void CHKERR(LIS_INT ierr)
{
if(ierr)
{
lis_finalize();
exit(ierr);
}
}
void lis_finalize_f(LIS_INT *ierr)
{
LIS_DEBUG_FUNC_IN;
*ierr = lis_finalize();
LIS_DEBUG_FUNC_OUT;
return;
}
int main(int argc, char *argv[]) {
int i, n_steps, grid[lbmodel.n_dim], vol;
double rho, gamma, kappa;
double start, finish, elapsed, mups;
if (argc!=3) {
fprintf(stderr, "Usage: ./run <kappa> <nsteps>\n");
return -1;
}
lis_initialize(&argc, &argv);
n_steps = atoi(argv[2]);
grid[0] = 100;
grid[1] = 20;
vol = grid[0]*grid[1];
rho = 1.0;
gamma = 0.0;
kappa = atof(argv[1]);
write_eos();
char filename[1024];
sprintf(filename, "profile_k%.03f.dat", kappa);
lb_init(grid,rho,gamma,kappa); lb_mass_mom(0);
fprintf(stdout, "Running %d iterations\n", n_steps); fflush(stdout);
start = (double) clock();
for (i=0; i<n_steps; ++i) {
lb_update(lbf);
lb_mass_mom(i+1);
write_profile(filename, 0);
}
finish = (double) clock();
elapsed = (finish-start)/CLOCKS_PER_SEC;
mups = vol*n_steps/elapsed/1e6;
fprintf(stdout, "Elapsed time: %.3f s (%.3e MUPS)\n", elapsed, mups); fflush(stdout);
write_profile(filename, 0);
lb_finalize();
lis_finalize();
return EXIT_SUCCESS;
}
void CHKERR_f(LIS_INT *err)
{
LIS_DEBUG_FUNC_IN;
if(*err)
{
lis_finalize();
exit(*err);
}
LIS_DEBUG_FUNC_OUT;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_INT i,n,gn,is,ie;
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT nesol;
LIS_MATRIX A;
LIS_VECTOR x;
LIS_REAL evalue0;
LIS_ESOLVER esolver;
LIS_REAL residual;
LIS_INT iter;
double time;
double itime,ptime,p_c_time,p_i_time;
char esolvername[128];
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 2 )
{
if( my_rank==0 )
{
printf("Usage: %s n [eoptions]\n", argv[0]);
}
CHKERR(1);
}
if( my_rank==0 )
{
printf("\n");
printf("number of processes = %d\n",nprocs);
}
#ifdef _OPENMP
if( my_rank==0 )
{
#ifdef _LONG__LONG
printf("max number of threads = %lld\n",omp_get_num_procs());
printf("number of threads = %lld\n",omp_get_max_threads());
#else
printf("max number of threads = %d\n",omp_get_num_procs());
printf("number of threads = %d\n",omp_get_max_threads());
#endif
}
#endif
/* generate coefficient matrix for one dimensional Poisson equation */
n = atoi(argv[1]);
lis_matrix_create(LIS_COMM_WORLD,&A);
lis_matrix_set_size(A,0,n);
lis_matrix_get_size(A,&n,&gn);
lis_matrix_get_range(A,&is,&ie);
for(i=is;i<ie;i++)
{
if( i>0 ) lis_matrix_set_value(LIS_INS_VALUE,i,i-1,-1.0,A);
if( i<gn-1 ) lis_matrix_set_value(LIS_INS_VALUE,i,i+1,-1.0,A);
lis_matrix_set_value(LIS_INS_VALUE,i,i,2.0,A);
}
lis_matrix_set_type(A,LIS_MATRIX_CSR);
lis_matrix_assemble(A);
lis_vector_duplicate(A,&x);
lis_esolver_create(&esolver);
lis_esolver_set_option("-eprint mem",esolver);
lis_esolver_set_optionC(esolver);
lis_esolve(A, x, &evalue0, esolver);
lis_esolver_get_esolver(esolver,&nesol);
lis_esolver_get_esolvername(nesol,esolvername);
lis_esolver_get_residualnorm(esolver, &residual);
lis_esolver_get_iter(esolver, &iter);
lis_esolver_get_timeex(esolver,&time,&itime,&ptime,&p_c_time,&p_i_time);
if( my_rank==0 ) {
printf("%s: mode number = %d\n", esolvername, 0);
#ifdef _LONG__DOUBLE
printf("%s: eigenvalue = %Le\n", esolvername, evalue0);
#else
printf("%s: eigenvalue = %e\n", esolvername, evalue0);
#endif
#ifdef _LONG__LONG
