Example #1
1
int
main(int argc, char **argv)
{
  int status;
  char* env = NULL;

  env = getenv("GPAW_OFFLOAD");
  if (env) {
      errno = 0;
      gpaw_offload_enabled = strtol(env, NULL, 10);
      if (errno) {
        fprintf(stderr, 
                "Wrong value for for GPAW_OFFLOAD.\nShould be either 0 or 1, but was %s\n",
                env);
      }
  }
  fprintf(stderr, "GPAW info: GPAW_OFFLOAD=%d\n", gpaw_offload_enabled);
  
#ifdef CRAYPAT
  PAT_region_begin(1, "C-Initializations");
#endif

#ifndef GPAW_OMP
  MPI_Init(&argc, &argv);
#else
  int granted;
  MPI_Init_thread(&argc, &argv, MPI_THREAD_MULTIPLE, &granted);
  if(granted != MPI_THREAD_MULTIPLE) exit(1);
#endif // GPAW_OMP

// Get initial timing
  double t0 = MPI_Wtime();

#ifdef GPAW_PERFORMANCE_REPORT
  gpaw_perf_init();
#endif

#ifdef GPAW_MPI_MAP
  int tag = 99;
  int myid, numprocs, i, procnamesize;
  char procname[MPI_MAX_PROCESSOR_NAME];
  MPI_Comm_size(MPI_COMM_WORLD, &numprocs );
  MPI_Comm_rank(MPI_COMM_WORLD, &myid );
  MPI_Get_processor_name(procname, &procnamesize);
  if (myid > 0) {
      MPI_Send(&procnamesize, 1, MPI_INT, 0, tag, MPI_COMM_WORLD);
      MPI_Send(procname, procnamesize, MPI_CHAR, 0, tag, MPI_COMM_WORLD);
  }
  else {
      printf("MPI_COMM_SIZE is %d \n", numprocs);
      printf("%s \n", procname);
      
      for (i = 1; i < numprocs; ++i) {
          MPI_Recv(&procnamesize, 1, MPI_INT, i, tag, MPI_COMM_WORLD, MPI_STATUS_IGNORE);
          MPI_Recv(procname, procnamesize, MPI_CHAR, i, tag, MPI_COMM_WORLD, MPI_STATUS_IGNORE);
          printf("%s \n", procname);
      }
  }
#endif // GPAW_MPI_MAP

#ifdef GPAW_MPI_DEBUG
  // Default Errhandler is MPI_ERRORS_ARE_FATAL
  MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN);
#endif

  // Progname seems to be needed in some circumstances to resolve
  // correct default sys.path
  Py_SetProgramName(argv[0]);

  Py_Initialize();

#pragma offload target(mic) if(gpaw_offload_enabled)
    {
        init_openmp();
    }
  
  if (PyType_Ready(&MPIType) < 0)
    return -1;

  if (PyType_Ready(&LFCType) < 0)
    return -1;
  if (PyType_Ready(&LocalizedFunctionsType) < 0)
    return -1;
  if (PyType_Ready(&OperatorType) < 0)
    return -1;
  if (PyType_Ready(&SplineType) < 0)
    return -1;
  if (PyType_Ready(&TransformerType) < 0)
    return -1;
  if (PyType_Ready(&XCFunctionalType) < 0)
    return -1;
  if (PyType_Ready(&lxcXCFunctionalType) < 0)
    return -1;

  PyObject* m = Py_InitModule3("_gpaw", functions,
             "C-extension for GPAW\n\n...\n");
  if (m == NULL)
    return -1;

  Py_INCREF(&MPIType);
  PyModule_AddObject(m, "Communicator", (PyObject *)&MPIType);

  // Add initial time to _gpaw object
  PyModule_AddObject(m, "time0", PyFloat_FromDouble(t0));

  Py_INCREF(&LFCType);
  Py_INCREF(&LocalizedFunctionsType);
  Py_INCREF(&OperatorType);
  Py_INCREF(&SplineType);
  Py_INCREF(&TransformerType);
  Py_INCREF(&XCFunctionalType);
  Py_INCREF(&lxcXCFunctionalType);

#ifdef GPAW_WITH_HDF5
  init_gpaw_hdf5();
#endif
  import_array1(-1);
  MPI_Barrier(MPI_COMM_WORLD);
#ifdef CRAYPAT
  PAT_region_end(1);
  PAT_region_begin(2, "all other");
#endif
  status = Py_Main(argc, argv);
#ifdef CRAYPAT
  PAT_region_end(2);
#endif

#ifdef GPAW_PERFORMANCE_REPORT
  gpaw_perf_finalize();
#endif

  MPI_Finalize();
  return status;
}
Example #2
0
int main(int argc,char *argv[]) {
 
  char spinorfilename[100];
  char * filename = NULL;
  int sample=0, ts=0, ss=1, typeflag = 1, t0=0, piononly = 0, ext_sourceflag = 0;
  int is, ic, j, filenameflag = 0, appendflag = 0;
  complex co;
  int c;
  int prec=32;

  verbose = 0;
  g_use_clover_flag = 0;
  nstore = 0;
  L=0;
  T=0;
  
#ifdef MPI
  MPI_Init(&argc, &argv);
#endif

#ifdef OMP
  /* FIXME: in principle this should not be set like this as it could result
    in thread oversubscription when more than one process is run locally
    unfortunately, there does not seem to be a standard way to determine
    the number of "local" MPI processes  */
  omp_num_threads = omp_get_max_threads();
  init_openmp();
#endif

  while ((c = getopt(argc, argv, "h?NCpOEdao:L:T:n:t:s:S:P:")) != -1) {
    switch (c) {
    case 'L':
      L = atoi(optarg);
      LX = L;
      LY = L;
      LZ = L;
      break;
    case 'T':
      T = atoi(optarg);
      T_global = T;
      break;
    case 'N':
      typeflag = 0;
      break;
    case 'd':
      prec = 64;
      break;
    case 'O':
      piononly = 1;
      break;
    case 'n':
      nstore = atoi(optarg);
      break;
    case 's':
      sample = atoi(optarg);
      break;
    case 't':
      t0 = atoi(optarg);
      break;
    case 'S':
      ss = atoi(optarg);
      break;
    case 'P':
      ts = atoi(optarg);
      break;
    case 'o':
      filename = calloc(200, sizeof(char));
      strcpy(filename,optarg);
      break;
    case 'E':
      ext_sourceflag = 1;
      break;
    case 'p':
      filenameflag = 1;
      break;
    case 'a':
      appendflag = 1;
      break;
    case 'h':
    case '?':
    default:
      usage();
      break;
    }
  }
  if(ts == 0) {
    ts = T;
  }
  if(filename == NULL){
    filename = "source";
  } 
  if(L==0 || T==0) {
    if(g_proc_id == 0) {
      fprintf(stderr, "L and T must be specified! Aborting...\n");
      fflush( stderr );
    }
    exit(1);
  }

  tmlqcd_mpi_init(argc, argv);

  j = init_geometry_indices(VOLUMEPLUSRAND);
  if ( j!= 0) {
    fprintf(stderr, "Not enough memory for geometry_indices! Aborting...\n");
    exit(0);
  }
  if(!ext_sourceflag) {
    j = init_spinor_field(VOLUMEPLUSRAND/2, 2);
  }
  else {
    j = init_spinor_field(VOLUMEPLUSRAND/2, 4);
  }
  if ( j!= 0) {
    fprintf(stderr, "Not enough memory for spinor fields! Aborting...\n");
    exit(0);
  }

  /* define the geometry */
  geometry();
  
  if(!piononly) {
    for(is = 0; is < 4; is ++) {
      for(ic = 0; ic < 3; ic++) {
	if(!filenameflag && !appendflag) {
	  sprintf(spinorfilename, "%s.%.4d.%.4d.%.2d.%.2d", filename, nstore, sample, t0, 3*is+ic); 
	}
	else if(!filenameflag && appendflag) {
	  sprintf(spinorfilename, "%s.%.4d.%.4d.%.2d", filename, nstore, sample, t0); 
	}
	else{
	  sprintf(spinorfilename, "%s.%.2d", filename, 3*is+ic); 
	}
	if(!appendflag || (is == 0 && ic ==0)) {
	  printf("Generating source %s!\n", spinorfilename);
	  fflush(stdout);
	}
	
	source_generation_nucleon(g_spinor_field[0], g_spinor_field[1], 
				  is, ic, t0, ts, ss, sample, nstore, typeflag);
	
	co = scalar_prod(g_spinor_field[1], g_spinor_field[1], VOLUME/2, 1);
	if((is == 0 && ic == 0) || appendflag == 0) {
	  write_source_type(0, spinorfilename);
	}
	write_source(g_spinor_field[0], g_spinor_field[1], spinorfilename, 1, prec);
      }
    }
  }
  else {
    if(!ext_sourceflag) {
      if(!filenameflag) {
	sprintf(spinorfilename, "%s.%.4d.%.4d.%.2d", filename, nstore, sample, t0); 
      }
      else {
	sprintf(spinorfilename, "%s", filename); 
      }
      printf("Generating source %s!\n", spinorfilename);
      fflush(stdout);
      source_generation_pion_only(g_spinor_field[0], g_spinor_field[1], 
				  t0, sample, nstore);
      
      co = scalar_prod(g_spinor_field[1], g_spinor_field[1], VOLUME/2, 1);
      write_source_type(0, spinorfilename);
      write_source(g_spinor_field[0], g_spinor_field[1], spinorfilename, 1, prec);
    }
    else {
      if(!filenameflag) {
        sprintf(spinorfilename, "%s.%.4d.%.4d.%.2d.inverted", filename, nstore, sample, t0);
      }
      else {
        sprintf(spinorfilename, "%s.inverted", filename);
      }
      read_lime_spinor(g_spinor_field[0], g_spinor_field[1], spinorfilename, 0);

      printf("Generating ext. pion source %s!\n", spinorfilename);
      extended_pion_source(g_spinor_field[2], g_spinor_field[3],
			   g_spinor_field[0], g_spinor_field[1],
			   t0, 0., 0., 0.);
      if(!filenameflag) {
	sprintf(spinorfilename, "g%s.%.4d.%.4d.%.2d", filename, nstore, sample, t0); 
      }
      else {
	sprintf(spinorfilename, "g%s", filename); 
      }
      write_source_type(0, spinorfilename);
      write_source(g_spinor_field[2], g_spinor_field[3], spinorfilename, 1, prec);
    }
  }

