C++ (Cpp) hard_link_ComplexSequenceEvalSet Examples

Example #1

File: cdnadb.c Project: PlantandFoodResearch/wise2

cDNADB * new_cDNADB(SequenceDB * seqdb)
{
  cDNADB * out;
  ComplexSequenceEvalSet * cses;
  

  if( seqdb == NULL ) {
    warn("No sequencedb - can't make a cDNADB!");
    return NULL;
  }

  /** should check sequence database **/
  cses = default_cDNA_ComplexSequenceEvalSet();

  if( cses->type != SEQUENCE_CDNA ) {
    warn("You can't make a cDNA database with a non SEQUENCE_cDNA cses type [%d]",cses->type);
    return NULL;
  }


  out = cDNADB_alloc();

  out->is_single_seq = FALSE;
  out->sdb  = hard_link_SequenceDB(seqdb);
  out->cses = hard_link_ComplexSequenceEvalSet(cses);
  free_ComplexSequenceEvalSet(cses);

  return out;
}

Example #2

File: genomicdb.c Project: mrmckain/RefTrans

GenomicDB * new_GenomicDB(SequenceDB * seqdb,ComplexSequenceEvalSet * cses,int length_of_N,int repeat_in_cds_score)
{
  GenomicDB * out;

  if( seqdb == NULL || cses == NULL ) {
    warn("Attempting to make GenomicDB from some NULL objects.");
    return NULL;
  }

  /** should check sequence database **/

  if( cses->type != SEQUENCE_GENOMIC ) {
    warn("You can't make a genomic database with a non SEQUENCE_GENOMIC cses type [%d]",cses->type);
    return NULL;
  }


  out = GenomicDB_alloc();

  out->is_single_seq = FALSE;
  out->sdb  = hard_link_SequenceDB(seqdb);
  out->cses = hard_link_ComplexSequenceEvalSet(cses);
  out->length_of_N = length_of_N;
  out->repeat_in_cds_score = repeat_in_cds_score;

  return out;
}