printf("%s: number of iterations = %lld\n",esolvername, iter);
#else
printf("%s: number of iterations = %d\n",esolvername, iter);
#endif
printf("%s: elapsed time = %e sec.\n", esolvername, time);
printf("%s: preconditioner = %e sec.\n", esolvername, ptime);
printf("%s: matrix creation = %e sec.\n", esolvername, p_c_time);
printf("%s: linear solver = %e sec.\n", esolvername, itime);
#ifdef _LONG__DOUBLE
printf("%s: relative residual = %Le\n\n",esolvername, residual);
#else
printf("%s: relative residual = %e\n\n",esolvername, residual);
#endif
}
/*
lis_vector_nrm2(x, &xnrm2);
lis_vector_scale((1/xnrm2*sqrt(n)), x);
lis_vector_print(x);
*/
/*
lis_vector_create(LIS_COMM_WORLD,&y);
lis_matrix_create(LIS_COMM_WORLD,&B);
lis_esolver_get_evalues(esolver,y);
lis_esolver_get_evectors(esolver,B);
lis_output_vector(y,LIS_FMT_MM,"evalues.out");
lis_output_matrix(B,LIS_FMT_MM,"evectors.out");
lis_vector_destroy(y);
lis_matrix_destroy(B);
*/
lis_esolver_destroy(esolver);
lis_matrix_destroy(A);
lis_vector_destroy(x);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_MATRIX A0,A;
LIS_VECTOR x,b,u;
LIS_SOLVER solver;
LIS_INT m,n,nn,nnz;
LIS_INT i,j,ii,jj,ctr;
LIS_INT is,ie;
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT nsol;
LIS_INT err,iter,mtype,iter_double,iter_quad;
double time,itime,ptime,p_c_time,p_i_time;
LIS_REAL resid;
char solvername[128];
LIS_INT *ptr,*index;
LIS_SCALAR *value;
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 6 )
{
if( my_rank==0 )
{
printf("Usage: %s m n matrix_type solution_filename rhistory_filename [options]\n", argv[0]);
}
CHKERR(1);
}
m = atoi(argv[1]);
n = atoi(argv[2]);
mtype = atoi(argv[3]);
if( m<=0 || n<=0 )
{
#ifdef _LONGLONG
if( my_rank==0 ) printf("m=%lld <=0 or n=%lld <=0\n",m,n);
#else
if( my_rank==0 ) printf("m=%d <=0 or n=%d <=0\n",m,n);
#endif
CHKERR(1);
}
if( my_rank==0 )
{
printf("\n");
#ifdef _LONGLONG
printf("number of processes = %lld\n",nprocs);
#else
printf("number of processes = %d\n",nprocs);
#endif
}
#ifdef _OPENMP
if( my_rank==0 )
{
#ifdef _LONGLONG
printf("max number of threads = %lld\n",omp_get_num_procs());
printf("number of threads = %lld\n",omp_get_max_threads());
#else
printf("max number of threads = %d\n",omp_get_num_procs());
printf("number of threads = %d\n",omp_get_max_threads());
#endif
}
#endif
/* create matrix and vectors */
nn = m*n;
err = lis_matrix_create(LIS_COMM_WORLD,&A);
err = lis_matrix_set_size(A,0,nn);
CHKERR(err);
ptr = (LIS_INT *)malloc((A->n+1)*sizeof(LIS_INT));
if( ptr==NULL ) CHKERR(1);
index = (LIS_INT *)malloc(5*A->n*sizeof(LIS_INT));
if( index==NULL ) CHKERR(1);
value = (LIS_SCALAR *)malloc(5*A->n*sizeof(LIS_SCALAR));
if( value==NULL ) CHKERR(1);
lis_matrix_get_range(A,&is,&ie);
ctr = 0;
for(ii=is;ii<ie;ii++)
{
i = ii/m;
j = ii - i*m;
if( i>0 ) { jj = ii - m; index[ctr] = jj; value[ctr++] = -1.0;}
if( i<n-1 ) { jj = ii + m; index[ctr] = jj; value[ctr++] = -1.0;}
if( j>0 ) { jj = ii - 1; index[ctr] = jj; value[ctr++] = -1.0;}
if( j<m-1 ) { jj = ii + 1; index[ctr] = jj; value[ctr++] = -1.0;}
index[ctr] = ii; value[ctr++] = 4.0;
ptr[ii-is+1] = ctr;
}
ptr[0] = 0;
err = lis_matrix_set_csr(ptr[ie-is],ptr,index,value,A);
CHKERR(err);
err = lis_matrix_assemble(A);