#ifdef MPI
  MPI_Finalize();
#endif
  free_geometry_indices();
  free_spinor_field();
  return(0);
}
Example #3
0
int main(int argc,char *argv[])
{
#ifdef _USE_HALFSPINOR
	#undef _USE_HALFSPINOR
	printf("# WARNING: USE_HALFSPINOR will be ignored (not supported here).\n");
#endif

	if(even_odd_flag)
	{
		even_odd_flag=0;
		printf("# WARNING: even_odd_flag will be ignored (not supported here).\n");
	}
  int j,j_max,k,k_max = 1;
#ifdef HAVE_LIBLEMON
  paramsXlfInfo *xlfInfo;
#endif
  int status = 0;

  static double t1,t2,dt,sdt,dts,qdt,sqdt;
  double antioptaway=0.0;

#ifdef MPI
  static double dt2;

  DUM_DERI = 6;
  DUM_SOLVER = DUM_DERI+2;
  DUM_MATRIX = DUM_SOLVER+6;
  NO_OF_SPINORFIELDS = DUM_MATRIX+2;

#  ifdef OMP
  int mpi_thread_provided;
  MPI_Init_thread(&argc, &argv, MPI_THREAD_SERIALIZED, &mpi_thread_provided);
#  else
  MPI_Init(&argc, &argv);
#  endif
  MPI_Comm_rank(MPI_COMM_WORLD, &g_proc_id);

#else
  g_proc_id = 0;
#endif

  g_rgi_C1 = 1.;

    /* Read the input file */
  if((status = read_input("test_Dslash.input")) != 0) {
    fprintf(stderr, "Could not find input file: test_Dslash.input\nAborting...\n");
    exit(-1);
  }

#ifdef OMP
  init_openmp();
#endif

  tmlqcd_mpi_init(argc, argv);



  if(g_proc_id==0) {
#ifdef SSE
    printf("# The code was compiled with SSE instructions\n");
#endif
#ifdef SSE2
    printf("# The code was compiled with SSE2 instructions\n");
#endif
#ifdef SSE3
    printf("# The code was compiled with SSE3 instructions\n");
#endif
#ifdef P4
    printf("# The code was compiled for Pentium4\n");
#endif
#ifdef OPTERON
    printf("# The code was compiled for AMD Opteron\n");
#endif
#ifdef _GAUGE_COPY
    printf("# The code was compiled with -D_GAUGE_COPY\n");
#endif
#ifdef BGL
    printf("# The code was compiled for Blue Gene/L\n");
#endif
#ifdef BGP
    printf("# The code was compiled for Blue Gene/P\n");
#endif
#ifdef _USE_HALFSPINOR
    printf("# The code was compiled with -D_USE_HALFSPINOR\n");
#endif
#ifdef _USE_SHMEM
    printf("# The code was compiled with -D_USE_SHMEM\n");
#  ifdef _PERSISTENT
    printf("# The code was compiled for persistent MPI calls (halfspinor only)\n");
#  endif
#endif
#ifdef MPI
#  ifdef _NON_BLOCKING
    printf("# The code was compiled for non-blocking MPI calls (spinor and gauge)\n");
#  endif
#endif
    printf("\n");
    fflush(stdout);
  }


#ifdef _GAUGE_COPY
  init_gauge_field(VOLUMEPLUSRAND + g_dbw2rand, 1);
#else
  init_gauge_field(VOLUMEPLUSRAND + g_dbw2rand, 0);
#endif
  init_geometry_indices(VOLUMEPLUSRAND + g_dbw2rand);

  if(even_odd_flag) {
    j = init_spinor_field(VOLUMEPLUSRAND/2, 2*k_max+1);
  }
  else {
    j = init_spinor_field(VOLUMEPLUSRAND, 2*k_max);
  }

  if ( j!= 0) {
    fprintf(stderr, "Not enough memory for spinor fields! Aborting...\n");
    exit(0);
  }
  j = init_moment_field(VOLUME, VOLUMEPLUSRAND + g_dbw2rand);
  if ( j!= 0) {
    fprintf(stderr, "Not enough memory for moment fields! Aborting...\n");
    exit(0);
  }

  if(g_proc_id == 0) {
    fprintf(stdout,"# The number of processes is %d \n",g_nproc);
    printf("# The lattice size is %d x %d x %d x %d\n",
	   (int)(T*g_nproc_t), (int)(LX*g_nproc_x), (int)(LY*g_nproc_y), (int)(g_nproc_z*LZ));
    printf("# The local lattice size is %d x %d x %d x %d\n",
	   (int)(T), (int)(LX), (int)(LY),(int) LZ);
//    if(even_odd_flag) {
//      printf("# benchmarking the even/odd preconditioned Dirac operator\n");
//    }
//    else {
//      printf("# benchmarking the standard Dirac operator\n");
//    }
    fflush(stdout);
  }

  /* define the geometry */
  geometry();
  /* define the boundary conditions for the fermion fields */
  boundary(g_kappa);

#ifdef _USE_HALFSPINOR
  j = init_dirac_halfspinor();
  if ( j!= 0) {
    fprintf(stderr, "Not enough memory for halfspinor fields! Aborting...\n");
    exit(0);
  }
  if(g_sloppy_precision_flag == 1) {
    g_sloppy_precision = 1;
    j = init_dirac_halfspinor32();
    if ( j!= 0) {
      fprintf(stderr, "Not enough memory for 32-Bit halfspinor fields! Aborting...\n");
      exit(0);
    }
  }
#  if (defined _PERSISTENT)
  init_xchange_halffield();
#  endif
#endif

  status = check_geometry();
  if (status != 0) {
    fprintf(stderr, "Checking of geometry failed. Unable to proceed.\nAborting....\n");
    exit(1);
  }
#if (defined MPI && !(defined _USE_SHMEM))
  check_xchange();
#endif

  start_ranlux(1, 123456);
  random_gauge_field(reproduce_randomnumber_flag, g_gauge_field);

#ifdef MPI
  /*For parallelization: exchange the gaugefield */
  xchange_gauge(g_gauge_field);
#endif

	/* the non even/odd case now */
	/*initialize the pseudo-fermion fields*/
	j_max=1;
	sdt=0.;
	for (k=0;k<k_max;k++) {
	  random_spinor_field_lexic(g_spinor_field[k], reproduce_randomnumber_flag, RN_GAUSS);
	}

#ifdef MPI
      MPI_Barrier(MPI_COMM_WORLD);
#endif
      t1 = gettime();

      /* here the actual Dslash */
      D_psi(g_spinor_field[0], g_spinor_field[1]);

      t2 = gettime();
      dt=t2-t1;
#ifdef MPI
      MPI_Allreduce (&dt, &sdt, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#else
      sdt = dt;
#endif

    if(g_proc_id==0) {
      printf("# Time for Dslash %e sec.\n", sdt);
      printf("\n");
      fflush(stdout);
    }

#ifdef HAVE_LIBLEMON
  if(g_proc_id==0) {
    printf("# Performing parallel IO test ...\n");
  }
  xlfInfo = construct_paramsXlfInfo(0.5, 0);
  write_gauge_field( "conf.test", 64, xlfInfo);
  free(xlfInfo);
  if(g_proc_id==0) {
    printf("# done ...\n");
  }
#endif


#ifdef OMP
  free_omp_accumulators();
#endif
  free_gauge_field();
  free_geometry_indices();
  free_spinor_field();
  free_moment_field();
#ifdef MPI
  MPI_Barrier(MPI_COMM_WORLD);
  MPI_Finalize();
#endif
  return(0);
}
Example #4
0
int main(int argc,char *argv[])
{
  FILE *parameterfile = NULL;
  char datafilename[206];
  char parameterfilename[206];
  char conf_filename[50];
  char scalar_filename[50];
  char * input_filename = NULL;
  char * filename = NULL;
  double plaquette_energy;

#ifdef _USE_HALFSPINOR
	#undef _USE_HALFSPINOR
	printf("# WARNING: USE_HALFSPINOR will be ignored (not supported here).\n");
#endif

	if(even_odd_flag)
	{
		even_odd_flag=0;
		printf("# WARNING: even_odd_flag will be ignored (not supported here).\n");
	}
	int j,j_max,k,k_max = 2;
	_Complex double * drvsc;

#ifdef HAVE_LIBLEMON
	paramsXlfInfo *xlfInfo;
#endif
	int status = 0;

	static double t1,t2,dt,sdt,dts,qdt,sqdt;
	double antioptaway=0.0;

#ifdef MPI
	static double dt2;

	DUM_DERI = 6;
	DUM_SOLVER = DUM_DERI+2;
	DUM_MATRIX = DUM_SOLVER+6;
	NO_OF_SPINORFIELDS = DUM_MATRIX+2;

#ifdef OMP
	int mpi_thread_provided;
	MPI_Init_thread(&argc, &argv, MPI_THREAD_SERIALIZED, &mpi_thread_provided);
#else
	MPI_Init(&argc, &argv);
#endif
	MPI_Comm_rank(MPI_COMM_WORLD, &g_proc_id);

#else
	g_proc_id = 0;
#endif

	g_rgi_C1 = 1.;

  process_args(argc,argv,&input_filename,&filename);
  set_default_filenames(&input_filename, &filename);

  /* Read the input file */
  if( (j = read_input(input_filename)) != 0) {
    fprintf(stderr, "Could not find input file: %s\nAborting...\n", input_filename);
    exit(-1);
  }

	if(g_proc_id==0) {
		printf("parameter rho_BSM set to %f\n", rho_BSM);
		printf("parameter eta_BSM set to %f\n", eta_BSM);
		printf("parameter  m0_BSM set to %f\n",  m0_BSM);
	}

#ifdef OMP
	init_openmp();
#endif

	tmlqcd_mpi_init(argc, argv);


	if(g_proc_id==0) {
#ifdef SSE
		printf("# The code was compiled with SSE instructions\n");
#endif
#ifdef SSE2
		printf("# The code was compiled with SSE2 instructions\n");
#endif
#ifdef SSE3
		printf("# The code was compiled with SSE3 instructions\n");
#endif
#ifdef P4
		printf("# The code was compiled for Pentium4\n");
#endif
#ifdef OPTERON
		printf("# The code was compiled for AMD Opteron\n");
#endif
#ifdef _GAUGE_COPY
		printf("# The code was compiled with -D_GAUGE_COPY\n");
#endif
#ifdef BGL
		printf("# The code was compiled for Blue Gene/L\n");
#endif
#ifdef BGP
		printf("# The code was compiled for Blue Gene/P\n");
#endif
#ifdef _USE_HALFSPINOR
		printf("# The code was compiled with -D_USE_HALFSPINOR\n");
#endif
#ifdef _USE_SHMEM
		printf("# The code was compiled with -D_USE_SHMEM\n");
#ifdef _PERSISTENT
		printf("# The code was compiled for persistent MPI calls (halfspinor only)\n");
#endif
#endif
#ifdef MPI
	#ifdef _NON_BLOCKING
		printf("# The code was compiled for non-blocking MPI calls (spinor and gauge)\n");
	#endif
#endif
		printf("\n");
		fflush(stdout);
	}


