state == PREFERRED){
n = get_match_length(dst, &(uip_netif_physical_if.addresses[i].ipaddr));
if(n >= best){
best = n;
index = i;
}
}
}
}
uip_ipaddr_copy(src, &(uip_netif_physical_if.addresses[index].ipaddr));
return;
}
