void Vision_Processor::process_and_send(const TimerEvent& event){
if(_timer.isValid()){
if(image_processing() == 0){
send_msg();
clear_msg();
}else {
ROS_INFO("[VISION PROCESSING]: Message without data sent.");
_log_file << "Message without data sent due to error in image processing.";
clear_msg();
_ic.get_out_pub().publish(_msg);
}
}
}
int main(int argc, char **argv)
{
InitializeMagick("/");
#ifndef DEBUG
if (argc != 4) {
printf("\n************************************************************************\n");
printf("Please provide paramter and TWO file locations for image reconstruction!\n");
printf("For example: ./TissueReconstruction restacking file_name file_output \n");
printf("************************************************************************\n");
return 0;
}
else{
char *f_imagePath = strdup(argv[2]);
char *s_imagePath = strdup(argv[3]);
char *f_ptr, *s_ptr;
int ch = '/';
f_ptr = strrchr(f_imagePath, ch);
s_ptr = strrchr(s_imagePath, ch);
char *cht = "/";
if (f_ptr != cht || s_ptr != cht ) {
if(f_ptr != cht)
asprintf(&f_imagePath, "%s/", f_imagePath);
if(s_ptr != cht){
struct stat st = {0};
asprintf(&s_imagePath, "%s/Restacking/", s_imagePath);
if (stat(s_imagePath, &st) == -1)
mkdir(s_imagePath, 0700);
}
}
if (strcmp(argv[1], "processing") == 0)
image_processing(f_imagePath, s_imagePath);
else if (strcmp(argv[1], "restacking") == 0)
restacking(f_imagePath, 0, 1000, s_imagePath);
else if (strcmp(argv[1], "raw") == 0){
asprintf(&s_imagePath, "%stissue.raw\n", s_imagePath);
printf("Create a new RAW file in : %s\n", s_imagePath);
dumpStackIntoRawFile(f_imagePath, s_imagePath);
}
free(f_imagePath);
free(s_imagePath);
}
#endif
#ifdef DEBUG
/*
** image processing before restacking - max contrast, otsu-throsholding, cross correlation, image deconvolution
*/
//image_processing(FILE_PATH, FILE_MAX_OUTPUT);
//image_correction("/Users/adam/Documents/blockface_allbrains/3DOutput/y/", FILE_MAX_OUTPUT);
//image_processing("/Users/adam/Desktop/image/JPG_CROP/", "/Users/adam/Desktop/image/JPG_CROP_GRAY");
//check_raw(FILE_OUT_RAW);
/*
** restack images - Parameters:(source dir, start slide, end slide, output dir)
*/
//restacking(FILE_PATH,0, 1000, FILE_MAX_OUTPUT);
/*
** final - dump three planes to RAW file for Tissuestack used!
*/
//dumpStackIntoRawFile("/Users/adam/Desktop/image/Reconstruction/", FILE_OUT_RAW);
#endif
DestroyMagick();
return (0);
}