#ifdef _GAUGE_COPY
	init_gauge_field(VOLUMEPLUSRAND + g_dbw2rand, 1);
#else
	init_gauge_field(VOLUMEPLUSRAND + g_dbw2rand, 0);
#endif
	init_geometry_indices(VOLUMEPLUSRAND + g_dbw2rand);


	j = init_bispinor_field(VOLUMEPLUSRAND, 12);
	if ( j!= 0) {
		fprintf(stderr, "Not enough memory for bispinor fields! Aborting...\n");
		exit(0);
	}

	j = init_spinor_field(VOLUMEPLUSRAND, 12);
	if ( j!= 0) {
		fprintf(stderr, "Not enough memory for spinor fields! Aborting...\n");
		exit(0);
	}

	int numbScalarFields = 4;
	j = init_scalar_field(VOLUMEPLUSRAND, numbScalarFields);
	if ( j!= 0) {
		fprintf(stderr, "Not enough memory for scalar fields! Aborting...\n");
		exit(0);
	}

	drvsc = malloc(18*VOLUMEPLUSRAND*sizeof(_Complex double));

	if(g_proc_id == 0) {
		fprintf(stdout,"# The number of processes is %d \n",g_nproc);
		printf("# The lattice size is %d x %d x %d x %d\n",
		 (int)(T*g_nproc_t), (int)(LX*g_nproc_x), (int)(LY*g_nproc_y), (int)(g_nproc_z*LZ));
		printf("# The local lattice size is %d x %d x %d x %d\n",
		 (int)(T), (int)(LX), (int)(LY),(int) LZ);

		fflush(stdout);
	}

	/* define the geometry */
	geometry();

  j = init_bsm_2hop_lookup(VOLUME);
	if ( j!= 0) {
    // this should not be reached since the init function calls fatal_error anyway
		fprintf(stderr, "Not enough memory for BSM2b 2hop lookup table! Aborting...\n");
		exit(0);
	}

	/* define the boundary conditions for the fermion fields */
  /* for the actual inversion, this is done in invert.c as the operators are iterated through */
  // 
  // For the BSM operator we don't use kappa normalisation,
  // as a result, when twisted boundary conditions are applied this needs to be unity.
  // In addition, unlike in the Wilson case, the hopping term comes with a plus sign.
  // However, in boundary(), the minus sign for the Wilson case is implicitly included.
  // We therefore use -1.0 here.
	boundary(-1.0);

	status = check_geometry();
	if (status != 0) {
		fprintf(stderr, "Checking of geometry failed. Unable to proceed.\nAborting....\n");
		exit(1);
	}
#if (defined MPI && !(defined _USE_SHMEM))
	// fails, we're not using spinor fields
//	check_xchange();
#endif

	start_ranlux(1, 123456);

	// read gauge field
	if( strcmp(gauge_input_filename, "create_random_gaugefield") == 0 ) {
		random_gauge_field(reproduce_randomnumber_flag, g_gauge_field);
	}
	else {
		sprintf(conf_filename, "%s.%.4d", gauge_input_filename, nstore);
		if (g_cart_id == 0) {
		  printf("#\n# Trying to read gauge field from file %s in %s precision.\n",
				conf_filename, (gauge_precision_read_flag == 32 ? "single" : "double"));
		  fflush(stdout);
		}

		int i;
		if( (i = read_gauge_field(conf_filename,g_gauge_field)) !=0) {
		  fprintf(stderr, "Error %d while reading gauge field from %s\n Aborting...\n", i, conf_filename);
		  exit(-2);
		}

		if (g_cart_id == 0) {
			printf("# Finished reading gauge field.\n");
			fflush(stdout);
		}
	}

	// read scalar field
	if( strcmp(scalar_input_filename, "create_random_scalarfield") == 0 ) {
		for( int s=0; s<numbScalarFields; s++ )
			ranlxd(g_scalar_field[s], VOLUME);
	}
	else {
		sprintf(scalar_filename, "%s.%d", scalar_input_filename, nscalar);
		if (g_cart_id == 0) {
		  printf("#\n# Trying to read scalar field from file %s in %s precision.\n",
				scalar_filename, (scalar_precision_read_flag == 32 ? "single" : "double"));
		  fflush(stdout);
		}

		int i;
		if( (i = read_scalar_field(scalar_filename,g_scalar_field)) !=0) {
		  fprintf(stderr, "Error %d while reading scalar field from %s\n Aborting...\n", i, scalar_filename);
		  exit(-2);
		}

		if (g_cart_id == 0) {
			printf("# Finished reading scalar field.\n");
			fflush(stdout);
		}
	}

#ifdef MPI
    xchange_gauge(g_gauge_field);
#endif

    /*compute the energy of the gauge field*/
    plaquette_energy = measure_plaquette( (const su3**) g_gauge_field);

    if (g_cart_id == 0) {
      printf("# The computed plaquette value is %e.\n", plaquette_energy / (6.*VOLUME*g_nproc));
      fflush(stdout);
    }

#ifdef MPI
	for( int s=0; s<numbScalarFields; s++ )
		generic_exchange(g_scalar_field[s], sizeof(scalar));
#endif

	/*initialize the bispinor fields*/
	j_max=1;
	sdt=0.;
  // w
	random_spinor_field_lexic( (spinor*)(g_bispinor_field[4]), reproduce_randomnumber_flag, RN_GAUSS);
	random_spinor_field_lexic( (spinor*)(g_bispinor_field[4])+VOLUME, reproduce_randomnumber_flag, RN_GAUSS);
	// for the D^\dagger test:
  // v
	random_spinor_field_lexic( (spinor*)(g_bispinor_field[5]), reproduce_randomnumber_flag, RN_GAUSS);
	random_spinor_field_lexic( (spinor*)(g_bispinor_field[5])+VOLUME, reproduce_randomnumber_flag, RN_GAUSS);
#if defined MPI
	generic_exchange(g_bispinor_field[4], sizeof(bispinor));
#endif

	// print L2-norm of source:
	double squarenorm = square_norm((spinor*)g_bispinor_field[4], 2*VOLUME, 1);
	if(g_proc_id==0) {
		printf("\n# square norm of the source: ||w||^2 = %e\n\n", squarenorm);
		fflush(stdout);
	}

  double t_MG, t_BK;
	/* inversion needs to be done first because it uses loads of the g_bispinor_fields internally */
#if TEST_INVERSION
  if(g_proc_id==1)
    printf("Testing inversion\n");
  // Bartek's operator
  t1 = gettime();
	cg_her_bi(g_bispinor_field[9], g_bispinor_field[4],
           25000, 1.0e-14, 0, VOLUME, &Q2_psi_BSM2b);
  t_BK = gettime() - t1;

  // Marco's operator
  t1 = gettime();
	cg_her_bi(g_bispinor_field[8], g_bispinor_field[4],
           25000, 1.0e-14, 0, VOLUME, &Q2_psi_BSM2m);
  t_MG = gettime() - t1;
  
  if(g_proc_id==0)
    printf("Operator inversion time: t_MG = %f sec \t t_BK = %f sec\n\n", t_MG, t_BK); 
#endif

  /* now apply the operators to the same bispinor field and do various comparisons */

  // Marco's operator
#ifdef MPI
  MPI_Barrier(MPI_COMM_WORLD);
#endif
  t_MG = 0.0;
  t1 = gettime();
  D_psi_BSM2m(g_bispinor_field[0], g_bispinor_field[4]);
  t1 = gettime() - t1;
#ifdef MPI
	MPI_Allreduce (&t1, &t_MG, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#else
  t_MG = t1;
#endif

  // Bartek's operator
#ifdef MPI
  MPI_Barrier(MPI_COMM_WORLD);
#endif
  t_BK = 0.0;
  t1 = gettime();
  D_psi_BSM2b(g_bispinor_field[1], g_bispinor_field[4]);
  t1 = gettime() - t1;
#ifdef MPI
	MPI_Allreduce (&t1, &t_BK, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#else
  t_BK = t1;
#endif
  
  if(g_proc_id==0)
    printf("Operator application time: t_MG = %f sec \t t_BK = %f sec\n\n", t_MG, t_BK); 

	squarenorm = square_norm((spinor*)g_bispinor_field[0], 2*VOLUME, 1);
	if(g_proc_id==0) {
		printf("# || D_MG w ||^2 = %.16e\n", squarenorm);
		fflush(stdout);
	}
	squarenorm = square_norm((spinor*)g_bispinor_field[1], 2*VOLUME, 1);
	if(g_proc_id==0) {
		printf("# || D_BK w ||^2 = %.16e\n\n\n", squarenorm);
		fflush(stdout);
	}

  diff( (spinor*)g_bispinor_field[3], (spinor*)g_bispinor_field[0], (spinor*)g_bispinor_field[1], 2*VOLUME);

  printf("element-wise difference between (D_BK w) and (D_MG w)\n");
  printf("( D_MG w - M_BK w )->sp_up.s0.c0= %.16e + I*(%.16e)\n\n", creal(g_bispinor_field[3][0].sp_up.s0.c0), cimag(g_bispinor_field[3][0].sp_up.s0.c0) );

  double diffnorm = square_norm( (spinor*) g_bispinor_field[3], 2*VOLUME, 1 );
  if(g_proc_id==0){
    printf("Square norm of the difference\n");
    printf("|| D_MG w - D_BK w ||^2     = %.16e \n\n\n", diffnorm); 
  }

	// < D w, v >
  printf("Check consistency of D and D^dagger\n");
  _Complex double prod1_MG = scalar_prod( (spinor*)g_bispinor_field[0], (spinor*)g_bispinor_field[5], 2*VOLUME, 1 );
	if(g_proc_id==0)
    printf("< D_MG w, v >        = %.16e + I*(%.16e)\n", creal(prod1_MG), cimag(prod1_MG));
	
  _Complex double prod1_BK = scalar_prod( (spinor*)g_bispinor_field[1], (spinor*)g_bispinor_field[5], 2*VOLUME, 1 );
  if(g_proc_id==0)
  	printf("< D_BK w, v >        = %.16e + I*(%.16e)\n\n", creal(prod1_BK), cimag(prod1_BK));
	