CHKERR(err);
nnz = A->nnz;
#ifdef USE_MPI
MPI_Allreduce(&nnz,&i,1,LIS_MPI_INT,MPI_SUM,A->comm);
nnz = i;
#endif
#ifdef _LONGLONG
if( my_rank==0 ) printf("matrix size = %lld x %lld (%lld nonzero entries)\n\n",nn,nn,nnz);
#else
if( my_rank==0 ) printf("matrix size = %d x %d (%d nonzero entries)\n\n",nn,nn,nnz);
#endif
err = lis_matrix_duplicate(A,&A0);
CHKERR(err);
lis_matrix_set_type(A0,mtype);
err = lis_matrix_convert(A,A0);
CHKERR(err);
lis_matrix_destroy(A);
A = A0;
err = lis_vector_duplicate(A,&u);
CHKERR(err);
err = lis_vector_duplicate(A,&b);
CHKERR(err);
err = lis_vector_duplicate(A,&x);
CHKERR(err);
err = lis_vector_set_all(1.0,u);
lis_matvec(A,u,b);
err = lis_solver_create(&solver); CHKERR(err);
lis_solver_set_option("-print mem",solver);
lis_solver_set_optionC(solver);
err = lis_solve(A,b,x,solver);
CHKERR(err);
lis_solver_get_iterex(solver,&iter,&iter_double,&iter_quad);
lis_solver_get_timeex(solver,&time,&itime,&ptime,&p_c_time,&p_i_time);
lis_solver_get_residualnorm(solver,&resid);
lis_solver_get_solver(solver,&nsol);
lis_solver_get_solvername(nsol,solvername);
if( my_rank==0 )
{
#ifdef _LONGLONG
#ifdef _LONG__DOUBLE
printf("%s: number of iterations = %lld \n",solvername, iter);
#else
printf("%s: number of iterations = %lld (double = %lld, quad = %lld)\n",solvername,iter, iter_double, iter_quad);
#endif
#else
#ifdef _LONG__DOUBLE
printf("%s: number of iterations = %d \n",solvername, iter);
#else
printf("%s: number of iterations = %d (double = %d, quad = %d)\n",solvername,iter, iter_double, iter_quad);
#endif
#endif
printf("%s: elapsed time = %e sec.\n",solvername,time);
printf("%s: preconditioner = %e sec.\n",solvername, ptime);
printf("%s: matrix creation = %e sec.\n",solvername, p_c_time);
printf("%s: linear solver = %e sec.\n",solvername, itime);
#ifdef _LONG__DOUBLE
printf("%s: relative residual = %Le\n\n",solvername,resid);
#else
printf("%s: relative residual = %e\n\n",solvername,resid);
#endif
}
/* write solution */
lis_output_vector(x,LIS_FMT_MM,argv[4]);
/* write residual history */
lis_solver_output_rhistory(solver, argv[5]);
lis_solver_destroy(solver);
lis_matrix_destroy(A);
lis_vector_destroy(b);
lis_vector_destroy(x);
lis_vector_destroy(u);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_MATRIX A;
LIS_VECTOR x,b,u;
LIS_SOLVER solver;
LIS_INT k,n,gn,ii,jj;
LIS_INT is,ie;
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT nsol;
LIS_INT err,iter,iter_double,iter_quad;
double time,itime,ptime,p_c_time,p_i_time;
LIS_REAL resid;
char solvername[128];
LIS_INT *ptr,*index;
LIS_SCALAR *value,gamma;
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 3 )
{
if( my_rank==0 )
{
printf("Usage: %s n gamma [options]\n", argv[0]);
}
CHKERR(1);
}
gn = atoi(argv[1]);
gamma = atof(argv[2]);
if( gn<=0 )
{
#ifdef _LONGLONG
if( my_rank==0 ) printf("n=%lld <=0 \n",gn);
#else
if( my_rank==0 ) printf("n=%d <=0 \n",gn);
#endif
CHKERR(1);
}
if( my_rank==0 )
{
printf("\n");
#ifdef _LONGLONG
printf("number of processes = %lld\n",nprocs);
#else
printf("number of processes = %d\n",nprocs);
#endif
}
#ifdef _OPENMP
if( my_rank==0 )
{
#ifdef _LONGLONG
printf("max number of threads = %lld\n",omp_get_num_procs());
printf("number of threads = %lld\n",omp_get_max_threads());
