C++ (Cpp) gffr Examples

Example #1

File: gtf_tracking.cpp Project: Al3n70rn/ballgown

void read_transcripts(FILE* f, GList<GSeqData>& seqdata, bool keepAttrs) {
	rewind(f);
	GffReader gffr(f, true); //loading only recognizable transcript features
	gffr.showWarnings(gtf_tracking_verbose);

	//          keepAttrs    mergeCloseExons   noExonAttrs
	gffr.readAll(keepAttrs,          true,        true);

	//                               is_ref?    check_for_dups,
	parse_mRNAs(gffr.gflst, seqdata, false,       0);
}

Example #2

File: gtf_tracking.cpp Project: bowhan/gffcompare

void read_transcripts(FILE* f, GList<GSeqData>& seqdata, 
#ifdef CUFFLINKS
  boost::crc_32_type& crc_result,
#endif
   bool keepAttrs) {
	rewind(f);
	GffReader gffr(f, true); //loading only recognizable transcript features
	gffr.showWarnings(gtf_tracking_verbose);

	//          keepAttrs    mergeCloseExons   noExonAttrs
	gffr.readAll(keepAttrs,          true,        true);
#ifdef CUFFLINKS
     crc_result = gffr.current_crc_result();
#endif
	//                               is_ref?    check_for_dups,
	parse_mRNAs(gffr.gflst, seqdata, false,       0);
}