  // < w, D^\dagger v >
  t_MG = gettime();
	D_psi_dagger_BSM2m(g_bispinor_field[6], g_bispinor_field[5]);
  t_MG = gettime()-t_MG;

  t_BK = gettime();
	D_psi_dagger_BSM2b(g_bispinor_field[7], g_bispinor_field[5]);
  t_BK = gettime() - t_BK;

  if(g_proc_id==0)
    printf("Operator dagger application time: t_MG = %f sec \t t_BK = %f sec\n\n", t_MG, t_BK); 

	_Complex double prod2_MG = scalar_prod((spinor*)g_bispinor_field[4], (spinor*)g_bispinor_field[6], 2*VOLUME, 1);
	_Complex double prod2_BK = scalar_prod((spinor*)g_bispinor_field[4], (spinor*)g_bispinor_field[7], 2*VOLUME, 1);
  if( g_proc_id == 0 ){
	  printf("< w, D_MG^dagger v > = %.16e + I*(%.16e)\n", creal(prod2_MG), cimag(prod2_MG));
    printf("< w, D_BK^dagger v > = %.16e + I*(%.16e)\n", creal(prod2_BK), cimag(prod2_BK));
	  
    printf("\n| < D_MG w, v > - < w, D_MG^dagger v > | = %.16e\n",cabs(prod2_MG-prod1_MG));
	  printf("| < D_BK w, v > - < w, D_BK^dagger v > | = %.16e\n\n",cabs(prod2_BK-prod1_BK));
  }
	
#if TEST_INVERSION
	// check result of inversion
	Q2_psi_BSM2m(g_bispinor_field[10], g_bispinor_field[8]);
	Q2_psi_BSM2b(g_bispinor_field[11], g_bispinor_field[8]);
	assign_diff_mul((spinor*)g_bispinor_field[10], (spinor*)g_bispinor_field[4], 1.0, 2*VOLUME);
	assign_diff_mul((spinor*)g_bispinor_field[11], (spinor*)g_bispinor_field[4], 1.0, 2*VOLUME);
	double squarenorm_MGMG = square_norm((spinor*)g_bispinor_field[10], 2*VOLUME, 1);
	double squarenorm_BKMG = square_norm((spinor*)g_bispinor_field[11], 2*VOLUME, 1);
	if(g_proc_id==0) {
		printf("# ||Q2_MG*(Q2_MG)^-1*(b)-b||^2 = %.16e\n\n", squarenorm_MGMG);
		printf("# ||Q2_BK*(Q2_MG)^-1*(b)-b||^2 = %.16e\n\n", squarenorm_BKMG);
		fflush(stdout);
	}
	
  Q2_psi_BSM2b(g_bispinor_field[10], g_bispinor_field[9]);
  Q2_psi_BSM2m(g_bispinor_field[11], g_bispinor_field[9]);
	assign_diff_mul((spinor*)g_bispinor_field[10], (spinor*)g_bispinor_field[4], 1.0, 2*VOLUME);
	assign_diff_mul((spinor*)g_bispinor_field[11], (spinor*)g_bispinor_field[4], 1.0, 2*VOLUME);
	double squarenorm_BKBK = square_norm((spinor*)g_bispinor_field[10], 2*VOLUME, 1);
	double squarenorm_MGBK = square_norm((spinor*)g_bispinor_field[11], 2*VOLUME, 1);
	if(g_proc_id==0) {
		printf("# ||Q2_BK*(Q2_BK)^-1*(b)-b||^2 = %.16e\n\n", squarenorm_BKBK);
		printf("# ||Q2_MG*(Q2_BK)^-1*(b)-b||^2 = %.16e\n\n", squarenorm_MGBK);
		fflush(stdout);
	}
#endif

#ifdef OMP
	free_omp_accumulators();
#endif
	free_gauge_field();
	free_geometry_indices();
	free_bispinor_field();
	free_scalar_field();
#ifdef MPI
	MPI_Barrier(MPI_COMM_WORLD);
	MPI_Finalize();
#endif
	return(0);
}
Example #5
0
int main(int argc,char *argv[]) {

  FILE *parameterfile=NULL, *countfile=NULL;
  char *filename = NULL;
  char datafilename[206];
  char parameterfilename[206];
  char gauge_filename[50];
  char nstore_filename[50];
  char tmp_filename[50];
  char *input_filename = NULL;
  int status = 0, accept = 0;
  int j,ix,mu, trajectory_counter=0;
  unsigned int const io_max_attempts = 5; /* Make this configurable? */
  unsigned int const io_timeout = 5; /* Make this configurable? */
  struct timeval t1;

  /* Energy corresponding to the Gauge part */
  double plaquette_energy = 0., rectangle_energy = 0.;
  /* Acceptance rate */
  int Rate=0;
  /* Do we want to perform reversibility checks */
  /* See also return_check_flag in read_input.h */
  int return_check = 0;
  /* For getopt */
  int c;

  paramsXlfInfo *xlfInfo;

/* For online measurements */
  measurement * meas;
  int imeas;
  
#ifdef _KOJAK_INST
#pragma pomp inst init
#pragma pomp inst begin(main)
#endif

#if (defined SSE || defined SSE2 || SSE3)
  signal(SIGILL,&catch_ill_inst);
#endif

  strcpy(gauge_filename,"conf.save");
  strcpy(nstore_filename,".nstore_counter");
  strcpy(tmp_filename, ".conf.tmp");

  verbose = 1;
  g_use_clover_flag = 0;

#ifdef MPI

#  ifdef OMP
  int mpi_thread_provided;
  MPI_Init_thread(&argc, &argv, MPI_THREAD_SERIALIZED, &mpi_thread_provided);
#  else
  MPI_Init(&argc, &argv);
#  endif

  MPI_Comm_rank(MPI_COMM_WORLD, &g_proc_id);
#else
  g_proc_id = 0;
#endif

  process_args(argc,argv,&input_filename,&filename);
  set_default_filenames(&input_filename,&filename);

  /* Read the input file */
  if( (status = read_input(input_filename)) != 0) {
    fprintf(stderr, "Could not find input file: %s\nAborting...\n", input_filename);
    exit(-1);
  }

#ifdef OMP
  init_openmp();
#endif

  DUM_DERI = 4;
  DUM_SOLVER = DUM_DERI+1;
  DUM_MATRIX = DUM_SOLVER+6;
  if(g_running_phmc) {
    NO_OF_SPINORFIELDS = DUM_MATRIX+8;
  }
  else {
    NO_OF_SPINORFIELDS = DUM_MATRIX+6;
  }
  DUM_BI_DERI = 6;
  DUM_BI_SOLVER = DUM_BI_DERI+7;

  DUM_BI_MATRIX = DUM_BI_SOLVER+6;
  NO_OF_BISPINORFIELDS = DUM_BI_MATRIX+6;

  tmlqcd_mpi_init(argc, argv);

  if(nstore == -1) {
    countfile = fopen(nstore_filename, "r");
    if(countfile != NULL) {
      j = fscanf(countfile, "%d %d %s\n", &nstore, &trajectory_counter, gauge_input_filename);
      if(j < 1) nstore = 0;
      if(j < 2) trajectory_counter = 0;
      fclose(countfile);
    }
    else {
      nstore = 0;
      trajectory_counter = 0;
    }
  }
  
#ifndef MPI
  g_dbw2rand = 0;
#endif
  
  
  g_mu = g_mu1;
  
#ifdef _GAUGE_COPY
  status = init_gauge_field(VOLUMEPLUSRAND + g_dbw2rand, 1);
#else
  status = init_gauge_field(VOLUMEPLUSRAND + g_dbw2rand, 0);
#endif
  if (status != 0) {
    fprintf(stderr, "Not enough memory for gauge_fields! Aborting...\n");
    exit(0);
  }
  j = init_geometry_indices(VOLUMEPLUSRAND + g_dbw2rand);
  if (j != 0) {
    fprintf(stderr, "Not enough memory for geometry_indices! Aborting...\n");
    exit(0);
  }
  if(even_odd_flag) {
    j = init_spinor_field(VOLUMEPLUSRAND/2, NO_OF_SPINORFIELDS);
  }
  else {
    j = init_spinor_field(VOLUMEPLUSRAND, NO_OF_SPINORFIELDS);
  }
  if (j != 0) {
    fprintf(stderr, "Not enough memory for spinor fields! Aborting...\n");
    exit(0);
  }
  if(even_odd_flag) {
    j = init_csg_field(VOLUMEPLUSRAND/2);
  }
  else {
    j = init_csg_field(VOLUMEPLUSRAND);
  }
  if (j != 0) {
    fprintf(stderr, "Not enough memory for csg fields! Aborting...\n");
    exit(0);
  }
  j = init_moment_field(VOLUME, VOLUMEPLUSRAND + g_dbw2rand);
  if (j != 0) {
    fprintf(stderr, "Not enough memory for moment fields! Aborting...\n");
    exit(0);
  }

  if(g_running_phmc) {
    j = init_bispinor_field(VOLUME/2, NO_OF_BISPINORFIELDS);
    if (j!= 0) {
      fprintf(stderr, "Not enough memory for bi-spinor fields! Aborting...\n");
      exit(0);
    }
  }

  /* list and initialize measurements*/
  if(g_proc_id == 0) {
    printf("\n");
    for(j = 0; j < no_measurements; j++) {
      printf("# measurement id %d, type = %d: Frequency %d\n", j, measurement_list[j].type, measurement_list[j].freq);
    }
  }
  init_measurements();

  /*construct the filenames for the observables and the parameters*/
  strncpy(datafilename,filename,200);  
  strcat(datafilename,".data");
  strncpy(parameterfilename,filename,200);  
  strcat(parameterfilename,".para");

  if(g_proc_id == 0){
    parameterfile = fopen(parameterfilename, "a");
    write_first_messages(parameterfile, "hmc", git_hash);
  }

  /* define the geometry */
  geometry();

  /* define the boundary conditions for the fermion fields */
  boundary(g_kappa);

  status = check_geometry();

  if (status != 0) {
    fprintf(stderr, "Checking of geometry failed. Unable to proceed.\nAborting....\n");
    exit(1);
  }


#ifdef _USE_HALFSPINOR
  j = init_dirac_halfspinor();
  if (j!= 0) {
    fprintf(stderr, "Not enough memory for halffield! Aborting...\n");
    exit(-1);
  }
  if(g_sloppy_precision_flag == 1) {
    init_dirac_halfspinor32();
  }
#  if (defined _PERSISTENT)
  init_xchange_halffield();
#  endif
#endif

  /* Initialise random number generator */
  start_ranlux(rlxd_level, random_seed^trajectory_counter);