#else
printf("max number of threads = %d\n",omp_get_num_procs());
printf("number of threads = %d\n",omp_get_max_threads());
#endif
}
#endif
if(my_rank==0)
{
#ifdef _LONGLONG
printf("n = %lld, gamma = %f\n\n",gn,gamma);
#else
printf("n = %d, gamma = %f\n\n",gn,gamma);
#endif
}
/* create matrix and vectors */
err = lis_matrix_create(LIS_COMM_WORLD,&A); CHKERR(err);
err = lis_matrix_set_size(A,0,gn); CHKERR(err);
err = lis_matrix_get_size(A,&n,&gn); CHKERR(err);
err = lis_matrix_malloc_csr(n,3*n,&ptr,&index,&value); CHKERR(err);
err = lis_matrix_get_range(A,&is,&ie); CHKERR(err);
k = 0;
ptr[0] = 0;
for(ii=is;ii<ie;ii++)
{
if( ii>1 ) { jj = ii - 2; index[k] = jj; value[k++] = gamma;}
if( ii<gn-1 ) { jj = ii + 1; index[k] = jj; value[k++] = 1.0;}
index[k] = ii; value[k++] = 2.0;
ptr[ii-is+1] = k;
}
err = lis_matrix_set_csr(ptr[ie-is],ptr,index,value,A); CHKERR(err);
err = lis_matrix_assemble(A); CHKERR(err);
err = lis_vector_duplicate(A,&u); CHKERR(err);
err = lis_vector_duplicate(u,&b); CHKERR(err);
err = lis_vector_duplicate(u,&x); CHKERR(err);
err = lis_vector_set_all(1.0,u);
lis_matvec(A,u,b);
err = lis_solver_create(&solver); CHKERR(err);
lis_solver_set_option("-print mem",solver);
lis_solver_set_optionC(solver);
err = lis_solve(A,b,x,solver); CHKERR(err);
lis_solver_get_iterex(solver,&iter,&iter_double,&iter_quad);
lis_solver_get_timeex(solver,&time,&itime,&ptime,&p_c_time,&p_i_time);
lis_solver_get_residualnorm(solver,&resid);
lis_solver_get_solver(solver,&nsol);
lis_solver_get_solvername(nsol,solvername);
if( my_rank==0 )
{
#ifdef _LONGLONG
#ifdef _LONG__DOUBLE
printf("%s: number of iterations = %lld \n",solvername, iter);
#else
printf("%s: number of iterations = %lld (double = %lld, quad = %lld)\n",solvername,iter, iter_double, iter_quad);
#endif
#else
#ifdef _LONG__DOUBLE
printf("%s: number of iterations = %d \n",solvername, iter);
#else
printf("%s: number of iterations = %d (double = %d, quad = %d)\n",solvername,iter, iter_double, iter_quad);
#endif
#endif
printf("%s: elapsed time = %e sec.\n",solvername,time);
printf("%s: preconditioner = %e sec.\n",solvername, ptime);
printf("%s: matrix creation = %e sec.\n",solvername, p_c_time);
printf("%s: linear solver = %e sec.\n",solvername, itime);
#ifdef _LONG__DOUBLE
printf("%s: relative residual = %Le\n\n",solvername,resid);
#else
printf("%s: relative residual = %e\n\n",solvername,resid);
#endif
}
lis_solver_destroy(solver);
lis_matrix_destroy(A);
lis_vector_destroy(b);
lis_vector_destroy(x);
lis_vector_destroy(u);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_MATRIX A,A0;
LIS_VECTOR b,x;
LIS_SCALAR *value;
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT nthreads,maxthreads;
LIS_INT gn,nnz,np;
LIS_INT i,j,k,si,sj,sk,ii,jj,ctr;
LIS_INT l,m,n,nn;
LIS_INT is,ie;
LIS_INT err,iter,matrix_type,storage,ss,se;
LIS_INT *ptr,*index;
double time,time2,nnzs,nnzap,nnzt;
LIS_SCALAR val;
double commtime,comptime,flops;
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 5 )
{
if( my_rank==0 )
{
printf("Usage: %s l m n iter [matrix_type]\n", argv[0]);
}
CHKERR(1);
}
l = atoi(argv[1]);
m = atoi(argv[2]);
n = atoi(argv[3]);
iter = atoi(argv[4]);
if (argv[5] == NULL) {
storage = 0;
}
else {
