C++ (Cpp) gpRangeIntersection Examples

Example #1

File: altSplice.c Project: bowhan/kent

static int gpBedBasesShared(struct genePred *gp, struct bed *bed)
/* Return number of bases genePred and bed share. */
{
int intersect = 0;
int i, blockCount = bed->blockCount;
int s,e;
for (i=0; i<blockCount; ++i)
    {
    s = bed->chromStart + bed->chromStarts[i];
    e = s + bed->blockSizes[i];
    intersect += gpRangeIntersection(gp, s, e);
    }
return intersect;
}

Example #2

File: mrnaDescriptions.c Project: CEpBrowser/CEpBrowser--from-UCSC-CGI-BIN

static int basesShared(struct genePred *gp, struct psl *psl)
/* Return number of bases a&b share. */
{
int intersect = 0;
int i, blockCount = psl->blockCount;
int s,e;
for (i=0; i<blockCount; ++i)
    {
    s = psl->tStarts[i];
    e = s + psl->blockSizes[i];
    if (psl->strand[1] == '-')
	reverseIntRange(&s, &e, psl->tSize);
    intersect += gpRangeIntersection(gp, s, e);
    }
return intersect;
}