  /* Set up the gauge field */
  /* continue and restart */
  if(startoption==3 || startoption == 2) {
    if(g_proc_id == 0) {
      printf("# Trying to read gauge field from file %s in %s precision.\n",
            gauge_input_filename, (gauge_precision_read_flag == 32 ? "single" : "double"));
      fflush(stdout);
    }
    if( (status = read_gauge_field(gauge_input_filename)) != 0) {
      fprintf(stderr, "Error %d while reading gauge field from %s\nAborting...\n", status, gauge_input_filename);
      exit(-2);
    }

    if (g_proc_id == 0){
      printf("# Finished reading gauge field.\n");
      fflush(stdout);
    }
  }
  else if (startoption == 1) {
    /* hot */
    random_gauge_field(reproduce_randomnumber_flag, g_gauge_field);
  }
  else if(startoption == 0) {
    /* cold */
    unit_g_gauge_field();
  }

  /*For parallelization: exchange the gaugefield */
#ifdef MPI
  xchange_gauge(g_gauge_field);
#endif

  if(even_odd_flag) {
    j = init_monomials(VOLUMEPLUSRAND/2, even_odd_flag);
  }
  else {
    j = init_monomials(VOLUMEPLUSRAND, even_odd_flag);
  }
  if (j != 0) {
    fprintf(stderr, "Not enough memory for monomial pseudo fermion fields! Aborting...\n");
    exit(0);
  }

  init_integrator();

  if(g_proc_id == 0) {
    for(j = 0; j < no_monomials; j++) {
      printf("# monomial id %d type = %d timescale %d\n", j, monomial_list[j].type, monomial_list[j].timescale);
    }
  }

  plaquette_energy = measure_gauge_action( (const su3**) g_gauge_field);
  if(g_rgi_C1 > 0. || g_rgi_C1 < 0.) {
    rectangle_energy = measure_rectangles( (const su3**) g_gauge_field);
    if(g_proc_id == 0){
      fprintf(parameterfile,"# Computed rectangle value: %14.12f.\n",rectangle_energy/(12.*VOLUME*g_nproc));
    }
  }
  //eneg = g_rgi_C0 * plaquette_energy + g_rgi_C1 * rectangle_energy;

  if(g_proc_id == 0) {
    fprintf(parameterfile,"# Computed plaquette value: %14.12f.\n", plaquette_energy/(6.*VOLUME*g_nproc));
    printf("# Computed plaquette value: %14.12f.\n", plaquette_energy/(6.*VOLUME*g_nproc));
    fclose(parameterfile);
  }

  /* set ddummy to zero */
  for(ix = 0; ix < VOLUMEPLUSRAND; ix++){
    for(mu=0; mu<4; mu++){
      ddummy[ix][mu].d1=0.;
      ddummy[ix][mu].d2=0.;
      ddummy[ix][mu].d3=0.;
      ddummy[ix][mu].d4=0.;
      ddummy[ix][mu].d5=0.;
      ddummy[ix][mu].d6=0.;
      ddummy[ix][mu].d7=0.;
      ddummy[ix][mu].d8=0.;
    }
  }

  if(g_proc_id == 0) {
    gettimeofday(&t1,NULL);
    countfile = fopen("history_hmc_tm", "a");
    fprintf(countfile, "!!! Timestamp %ld, Nsave = %d, g_mu = %e, g_mu1 = %e, g_mu_2 = %e, g_mu3 = %e, beta = %f, kappa = %f, C1 = %f, ",
            t1.tv_sec, Nsave, g_mu, g_mu1, g_mu2, g_mu3, g_beta, g_kappa, g_rgi_C1);
    for(j = 0; j < Integrator.no_timescales; j++) {
      fprintf(countfile, "n_int[%d] = %d ", j, Integrator.no_mnls_per_ts[j]);
    }
    fprintf(countfile, "\n");
    fclose(countfile);
  }


  /* Loop for measurements */
  for(j = 0; j < Nmeas; j++) {
    if(g_proc_id == 0) {
      printf("#\n# Starting trajectory no %d\n", trajectory_counter);
    }

    return_check = return_check_flag && (trajectory_counter%return_check_interval == 0);

    accept = update_tm(&plaquette_energy, &rectangle_energy, datafilename, 
		       return_check, Ntherm<trajectory_counter, trajectory_counter);
    Rate += accept;

    /* Save gauge configuration all Nsave times */
    if((Nsave !=0) && (trajectory_counter%Nsave == 0) && (trajectory_counter!=0)) {
      sprintf(gauge_filename,"conf.%.4d", nstore);
      if(g_proc_id == 0) {
        countfile = fopen("history_hmc_tm", "a");
        fprintf(countfile, "%.4d, measurement %d of %d, Nsave = %d, Plaquette = %e, trajectory nr = %d\n",
            nstore, j, Nmeas, Nsave, plaquette_energy/(6.*VOLUME*g_nproc),
            trajectory_counter);
        fclose(countfile);
      }
      nstore ++;
    }
    else {
      sprintf(gauge_filename,"conf.save");
    }
    if(((Nsave !=0) && (trajectory_counter%Nsave == 0) && (trajectory_counter!=0)) || (write_cp_flag == 1) || (j >= (Nmeas - 1))) {
      /* If a reversibility check was performed this trajectory, and the trajectory was accepted,
       * then the configuration is currently stored in .conf.tmp, written out by update_tm.
       * In that case also a readback was performed, so no need to test .conf.tmp
       * In all other cases the gauge configuration still needs to be written out here. */
      if (!(return_check && accept))
        for (unsigned int attempt = 1; attempt <= io_max_attempts; ++attempt)
        {
          if (g_proc_id == 0)
            fprintf(stdout, "# Writing gauge field to %s.\n", tmp_filename);

          xlfInfo = construct_paramsXlfInfo(plaquette_energy/(6.*VOLUME*g_nproc), trajectory_counter);
          status = write_gauge_field( tmp_filename, gauge_precision_write_flag, xlfInfo);
          free(xlfInfo);
          
          if (status) {
            /* Writing the gauge field failed directly */
            fprintf(stderr, "Error %d while writing gauge field to %s\nAborting...\n", status, tmp_filename);
            exit(-2);
          }
          
          if (g_disable_IO_checks) {
            if (g_proc_id == 0)
              fprintf(stdout, "# Write completed successfully. Write not verified!\n");
            break;
          }

          /* Read gauge field back to verify the writeout */
          if (g_proc_id == 0) 
            fprintf(stdout, "# Write completed, verifying write...\n");

          status = read_gauge_field(tmp_filename);
          
          if (!status) {
            if (g_proc_id == 0)
              fprintf(stdout, "# Write successfully verified.\n");
            break;
          }

          if (g_proc_id == 0) {
            fprintf(stdout, "# Writeout of %s returned no error, but verification discovered errors.\n", tmp_filename);
            fprintf(stdout, "# Potential disk or MPI I/O error.\n");
            fprintf(stdout, "# This was attempt %d out of %d.\n", attempt, io_max_attempts);
          }

          if (attempt == io_max_attempts)
            kill_with_error(NULL, g_proc_id, "Persistent I/O failures!\n");

          if (g_proc_id == 0)
            fprintf(stdout, "# Will attempt to write again in %d seconds.\n", io_timeout);
          
          sleep(io_timeout);
#ifdef MPI
          MPI_Barrier(MPI_COMM_WORLD);
#endif
        }
      /* Now move .conf.tmp into place */
      if(g_proc_id == 0) {
        fprintf(stdout, "# Renaming %s to %s.\n", tmp_filename, gauge_filename);
        if (rename(tmp_filename, gauge_filename) != 0) {
          /* Errno can be inspected here for more descriptive error reporting */
          fprintf(stderr, "Error while trying to rename temporary file %s to %s. Unable to proceed.\n", tmp_filename, gauge_filename);
          exit(-2);
        }
        countfile = fopen(nstore_filename, "w");
        fprintf(countfile, "%d %d %s\n", nstore, trajectory_counter+1, gauge_filename);
        fclose(countfile);
      }
    }

    /* online measurements */
    for(imeas = 0; imeas < no_measurements; imeas++){
      meas = &measurement_list[imeas];
      if(trajectory_counter%meas->freq == 0){
        if (g_proc_id == 0) {
          fprintf(stdout, "#\n# Beginning online measurement.\n");
        }
        meas->measurefunc(trajectory_counter, imeas, even_odd_flag);
      }
    }

    if(g_proc_id == 0) {
      verbose = 1;
    }
    ix = reread_input("hmc.reread");
    if(g_proc_id == 0) {
      verbose = 0;
    }

#ifdef MPI
    MPI_Barrier(MPI_COMM_WORLD);
#endif
    if(ix == 0 && g_proc_id == 0) {
      countfile = fopen("history_hmc_tm", "a");
      fprintf(countfile, "# Changed input parameters according to hmc.reread: measurement %d of %d\n", j, Nmeas);
      fclose(countfile);
      printf("# Changed input parameters according to hmc.reread (see stdout): measurement %d of %d\n", j, Nmeas);
      remove("hmc.reread");
    }
    trajectory_counter++;
  } /* end of loop over trajectories */

  if(g_proc_id == 0 && Nmeas != 0) {
    printf("# Acceptance rate was %3.2f percent, %d out of %d trajectories accepted.\n", 100.*(double)Rate/(double)Nmeas, Rate, Nmeas);
    fflush(stdout);
    parameterfile = fopen(parameterfilename, "a");
    fprintf(parameterfile, "# Acceptance rate was %3.2f percent, %d out of %d trajectories accepted.\n", 100.*(double)Rate/(double)Nmeas, Rate, Nmeas);
    fclose(parameterfile);
  }

#ifdef MPI
  MPI_Finalize();
#endif
#ifdef OMP
  free_omp_accumulators();
#endif
  free_gauge_tmp();
  free_gauge_field();
  free_geometry_indices();
  free_spinor_field();
  free_moment_field();
  free_monomials();
  if(g_running_phmc) {
    free_bispinor_field();
    free_chi_spinor_field();
  }
  free(input_filename);
  free(filename);
  return(0);
#ifdef _KOJAK_INST
#pragma pomp inst end(main)
#endif
}
int tmLQCD_invert_init(int argc, char *argv[], const int _verbose) {

  DUM_DERI = 8;
  DUM_MATRIX = DUM_DERI + 5;
  NO_OF_SPINORFIELDS = DUM_MATRIX + 3;

  // in read_input.h
  verbose = _verbose;
  g_use_clover_flag = 0;

#ifdef MPI
  MPI_Comm_rank(MPI_COMM_WORLD, &g_proc_id);
#else
  g_proc_id = 0;
#endif

  /* Read the input file */
  if( (read_input("invert.input")) != 0) {
    fprintf(stderr, "tmLQCD_init_invert: Could not find input file: invert.input\nAborting...");
  }