storage = atoi(argv[5]);
}
if( iter<=0 )
{
#ifdef _LONG__LONG
if( my_rank==0 ) printf("iter=%lld <= 0\n",iter);
#else
if( my_rank==0 ) printf("iter=%d <= 0\n",iter);
#endif
CHKERR(1);
}
if( l<=0 || m<=0 || n<=0 )
{
#ifdef _LONG__LONG
if( my_rank==0 ) printf("l=%lld <=0, m=%lld <=0 or n=%lld <=0\n",l,m,n);
#else
if( my_rank==0 ) printf("l=%d <=0, m=%d <=0 or n=%d <=0\n",l,m,n);
#endif
CHKERR(1);
}
if( storage<0 || storage>11 )
{
#ifdef _LONG__LONG
if( my_rank==0 ) printf("matrix_type=%lld < 0 or matrix_type=%lld > 11\n",storage,storage);
#else
if( my_rank==0 ) printf("matrix_type=%d < 0 or matrix_type=%d > 11\n",storage,storage);
#endif
CHKERR(1);
}
if( my_rank==0 )
{
printf("\n");
#ifdef _LONG__LONG
printf("number of processes = %lld\n",nprocs);
#else
printf("number of processes = %d\n",nprocs);
#endif
}
#ifdef _OPENMP
nthreads = omp_get_num_procs();
maxthreads = omp_get_max_threads();
if( my_rank==0 )
{
#ifdef _LONG__LONG
printf("max number of threads = %lld\n", nthreads);
printf("number of threads = %lld\n", maxthreads);
#else
printf("max number of threads = %d\n", nthreads);
printf("number of threads = %d\n", maxthreads);
#endif
}
#else
nthreads = 1;
maxthreads = 1;
#endif
/* create matrix and vectors */
nn = l*m*n;
err = lis_matrix_create(LIS_COMM_WORLD,&A0);
err = lis_matrix_set_size(A0,0,nn);
CHKERR(err);
ptr = (LIS_INT *)malloc((A0->n+1)*sizeof(LIS_INT));
if( ptr==NULL ) CHKERR(1);
index = (LIS_INT *)malloc(27*A0->n*sizeof(LIS_INT));
if( index==NULL ) CHKERR(1);
value = (LIS_SCALAR *)malloc(27*A0->n*sizeof(LIS_SCALAR));
if( value==NULL ) CHKERR(1);
lis_matrix_get_range(A0,&is,&ie);
ctr = 0;
for(ii=is;ii<ie;ii++)
{
i = ii/(m*n);
j = (ii - i*m*n)/n;
k = ii - i*m*n - j*n;
for(si=-1;si<=1;si++) {
if( i+si>-1 && i+si<l ) {
for(sj=-1;sj<=1;sj++) {
if( j+sj>-1 && j+sj<m ) {
for(sk=-1;sk<=1;sk++) {
if( k+sk>-1 && k+sk<n ) {
jj = ii + si*m*n + sj*n + sk;
index[ctr] = jj;
if( jj==ii ) { value[ctr++] = 26.0;}
else { value[ctr++] = -1.0;}
}
}
}
}
}
}
ptr[ii-is+1] = ctr;
}
ptr[0] = 0;
err = lis_matrix_set_csr(ptr[ie-is],ptr,index,value,A0);
CHKERR(err);
err = lis_matrix_assemble(A0);
CHKERR(err);
n = A0->n;
gn = A0->gn;
nnz = A0->nnz;
np = A0->np-n;
#ifdef USE_MPI
MPI_Allreduce(&nnz,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
nnzap = (double)i / (double)nprocs;
nnzt = ((double)nnz -nnzap)*((double)nnz -nnzap);
nnz = i;
MPI_Allreduce(&nnzt,&nnzs,1,MPI_DOUBLE,MPI_SUM,A0->comm);
nnzs = (nnzs / (double)nprocs)/nnzap;
MPI_Allreduce(&np,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
np = i;
#endif
if( my_rank==0 )
{
#ifdef _LONG__LONG
printf("matrix size = %lld x %lld (%lld nonzero entries)\n",gn,gn,nnz);
printf("number of iterations = %lld\n\n",iter);
#else
printf("matrix size = %d x %d (%d nonzero entries)\n",gn,gn,nnz);
printf("number of iterations = %d\n\n",iter);
#endif
}
err = lis_vector_duplicate(A0,&x);
if( err ) CHKERR(err);
err = lis_vector_duplicate(A0,&b);
if( err ) CHKERR(err);
lis_matrix_get_range(A0,&is,&ie);
for(i=0;i<n;i++)
{
err = lis_vector_set_value(LIS_INS_VALUE,i+is,1.0,x);
}
for(i=0;i<n;i++)
{
lis_sort_id(A0->ptr[i],A0->ptr[i+1]-1,A0->index,A0->value);
}
/*
MPI version of VBR is not implemented.
DNS is also excluded to reduce memory usage.
