static GtUword applycheckfunctiontosimpleoptions(
Checkcmppairfuntype checkfunction,
const Cmppairwiseopt *opt)
{
if (gt_str_array_size(opt->strings) > 0)
{
bool forward = true;
while (true)
{
checkfunction(forward,
(const GtUchar *) gt_str_array_get(opt->strings,0),
(GtUword) strlen(gt_str_array_get(opt->strings,0)),
(const GtUchar *) gt_str_array_get(opt->strings,1UL),
(GtUword) strlen(gt_str_array_get(opt->strings,1UL)));
if (!forward)
{
break;
}
forward = false;
}
return 2UL; /* number of testcases */
}
if (gt_str_array_size(opt->files) > 0)
{
if (opt->fasta)
{
GtUword i, j;
for (i = 0; i < gt_str_array_size(opt->fastasequences0); i++)
{
for (j = 0; j < gt_str_array_size(opt->fastasequences1); j++)
{
checkfunction(true,
(const GtUchar *) gt_str_array_get(opt->fastasequences0,i),
(GtUword) strlen(gt_str_array_get(opt->fastasequences0,i)),
(const GtUchar *) gt_str_array_get(opt->fastasequences1,j),
(GtUword) strlen(gt_str_array_get(opt->fastasequences1,j)));
}
}
}
else
{
gt_runcheckfunctionontwofiles(checkfunction,
gt_str_array_get(opt->files,0),
gt_str_array_get(opt->files,1UL));
}
return 2UL;
}
if (opt->charlistlen != NULL)
{
return gt_runcheckfunctiononalphalen(checkfunction,
gt_str_get(opt->charlistlen->charlist),
opt->charlistlen->len);
}
if (gt_str_length(opt->text) > 0)
{
return gt_runcheckfunctionontext(checkfunction, gt_str_get(opt->text));
}
gt_assert(false);
return 0;
}
static unsigned long applycheckfunctiontosimpleoptions(
Checkcmppairfuntype checkfunction,
const Cmppairwiseopt *opt)
{
if (gt_str_array_size(opt->strings) > 0)
{
bool forward = true;
while (true)
{
checkfunction(forward,
(const GtUchar *) gt_str_array_get(opt->strings,0),
(unsigned long) strlen(gt_str_array_get(opt->strings,0)),
(const GtUchar *) gt_str_array_get(opt->strings,1UL),
(unsigned long) strlen(gt_str_array_get(opt->strings,1UL)));
if (!forward)
{
break;
}
forward = false;
}
return 2UL; /* number of testcases */
}
if (gt_str_array_size(opt->files) > 0)
{
gt_runcheckfunctionontwofiles(checkfunction,
gt_str_array_get(opt->files,0),
gt_str_array_get(opt->files,1UL));
return 2UL;
}
if (opt->charlistlen != NULL)
{
return gt_runcheckfunctiononalphalen(checkfunction,
gt_str_get(opt->charlistlen->charlist),
opt->charlistlen->len);
}
if (gt_str_length(opt->text) > 0)
{
return gt_runcheckfunctionontext(checkfunction,gt_str_get(opt->text));
}
gt_assert(false);
return 0;
}