#ifdef OMP
  init_openmp();
#endif

  tmlqcd_mpi_init(argc, argv);
  g_dbw2rand = 0;
  for(int j = 0; j < no_operators; j++) if(!operator_list[j].even_odd_flag) even_odd_flag = 0;

#ifdef _GAUGE_COPY
  int j = init_gauge_field(VOLUMEPLUSRAND, 1);
#else
  int j = init_gauge_field(VOLUMEPLUSRAND, 0);
#endif
  if (j != 0) {
    fprintf(stderr, "tmLQCD_init_invert: Not enough memory for gauge_fields! Aborting...\n");
    return(-1);
  }
  j = init_geometry_indices(VOLUMEPLUSRAND);
  if (j != 0) {
    fprintf(stderr, "tmLQCD_init_invert: Not enough memory for geometry indices! Aborting...\n");
    return(-1);
  }
  if (even_odd_flag) {
    j = init_spinor_field(VOLUMEPLUSRAND / 2, NO_OF_SPINORFIELDS);
  }
  else {
    j = init_spinor_field(VOLUMEPLUSRAND, NO_OF_SPINORFIELDS);
  }
  if (j != 0) {
    fprintf(stderr, "tmLQCD_init_invert: Not enough memory for spinor fields! Aborting...\n");
    return(-1);
  }
  // define the geometry
  geometry();

  // initialise the operators
  init_operators();
  
#ifdef HAVE_GPU
  if(usegpu_flag){
    if(even_odd_flag){
      init_mixedsolve_eo(g_gauge_field);
    }
    else{
      init_mixedsolve(g_gauge_field);
    }
#  ifdef GPU_DOUBLE
    /*init double fields w/o momenta*/
    init_gpu_fields(0);
#  endif
#  ifdef TEMPORALGAUGE
    int retval;
    if((retval=init_temporalgauge(VOLUME, g_gauge_field)) !=0){
      if(g_proc_id == 0) printf("tmLQCD_init_invert: Error while initializing temporal gauge. Aborting...\n");   
      exit(200);
    }
#  endif
  }//usegpu_flag
#endif  


#ifdef _USE_HALFSPINOR
  j = init_dirac_halfspinor();
  if (j != 0) {
    fprintf(stderr, "tmLQCD_init_invert: Not enough memory for halffield! Aborting...\n");
    return(-1);
  }
  if (g_sloppy_precision_flag == 1) {
    j = init_dirac_halfspinor32();
    if (j != 0) {
      fprintf(stderr, "tmLQCD_init_invert: Not enough memory for 32-bit halffield! Aborting...\n");
      return(-1);
    }
  }
#  if (defined _PERSISTENT)
  if (even_odd_flag)
    init_xchange_halffield();
#  endif
#endif
  tmLQCD_invert_initialised = 1;  
  return(0);
}
Example #7
0
int main(int argc,char *argv[])
{
  int j,j_max,k,k_max = 1;
#ifdef HAVE_LIBLEMON
  paramsXlfInfo *xlfInfo;
#endif
  int status = 0;
  
  static double t1,t2,dt,sdt,dts,qdt,sqdt;
  double antioptaway=0.0;

#ifdef TM_USE_MPI
  static double dt2;
  
  DUM_DERI = 6;
  DUM_MATRIX = DUM_DERI+8;
  NO_OF_SPINORFIELDS = DUM_MATRIX+2;

#  ifdef TM_USE_OMP
  int mpi_thread_provided;
  MPI_Init_thread(&argc, &argv, MPI_THREAD_SERIALIZED, &mpi_thread_provided);
#  else
  MPI_Init(&argc, &argv);
#  endif
  MPI_Comm_rank(MPI_COMM_WORLD, &g_proc_id);

#else
  g_proc_id = 0;
#endif

  g_rgi_C1 = 1.; 

    /* Read the input file */
  if((status = read_input("benchmark.input")) != 0) {
    fprintf(stderr, "Could not find input file: benchmark.input\nAborting...\n");
    exit(-1);
  }

#ifdef TM_USE_OMP
  init_openmp();
#endif

  tmlqcd_mpi_init(argc, argv);


  
  if(g_proc_id==0) {
#ifdef SSE
    printf("# The code was compiled with SSE instructions\n");
#endif
#ifdef SSE2
    printf("# The code was compiled with SSE2 instructions\n");
#endif
#ifdef SSE3
    printf("# The code was compiled with SSE3 instructions\n");
#endif
#ifdef P4
    printf("# The code was compiled for Pentium4\n");
#endif
#ifdef OPTERON
    printf("# The code was compiled for AMD Opteron\n");
#endif
#ifdef _GAUGE_COPY
    printf("# The code was compiled with -D_GAUGE_COPY\n");
#endif
#ifdef BGL
    printf("# The code was compiled for Blue Gene/L\n");
#endif
#ifdef BGP
    printf("# The code was compiled for Blue Gene/P\n");
#endif
#ifdef _USE_HALFSPINOR
    printf("# The code was compiled with -D_USE_HALFSPINOR\n");
#endif    
#ifdef _USE_SHMEM
    printf("# The code was compiled with -D_USE_SHMEM\n");
#  ifdef _PERSISTENT
    printf("# The code was compiled for persistent MPI calls (halfspinor only)\n");
#  endif
#endif
#ifdef TM_USE_MPI
#  ifdef _NON_BLOCKING
    printf("# The code was compiled for non-blocking MPI calls (spinor and gauge)\n");
#  endif
#endif
    printf("\n");
    fflush(stdout);
  }
  
  
#ifdef _GAUGE_COPY
  init_gauge_field(VOLUMEPLUSRAND + g_dbw2rand, 1);
#else
  init_gauge_field(VOLUMEPLUSRAND + g_dbw2rand, 0);
#endif
  init_geometry_indices(VOLUMEPLUSRAND + g_dbw2rand);

  if(even_odd_flag) {
    j = init_spinor_field(VOLUMEPLUSRAND/2, 2*k_max+1);
  }
  else {
    j = init_spinor_field(VOLUMEPLUSRAND, 2*k_max);
  }

  if ( j!= 0) {
    fprintf(stderr, "Not enough memory for spinor fields! Aborting...\n");
    exit(0);
  }
  j = init_moment_field(VOLUME, VOLUMEPLUSRAND + g_dbw2rand);
  if ( j!= 0) {
    fprintf(stderr, "Not enough memory for moment fields! Aborting...\n");
    exit(0);
  }
  
  if(g_proc_id == 0) {
    fprintf(stdout,"# The number of processes is %d \n",g_nproc);
    printf("# The lattice size is %d x %d x %d x %d\n",
	   (int)(T*g_nproc_t), (int)(LX*g_nproc_x), (int)(LY*g_nproc_y), (int)(g_nproc_z*LZ));
    printf("# The local lattice size is %d x %d x %d x %d\n", 
	   (int)(T), (int)(LX), (int)(LY),(int) LZ);
    if(even_odd_flag) {
      printf("# benchmarking the even/odd preconditioned Dirac operator\n");
    }
    else {
      printf("# benchmarking the standard Dirac operator\n");
    }
    fflush(stdout);
  }
  
  /* define the geometry */
  geometry();
  /* define the boundary conditions for the fermion fields */
  boundary(g_kappa);

#ifdef _USE_HALFSPINOR
  j = init_dirac_halfspinor();
  if ( j!= 0) {
    fprintf(stderr, "Not enough memory for halfspinor fields! Aborting...\n");
    exit(0);
  }
  if(g_sloppy_precision_flag == 1) {
    g_sloppy_precision = 1;
    j = init_dirac_halfspinor32();
    if ( j!= 0) {
      fprintf(stderr, "Not enough memory for 32-Bit halfspinor fields! Aborting...\n");
      exit(0);
    }
  }
#  if (defined _PERSISTENT)
  init_xchange_halffield();
#  endif
#endif  

  status = check_geometry();
  if (status != 0) {
    fprintf(stderr, "Checking of geometry failed. Unable to proceed.\nAborting....\n");
    exit(1);
  }
#if (defined TM_USE_MPI && !(defined _USE_SHMEM))
  check_xchange(); 
#endif

  start_ranlux(1, 123456);
  random_gauge_field(reproduce_randomnumber_flag, g_gauge_field);

#ifdef TM_USE_MPI
  /*For parallelization: exchange the gaugefield */
  xchange_gauge(g_gauge_field);
#endif

  if(even_odd_flag) {
    sdt=0.; sqdt=0.0;
    /*initialize the pseudo-fermion fields*/
    for (k = 0; k < k_max; k++) {
      random_spinor_field_eo(g_spinor_field[k], reproduce_randomnumber_flag, RN_GAUSS);
    }
    
    j_max=512;
    antioptaway=0.0;
    /* compute approximately how many applications we need to do to get a reliable measurement */
#ifdef TM_USE_MPI
    MPI_Barrier(MPI_COMM_WORLD);
#endif
    t1 = gettime();
    for (j=0;j<j_max;j++) {
      for (k=0;k<k_max;k++) {
        Hopping_Matrix(0, g_spinor_field[k+k_max], g_spinor_field[k]);
        Hopping_Matrix(1, g_spinor_field[2*k_max], g_spinor_field[k+k_max]);
        antioptaway+=creal(g_spinor_field[2*k_max][0].s0.c0);
      }
    }
    dt = gettime()-t1;
    // division by g_nproc because we will average over processes
    j = (int)(ceil(j_max*31.0/dt/g_nproc));
#ifdef TM_USE_MPI
    MPI_Allreduce(&j,&j_max, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
#else
    j_max = j;
#endif



    /* perform the actual benchmark */
#ifdef TM_USE_MPI
    MPI_Barrier(MPI_COMM_WORLD);
#endif
    t1 = gettime();
    antioptaway=0.0;
    for (j=0;j<j_max;j++) {
      for (k=0;k<k_max;k++) {
        Hopping_Matrix(0, g_spinor_field[k+k_max], g_spinor_field[k]);
        Hopping_Matrix(1, g_spinor_field[2*k_max], g_spinor_field[k+k_max]);
        antioptaway+=creal(g_spinor_field[2*k_max][0].s0.c0);
      }
    }
    dt = gettime()-t1;
#ifdef TM_USE_MPI
    MPI_Allreduce (&dt, &sdt, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#else
    sdt = dt;
#endif
    
    qdt=dt*dt;
#ifdef TM_USE_MPI
    MPI_Allreduce (&qdt, &sqdt, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#else
    sqdt = qdt;
#endif

    sdt=sdt/((double)g_nproc);
    sqdt=sqrt(sqdt/g_nproc-sdt*sdt);
     
    dts=dt;
    sdt=1.0e6f*sdt/((double)(k_max*j_max*(VOLUME)));
    sqdt=1.0e6f*sqdt/((double)(k_max*j_max*(VOLUME)));
    
    if(g_proc_id==0) {
      printf("# The following result is just to make sure that the calculation is not optimized away: %e\n", antioptaway);
      printf("# Total compute time %e sec, variance of the time %e sec. (%d iterations).\n", sdt, sqdt, j_max);
#ifdef TM_USE_MPI
      printf("# Communication switched on: \n");
#endif
      printf("\n%12d Mflops(total) %8d Mflops(process)", (int)(g_nproc*1608.0f/sdt),(int)(1608.0f/sdt));
#ifdef TM_USE_OMP
      printf(" %8d Mflops(thread)",(int)(1608.0f/(omp_num_threads*sdt)));
#endif
      printf(" [ %d bit arithmetic ]\n\n",(int)(sizeof(spinor)/3)); 
      fflush(stdout);
    }
    