*/
if (storage==0)
{
ss = 1;
se = 11;
}
else
{
ss = storage;
se = storage+1;
}
for (matrix_type=ss;matrix_type<se;matrix_type++)
{
if ( nprocs>1 && matrix_type==9 ) continue;
lis_matrix_duplicate(A0,&A);
lis_matrix_set_type(A,matrix_type);
err = lis_matrix_convert(A0,A);
if( err ) CHKERR(err);
comptime = 0.0;
commtime = 0.0;
for(i=0;i<iter;i++)
{
#ifdef USE_MPI
MPI_Barrier(A->comm);
time = lis_wtime();
lis_send_recv(A->commtable,x->value);
commtime += lis_wtime() - time;
#endif
time2 = lis_wtime();
lis_matvec(A,x,b);
comptime += lis_wtime() - time2;
}
lis_vector_nrm2(b,&val);
if( my_rank==0 )
{
flops = 2.0*nnz*iter*1.0e-6 / comptime;
#ifdef USE_MPI
#ifdef _LONG__DOUBLE
#ifdef _LONG__LONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#endif
#else
#ifdef _LONG__LONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#endif
#endif
#else
#ifdef _LONG__DOUBLE
#ifdef _LONG__LONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#endif
#else
#ifdef _LONG__LONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#endif
#endif
#endif
}
lis_matrix_destroy(A);
}
lis_matrix_destroy(A0);
lis_vector_destroy(b);
lis_vector_destroy(x);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(int argc, char* argv[])
{
LIS_Comm comm;
LIS_INT err;
int nprocs,my_rank;
LIS_INT nesol;
LIS_MATRIX A,B;
LIS_VECTOR x;
LIS_SCALAR evalue0;
LIS_ESOLVER esolver;
LIS_REAL residual;
LIS_INT iter;
double time;
double itime,ptime,p_c_time,p_i_time;
char esolvername[128];
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
comm = LIS_COMM_WORLD;
#ifdef USE_MPI
MPI_Comm_size(comm,&nprocs);
MPI_Comm_rank(comm,&my_rank);
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 5 )
{
lis_printf(comm,"Usage: %s matrix_a_filename matrix_b_filename evector_filename rhistory_filename [options]\n", argv[0]);
CHKERR(1);
}
lis_printf(comm,"\n");
lis_printf(comm,"number of processes = %d\n",nprocs);
#ifdef _OPENMP
lis_printf(comm,"max number of threads = %d\n",omp_get_num_procs());
lis_printf(comm,"number of threads = %d\n",omp_get_max_threads());
#endif
/* create matrix and vectors */
lis_matrix_create(comm,&A);
lis_matrix_create(comm,&B);
lis_printf(comm,"\nmatrix A:\n");
lis_input_matrix(A,argv[1]);
lis_printf(comm,"matrix B:\n");
lis_input_matrix(B,argv[2]);
lis_vector_duplicate(A,&x);
lis_esolver_create(&esolver);
lis_esolver_set_option("-e gii -eprint mem",esolver);
err = lis_esolver_set_optionC(esolver);
CHKERR(err);
err = lis_gesolve(A,B,x,&evalue0,esolver);
CHKERR(err);
lis_esolver_get_esolver(esolver,&nesol);
lis_esolver_get_esolvername(nesol,esolvername);
lis_esolver_get_residualnorm(esolver,&residual);
lis_esolver_get_iter(esolver,&iter);
lis_esolver_get_timeex(esolver,&time,&itime,&ptime,&p_c_time,&p_i_time);
lis_printf(comm,"%s: mode number = %d\n", esolvername, 0);
#ifdef _COMPLEX
lis_printf(comm,"%s: eigenvalue = (%e, %e)\n", esolvername, (double)creal(evalue0), (double)cimag(evalue0));
#else
lis_printf(comm,"%s: eigenvalue = %e\n", esolvername, (double)evalue0);
#endif
lis_printf(comm,"%s: number of iterations = %D\n",esolvername, iter);
lis_printf(comm,"%s: elapsed time = %e sec.\n", esolvername, time);
lis_printf(comm,"%s: preconditioner = %e sec.\n", esolvername, ptime);
lis_printf(comm,"%s: matrix creation = %e sec.\n", esolvername, p_c_time);
lis_printf(comm,"%s: linear solver = %e sec.\n", esolvername, itime);
lis_printf(comm,"%s: relative residual = %e\n\n",esolvername, (double)residual);
/* write eigenvector */
lis_output_vector(x,LIS_FMT_MM,argv[3]);
/* write residual history */
lis_esolver_output_rhistory(esolver,argv[4]);
lis_esolver_destroy(esolver);
lis_matrix_destroy(A);
lis_matrix_destroy(B);
lis_vector_destroy(x);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_MATRIX A,A0;
LIS_VECTOR b,x,v;
LIS_SCALAR ntimes,nmflops,nnrm2;
LIS_SCALAR *value;
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT nthreads, maxthreads;
LIS_INT gn,nnz,mode;