#ifdef TM_USE_MPI
    /* isolated computation */
    t1 = gettime();
    antioptaway=0.0;
    for (j=0;j<j_max;j++) {
      for (k=0;k<k_max;k++) {
        Hopping_Matrix_nocom(0, g_spinor_field[k+k_max], g_spinor_field[k]);
        Hopping_Matrix_nocom(1, g_spinor_field[2*k_max], g_spinor_field[k+k_max]);
        antioptaway += creal(g_spinor_field[2*k_max][0].s0.c0);
      }
    }
    t2 = gettime();
    dt2 = t2-t1;
    /* compute the bandwidth */
    dt=dts-dt2;
    MPI_Allreduce (&dt, &sdt, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
    sdt=sdt/((double)g_nproc);
    MPI_Allreduce (&dt2, &dt, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
    dt=dt/((double)g_nproc);
    dt=1.0e6f*dt/((double)(k_max*j_max*(VOLUME)));
    if(g_proc_id==0) {
      printf("# The following result is printed just to make sure that the calculation is not optimized away: %e\n",antioptaway);
      printf("# Communication switched off: \n\n%12d Mflops(total) %8d Mflops(process)", (int)(g_nproc*1608.0f/dt),(int)(1608.0f/dt));
#ifdef TM_USE_OMP
      printf(" %8d Mflops(thread)",(int)(1608.0f/(omp_num_threads*dt)));
#endif
      printf(" [ %d bit arithmetic ]\n\n",(int)(sizeof(spinor)/3)); 
      fflush(stdout);
    }
    sdt=sdt/((double)k_max);
    sdt=sdt/((double)j_max);
    sdt=sdt/((double)(2*SLICE));
    if(g_proc_id==0) {
      printf("# The size of the package is %d bytes.\n",(SLICE)*192);
#ifdef _USE_HALFSPINOR
      printf("# The bandwidth is %5.2f + %5.2f MB/sec\n", 192./sdt/1024/1024, 192./sdt/1024./1024);
#else
      printf("# The bandwidth is %5.2f + %5.2f MB/sec\n", 2.*192./sdt/1024/1024, 2.*192./sdt/1024./1024);
#endif
    }
#endif
    fflush(stdout);
  }
  else {
    /* the non even/odd case now */
    /*initialize the pseudo-fermion fields*/
    j_max=128;
    sdt=0.;
    for (k=0;k<k_max;k++) {
      random_spinor_field_lexic(g_spinor_field[k], reproduce_randomnumber_flag, RN_GAUSS);
    }
    
    /* estimate a reasonable number of applications to get a reliable measurement */
#ifdef TM_USE_MPI
    MPI_Barrier(MPI_COMM_WORLD);
#endif
    t1 = gettime();
    for (j=0;j<j_max;j++) {
      for (k=0;k<k_max;k++) {
        D_psi(g_spinor_field[k+k_max], g_spinor_field[k]);
        antioptaway+=creal(g_spinor_field[k+k_max][0].s0.c0);
      }
    }
    t2 = gettime();
    dt=t2-t1;
    // division by g_nproc because we will average over processes using  MPI_SUM
    j = (int)(ceil(j_max*31.0/dt/g_nproc));
#ifdef TM_USE_MPI
    MPI_Allreduce(&j,&j_max, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
#else
    j_max = j;
#endif

    /* perform the actual measurement */
#ifdef TM_USE_MPI
    MPI_Barrier(MPI_COMM_WORLD);
#endif
    t1 = gettime();
    for (j=0;j<j_max;j++) {
      for (k=0;k<k_max;k++) {
        D_psi(g_spinor_field[k+k_max], g_spinor_field[k]);
        antioptaway+=creal(g_spinor_field[k+k_max][0].s0.c0);
      }
    }
    t2 = gettime();
    dt=t2-t1;
#ifdef TM_USE_MPI
    MPI_Allreduce (&dt, &sdt, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#else
    sdt = dt;
#endif
    qdt=dt*dt;
#ifdef TM_USE_MPI
    MPI_Allreduce (&qdt, &sqdt, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#else
    sqdt = qdt;
#endif
    sdt=sdt/((double)g_nproc);
    sqdt=sqrt(sqdt/g_nproc-sdt*sdt);
    dts=dt;
    sdt=1.0e6f*sdt/((double)(k_max*j_max*(VOLUME)));
    sqdt=1.0e6f*sqdt/((double)(k_max*j_max*(VOLUME)));

    if(g_proc_id==0) {
      printf("# The following result is just to make sure that the calculation is not optimized away: %e\n", antioptaway);
      printf("# Total compute time %e sec, variance of the time %e sec. (%d iterations).\n\n", sdt, sqdt, j_max);
      printf(" %12d Mflops(total) %8d Mflops(process)", (int)(1680.0f*g_nproc/sdt),(int)(1680.0f/sdt));
#ifdef TM_USE_OMP
      printf(" %8d Mflops(thread)",(int)(1680.0f/(omp_num_threads*sdt)));
#endif
      printf(" [ %d bit arithmetic ]\n\n",(int)(sizeof(spinor)/3)); 
      fflush(stdout);
    }
  }

#ifdef HAVE_LIBLEMON
  if(g_proc_id==0) {
    printf("# Performing parallel IO test ...\n");
  }
  xlfInfo = construct_paramsXlfInfo(0.5, 0);
  write_gauge_field( "conf.test", 64, xlfInfo);
  free(xlfInfo);
  if(g_proc_id==0) {
    printf("# done ...\n");
  }
#endif


#ifdef TM_USE_OMP
  free_omp_accumulators();
#endif
  free_gauge_field();
  free_geometry_indices();
  free_spinor_field();
  free_moment_field();
#ifdef TM_USE_MPI
  MPI_Barrier(MPI_COMM_WORLD);
  MPI_Finalize();
#endif
  return(0);
}
Example #8
0
int main(int argc, char *argv[])
{
  FILE *parameterfile = NULL;
  int j, i, ix = 0, isample = 0, op_id = 0;
  char datafilename[206];
  char parameterfilename[206];
  char conf_filename[50];
  char * input_filename = NULL;
  char * filename = NULL;
  double plaquette_energy;
  struct stout_parameters params_smear;
  spinor **s, *s_;

#ifdef _KOJAK_INST
#pragma pomp inst init
#pragma pomp inst begin(main)
#endif

#if (defined SSE || defined SSE2 || SSE3)
  signal(SIGILL, &catch_ill_inst);
#endif

  DUM_DERI = 8;
  DUM_MATRIX = DUM_DERI + 5;
#if ((defined BGL && defined XLC) || defined _USE_TSPLITPAR)
  NO_OF_SPINORFIELDS = DUM_MATRIX + 3;
#else
  NO_OF_SPINORFIELDS = DUM_MATRIX + 3;
#endif

  verbose = 0;
  g_use_clover_flag = 0;

#ifdef MPI

#  ifdef OMP
  int mpi_thread_provided;
  MPI_Init_thread(&argc, &argv, MPI_THREAD_SERIALIZED, &mpi_thread_provided);
#  else
  MPI_Init(&argc, &argv);
#  endif

  MPI_Comm_rank(MPI_COMM_WORLD, &g_proc_id);
#else
  g_proc_id = 0;
#endif

  process_args(argc,argv,&input_filename,&filename);
  set_default_filenames(&input_filename, &filename);

  /* Read the input file */
  if( (j = read_input(input_filename)) != 0) {
    fprintf(stderr, "Could not find input file: %s\nAborting...\n", input_filename);
    exit(-1);
  }

#ifdef OMP
  init_openmp();
#endif

  /* this DBW2 stuff is not needed for the inversion ! */
  if (g_dflgcr_flag == 1) {
    even_odd_flag = 0;
  }
  g_rgi_C1 = 0;
  if (Nsave == 0) {
    Nsave = 1;
  }

  if (g_running_phmc) {
    NO_OF_SPINORFIELDS = DUM_MATRIX + 8;
  }

  tmlqcd_mpi_init(argc, argv);

  g_dbw2rand = 0;

  /* starts the single and double precision random number */
  /* generator                                            */
  start_ranlux(rlxd_level, random_seed);

  /* we need to make sure that we don't have even_odd_flag = 1 */
  /* if any of the operators doesn't use it                    */
  /* in this way even/odd can still be used by other operators */
  for(j = 0; j < no_operators; j++) if(!operator_list[j].even_odd_flag) even_odd_flag = 0;

#ifndef MPI
  g_dbw2rand = 0;
#endif

#ifdef _GAUGE_COPY
  j = init_gauge_field(VOLUMEPLUSRAND, 1);
#else
  j = init_gauge_field(VOLUMEPLUSRAND, 0);
#endif
  if (j != 0) {
    fprintf(stderr, "Not enough memory for gauge_fields! Aborting...\n");
    exit(-1);
  }
  j = init_geometry_indices(VOLUMEPLUSRAND);
  if (j != 0) {
    fprintf(stderr, "Not enough memory for geometry indices! Aborting...\n");
    exit(-1);
  }
  if (no_monomials > 0) {
    if (even_odd_flag) {
      j = init_monomials(VOLUMEPLUSRAND / 2, even_odd_flag);
    }
    else {
      j = init_monomials(VOLUMEPLUSRAND, even_odd_flag);
    }
    if (j != 0) {
      fprintf(stderr, "Not enough memory for monomial pseudo fermion fields! Aborting...\n");
      exit(-1);
    }
  }
  if (even_odd_flag) {
    j = init_spinor_field(VOLUMEPLUSRAND / 2, NO_OF_SPINORFIELDS);
  }
  else {
    j = init_spinor_field(VOLUMEPLUSRAND, NO_OF_SPINORFIELDS);
  }
  if (j != 0) {
    fprintf(stderr, "Not enough memory for spinor fields! Aborting...\n");
    exit(-1);
  }

  if (g_running_phmc) {
    j = init_chi_spinor_field(VOLUMEPLUSRAND / 2, 20);
    if (j != 0) {
      fprintf(stderr, "Not enough memory for PHMC Chi fields! Aborting...\n");
      exit(-1);
    }
  }

  g_mu = g_mu1;

  if (g_cart_id == 0) {
    /*construct the filenames for the observables and the parameters*/
    strncpy(datafilename, filename, 200);
    strcat(datafilename, ".data");
    strncpy(parameterfilename, filename, 200);
    strcat(parameterfilename, ".para");

    parameterfile = fopen(parameterfilename, "w");
    write_first_messages(parameterfile, "invert", git_hash);
    fclose(parameterfile);
  }

  /* define the geometry */
  geometry();

  /* define the boundary conditions for the fermion fields */
  boundary(g_kappa);

  phmc_invmaxev = 1.;

  init_operators();

  /* list and initialize measurements*/
  if(g_proc_id == 0) {
    printf("\n");
    for(int j = 0; j < no_measurements; j++) {
      printf("# measurement id %d, type = %d\n", j, measurement_list[j].type);
    }
  }
  init_measurements();  

  /* this could be maybe moved to init_operators */
#ifdef _USE_HALFSPINOR
  j = init_dirac_halfspinor();
  if (j != 0) {
    fprintf(stderr, "Not enough memory for halffield! Aborting...\n");
    exit(-1);
  }
  if (g_sloppy_precision_flag == 1) {
    j = init_dirac_halfspinor32();
    if (j != 0)
    {
      fprintf(stderr, "Not enough memory for 32-bit halffield! Aborting...\n");
      exit(-1);
    }
  }
#  if (defined _PERSISTENT)
  if (even_odd_flag)
    init_xchange_halffield();
#  endif
#endif

  for (j = 0; j < Nmeas; j++) {
    sprintf(conf_filename, "%s.%.4d", gauge_input_filename, nstore);
    if (g_cart_id == 0) {
      printf("#\n# Trying to read gauge field from file %s in %s precision.\n",
            conf_filename, (gauge_precision_read_flag == 32 ? "single" : "double"));
      fflush(stdout);
    }
    if( (i = read_gauge_field(conf_filename,g_gauge_field)) !=0) {
      fprintf(stderr, "Error %d while reading gauge field from %s\n Aborting...\n", i, conf_filename);
      exit(-2);
    }


    if (g_cart_id == 0) {
      printf("# Finished reading gauge field.\n");
      fflush(stdout);
    }
#ifdef MPI
    xchange_gauge(g_gauge_field);
#endif

    /*compute the energy of the gauge field*/
    plaquette_energy = measure_plaquette( (const su3**) g_gauge_field);

    if (g_cart_id == 0) {
      printf("# The computed plaquette value is %e.\n", plaquette_energy / (6.*VOLUME*g_nproc));
      fflush(stdout);
    }

    if (use_stout_flag == 1){
      params_smear.rho = stout_rho;
      params_smear.iterations = stout_no_iter;
/*       if (stout_smear((su3_tuple*)(g_gauge_field[0]), &params_smear, (su3_tuple*)(g_gauge_field[0])) != 0) */
/*         exit(1) ; */
      g_update_gauge_copy = 1;
      plaquette_energy = measure_plaquette( (const su3**) g_gauge_field);

      if (g_cart_id == 0) {
        printf("# The plaquette value after stouting is %e\n", plaquette_energy / (6.*VOLUME*g_nproc));
        fflush(stdout);
      }
    }

    /* if any measurements are defined in the input file, do them here */
    measurement * meas;
    for(int imeas = 0; imeas < no_measurements; imeas++){
      meas = &measurement_list[imeas];
      if (g_proc_id == 0) {
        fprintf(stdout, "#\n# Beginning online measurement.\n");
      }
      meas->measurefunc(nstore, imeas, even_odd_flag);
    }

    if (reweighting_flag == 1) {
      reweighting_factor(reweighting_samples, nstore);
    }

    /* Compute minimal eigenvalues, if wanted */
    if (compute_evs != 0) {
      eigenvalues(&no_eigenvalues, 5000, eigenvalue_precision,
                  0, compute_evs, nstore, even_odd_flag);
    }
    if (phmc_compute_evs != 0) {
#ifdef MPI
      MPI_Finalize();
#endif
      return(0);
    }

    /* Compute the mode number or topological susceptibility using spectral projectors, if wanted*/

    if(compute_modenumber != 0 || compute_topsus !=0){
      
      s_ = calloc(no_sources_z2*VOLUMEPLUSRAND+1, sizeof(spinor));
      s  = calloc(no_sources_z2, sizeof(spinor*));
      if(s_ == NULL) { 
	printf("Not enough memory in %s: %d",__FILE__,__LINE__); exit(42); 
      }
      if(s == NULL) { 
	printf("Not enough memory in %s: %d",__FILE__,__LINE__); exit(42); 
      }
      
      
      for(i = 0; i < no_sources_z2; i++) {
#if (defined SSE3 || defined SSE2 || defined SSE)
        s[i] = (spinor*)(((unsigned long int)(s_)+ALIGN_BASE)&~ALIGN_BASE)+i*VOLUMEPLUSRAND;
#else
        s[i] = s_+i*VOLUMEPLUSRAND;
#endif
	
        random_spinor_field_lexic(s[i], reproduce_randomnumber_flag,RN_Z2);
	
/* 	what is this here needed for?? */
/*         spinor *aux_,*aux; */
/* #if ( defined SSE || defined SSE2 || defined SSE3 ) */
/*         aux_=calloc(VOLUMEPLUSRAND+1, sizeof(spinor)); */
/*         aux = (spinor *)(((unsigned long int)(aux_)+ALIGN_BASE)&~ALIGN_BASE); */
/* #else */
/*         aux_=calloc(VOLUMEPLUSRAND, sizeof(spinor)); */
/*         aux = aux_; */
/* #endif */
	
        if(g_proc_id == 0) {
          printf("source %d \n", i);
        }
	
        if(compute_modenumber != 0){
          mode_number(s[i], mstarsq);
        }
	
        if(compute_topsus !=0) {
          top_sus(s[i], mstarsq);
        }
      }
      free(s);
      free(s_);
    }


    /* move to operators as well */
    if (g_dflgcr_flag == 1) {
      /* set up deflation blocks */
      init_blocks(nblocks_t, nblocks_x, nblocks_y, nblocks_z);

      /* the can stay here for now, but later we probably need */
      /* something like init_dfl_solver called somewhere else  */
      /* create set of approximate lowest eigenvectors ("global deflation subspace") */

      /*       g_mu = 0.; */
      /*       boundary(0.125); */
      generate_dfl_subspace(g_N_s, VOLUME, reproduce_randomnumber_flag);
      /*       boundary(g_kappa); */
      /*       g_mu = g_mu1; */

      /* Compute little Dirac operators */
      /*       alt_block_compute_little_D(); */
      if (g_debug_level > 0) {
        check_projectors(reproduce_randomnumber_flag);
        check_local_D(reproduce_randomnumber_flag);
      }
      if (g_debug_level > 1) {
        check_little_D_inversion(reproduce_randomnumber_flag);
      }

    }
    if(SourceInfo.type == 1) {
      index_start = 0;
      index_end = 1;
    }

    g_precWS=NULL;
    if(use_preconditioning == 1){
      /* todo load fftw wisdom */
#if (defined HAVE_FFTW ) && !( defined MPI)
      loadFFTWWisdom(g_spinor_field[0],g_spinor_field[1],T,LX);
#else
      use_preconditioning=0;
#endif
    }

    if (g_cart_id == 0) {
      fprintf(stdout, "#\n"); /*Indicate starting of the operator part*/
    }
    for(op_id = 0; op_id < no_operators; op_id++) {
      boundary(operator_list[op_id].kappa);
      g_kappa = operator_list[op_id].kappa; 
      g_mu = 0.;

      if(use_preconditioning==1 && PRECWSOPERATORSELECT[operator_list[op_id].solver]!=PRECWS_NO ){
        printf("# Using preconditioning with treelevel preconditioning operator: %s \n",
              precWSOpToString(PRECWSOPERATORSELECT[operator_list[op_id].solver]));
        /* initial preconditioning workspace */
        operator_list[op_id].precWS=(spinorPrecWS*)malloc(sizeof(spinorPrecWS));
        spinorPrecWS_Init(operator_list[op_id].precWS,
                  operator_list[op_id].kappa,
                  operator_list[op_id].mu/2./operator_list[op_id].kappa,
                  -(0.5/operator_list[op_id].kappa-4.),
                  PRECWSOPERATORSELECT[operator_list[op_id].solver]);
        g_precWS = operator_list[op_id].precWS;

        if(PRECWSOPERATORSELECT[operator_list[op_id].solver] == PRECWS_D_DAGGER_D) {
          fitPrecParams(op_id);
        }
      }

      for(isample = 0; isample < no_samples; isample++) {
        for (ix = index_start; ix < index_end; ix++) {
          if (g_cart_id == 0) {
            fprintf(stdout, "#\n"); /*Indicate starting of new index*/
          }
          /* we use g_spinor_field[0-7] for sources and props for the moment */
          /* 0-3 in case of 1 flavour  */
          /* 0-7 in case of 2 flavours */
          prepare_source(nstore, isample, ix, op_id, read_source_flag, source_location);
          //randmize initial guess for eigcg if needed-----experimental
          if( (operator_list[op_id].solver == INCREIGCG) && (operator_list[op_id].solver_params.eigcg_rand_guess_opt) ){ //randomize the initial guess
              gaussian_volume_source( operator_list[op_id].prop0, operator_list[op_id].prop1,isample,ix,0); //need to check this
          } 
          operator_list[op_id].inverter(op_id, index_start, 1);
        }
      }


      if(use_preconditioning==1 && operator_list[op_id].precWS!=NULL ){
        /* free preconditioning workspace */
        spinorPrecWS_Free(operator_list[op_id].precWS);
        free(operator_list[op_id].precWS);
      }

      if(operator_list[op_id].type == OVERLAP){
        free_Dov_WS();
      }

    }
    nstore += Nsave;
  }

#ifdef OMP
  free_omp_accumulators();
#endif
  free_blocks();
  free_dfl_subspace();
  free_gauge_field();
  free_geometry_indices();
  free_spinor_field();
  free_moment_field();
  free_chi_spinor_field();
  free(filename);
  free(input_filename);
#ifdef MPI
  MPI_Barrier(MPI_COMM_WORLD);
  MPI_Finalize();
#endif
  return(0);
#ifdef _KOJAK_INST
#pragma pomp inst end(main)
#endif
}