LIS_INT i,ii,j,jj,j0,j1,l,k,n,np,h,ih;
LIS_INT rn,rmin,rmax,rb;
LIS_INT is,ie,clsize,ci,*iw;
LIS_INT err,iter,matrix_type,s,ss,se;
LIS_INT *ptr,*index;
double mem,ra,rs,ri,ria,ca,time,time2,convtime,nnzs,nnzap,nnzt;
LIS_SCALAR val;
double commtime,comptime,flops;
FILE *file;
char path[1024];
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 3 )
{
if( my_rank==0 )
{
printf("Usage: %s n iter [matrix_type]\n", argv[0]);
}
CHKERR(1);
}
n = atoi(argv[1]);
iter = atoi(argv[2]);
if (argv[3] == NULL) {
s = 0;
}
else {
s = atoi(argv[3]);
}
if( n<=0 )
{
#ifdef _LONGLONG
if( my_rank==0 ) printf("n=%lld <=0\n",n);
#else
if( my_rank==0 ) printf("n=%d <=0\n",n);
#endif
CHKERR(1);
}
if( iter<=0 )
{
#ifdef _LONGLONG
if( my_rank==0 ) printf("iter=%lld <= 0\n",iter);
#else
if( my_rank==0 ) printf("iter=%d <= 0\n",iter);
#endif
CHKERR(1);
}
if( s<0 || s>11 )
{
#ifdef _LONGLONG
if( my_rank==0 ) printf("matrix_type=%lld < 0 or matrix_type=%lld > 11\n",s,s);
#else
if( my_rank==0 ) printf("matrix_type=%d < 0 or matrix_type=%d > 11\n",s,s);
#endif
CHKERR(1);
}
if( my_rank==0 )
{
printf("\n");
#ifdef _LONGLONG
printf("number of processes = %lld\n",nprocs);
#else
printf("number of processes = %d\n",nprocs);
#endif
}
#ifdef _OPENMP
nthreads = omp_get_num_procs();
maxthreads = omp_get_max_threads();
if( my_rank==0 )
{
#ifdef _LONGLONG
printf("max number of threads = %lld\n", nthreads);
printf("number of threads = %lld\n", maxthreads);
#else
printf("max number of threads = %d\n", nthreads);
printf("number of threads = %d\n", maxthreads);
#endif
}
#else
nthreads = 1;
maxthreads = 1;
#endif
/* create matrix and vectors */
lis_matrix_create(LIS_COMM_WORLD,&A0);
lis_matrix_set_size(A0,0,n);
lis_matrix_get_size(A0,&n,&gn);
lis_matrix_get_range(A0,&is,&ie);
k = 0;
for(i=is;i<ie;i++)
{
if( i>0 ) lis_matrix_set_value(LIS_INS_VALUE,i,i-1,-1.0,A0);
if( i<gn-1 ) lis_matrix_set_value(LIS_INS_VALUE,i,i+1,-1.0,A0);
lis_matrix_set_value(LIS_INS_VALUE,i,i,2.0,A0);
}
err = lis_matrix_assemble(A0);
CHKERR(err);
n = A0->n;
gn = A0->gn;
nnz = A0->nnz;
np = A0->np-n;
#ifdef USE_MPI
MPI_Allreduce(&nnz,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
nnzap = (double)i / (double)nprocs;
nnzt = ((double)nnz -nnzap)*((double)nnz -nnzap);
nnz = i;
MPI_Allreduce(&nnzt,&nnzs,1,MPI_DOUBLE,MPI_SUM,A0->comm);
nnzs = (nnzs / (double)nprocs)/nnzap;
MPI_Allreduce(&np,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
np = i;
#endif
if( my_rank==0 )
{
#ifdef _LONGLONG
printf("matrix size = %lld x %lld (%lld nonzero entries)\n",gn,gn,nnz);
printf("iteration count = %lld\n\n",iter);
#else
printf("matrix size = %d x %d (%d nonzero entries)\n",gn,gn,nnz);
printf("iteration count = %d\n\n",iter);
#endif
}
err = lis_vector_duplicate(A0,&x);
if( err ) CHKERR(err);
err = lis_vector_duplicate(A0,&b);
if( err ) CHKERR(err);
lis_matrix_get_range(A0,&is,&ie);
for(i=0;i<n;i++)
{
err = lis_vector_set_value(LIS_INS_VALUE,i+is,1.0,x);
}
/*
MPI version of VBR is not implemented.
DNS is also excluded to reduce memory usage.
*/
if (s==0)
{
ss = 1;
se = 11;
}
else
{
ss = s;
se = s+1;
}
for (matrix_type=ss;matrix_type<se;matrix_type++)
{
if ( nprocs>1 && matrix_type==9 ) continue;
lis_matrix_duplicate(A0,&A);
lis_matrix_set_type(A,matrix_type);
err = lis_matrix_convert(A0,A);
if( err ) CHKERR(err);
comptime = 0.0;
commtime = 0.0;
for(i=0;i<iter;i++)
{
#ifdef USE_MPI
MPI_Barrier(A->comm);
time = lis_wtime();
lis_send_recv(A->commtable,x->value);
commtime += lis_wtime() - time;
MPI_Barrier(A->comm);
#endif
time2 = lis_wtime();
lis_matvec(A,x,b);
comptime += lis_wtime() - time2;
}
lis_vector_nrm2(b,&val);
if( my_rank==0 )
{
flops = 2.0*nnz*iter*1.0e-6 / comptime;
#ifdef USE_MPI
#ifdef _LONG__DOUBLE
#ifdef _LONGLONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#endif
#else
#ifdef _LONGLONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#endif
#endif
#else
#ifdef _LONG__DOUBLE
#ifdef _LONGLONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#endif
#else
#ifdef _LONGLONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#endif
#endif
#endif
}
lis_matrix_destroy(A);
}
lis_matrix_destroy(A0);
lis_vector_destroy(b);
lis_vector_destroy(x);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_MATRIX A0,A,B;
LIS_VECTOR x,b,u;
LIS_SOLVER solver;
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT nsol,rhs,len,i,j,k,jj,kk,p,nrow_p,l,n;
LIS_INT err,iter,iter_double,iter_quad;
LIS_INT *iw,*nrow,*index,*ptr;
LIS_SCALAR *s,t,*value;
double times,itimes,ptimes,p_c_times,p_i_times;
LIS_REAL resid;
char solvername[128];
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 5 )
{
if( my_rank==0 )
{
printf("Usage: %s matrix_filename rhs_setting solution_filename residual_filename [options]\n", argv[0]);
}
CHKERR(1);
}
len = (LIS_INT)strlen(argv[2]);
if( len==1 )
{
if( argv[2][0]=='0' || argv[2][0]=='1' || argv[2][0]=='2' )
{
rhs = atoi(argv[2]);
}
else
{
rhs = -1;
}
}
else
{
rhs = -1;
}
if( my_rank==0 )
{
printf("\n");
#ifdef _LONGLONG
printf("number of processes = %lld\n",nprocs);
#else
printf("number of processes = %d\n",nprocs);
#endif
}
#ifdef _OPENMP
if( my_rank==0 )
{
#ifdef _LONGLONG
printf("max number of threads = %lld\n",omp_get_num_procs());
printf("number of threads = %lld\n",omp_get_max_threads());
#else
printf("max number of threads = %d\n",omp_get_num_procs());
printf("number of threads = %d\n",omp_get_max_threads());
#endif
}
#endif
/* read matrix and vectors from file */
err = lis_matrix_create(LIS_COMM_WORLD,&A); CHKERR(err);
err = lis_vector_create(LIS_COMM_WORLD,&b); CHKERR(err);
err = lis_vector_create(LIS_COMM_WORLD,&x); CHKERR(err);
err = lis_input(A,b,x,argv[1]);
CHKERR(err);
err = lis_matrix_duplicate(A,&A0);
CHKERR(err);
lis_matrix_set_type(A0,LIS_MATRIX_CSR);
err = lis_matrix_convert(A,A0);
CHKERR(err);
lis_matrix_destroy(A);
A = A0;
err = lis_vector_duplicate(A,&u);
CHKERR(err);
if( lis_vector_is_null(b) )
{
lis_vector_destroy(b);
lis_vector_duplicate(A,&b);
CHKERR(err);
if( rhs==0 )
{
CHKERR(1);
}
else if( rhs==1 )
{
err = lis_vector_set_all(1.0,b);
}
else
{
err = lis_vector_set_all(1.0,u);
lis_matvec(A,u,b);
}
}
if( rhs==-1 )
{
lis_input_vector(b,argv[2]);
}
if( lis_vector_is_null(x) )
{
lis_vector_destroy(x);
err = lis_vector_duplicate(A,&x);
CHKERR(err);
}
err = lis_solver_create(&solver); CHKERR(err);
lis_solver_set_option("-print mem",solver);
lis_solver_set_optionC(solver);
err = lis_solve(A,b,x,solver);
CHKERR(err);
lis_solver_get_itersex(solver,&iter,&iter_double,&iter_quad);
lis_solver_get_timeex(solver,×,&itimes,&ptimes,&p_c_times,&p_i_times);
lis_solver_get_residualnorm(solver,&resid);
lis_solver_get_solver(solver,&nsol);
lis_solver_get_solvername(nsol,solvername);
/* write results */
if( my_rank==0 )
{
#ifdef _LONGLONG
#ifdef _LONG__DOUBLE
printf("%s: number of iterations = %lld \n",solvername, iter);
#else
printf("%s: number of iterations = %lld (double = %lld, quad = %lld)\n",solvername,iter, iter_double, iter_quad);
#endif
#else
#ifdef _LONG__DOUBLE
printf("%s: number of iterations = %d \n",solvername, iter);
#else
printf("%s: number of iterations = %d (double = %d, quad = %d)\n",solvername,iter, iter_double, iter_quad);
#endif
#endif
printf("%s: elapsed time = %e sec.\n",solvername,times);
printf("%s: preconditioner = %e sec.\n",solvername, ptimes);
printf("%s: matrix creation = %e sec.\n",solvername, p_c_times);
printf("%s: linear solver = %e sec.\n",solvername, itimes);
#ifdef _LONG__DOUBLE
printf("%s: relative residual 2-norm = %Le\n\n",solvername,resid);
#else
printf("%s: relative residual 2-norm = %e\n\n",solvername,resid);
#endif
}
/* write solution */
lis_output_vector(x,LIS_FMT_MM,argv[3]);
/* write residual */
lis_solver_output_rhistory(solver, argv[4]);
lis_solver_destroy(solver);
lis_vector_destroy(x);
lis_vector_destroy(u);
lis_vector_destroy(b);
lis_matrix_destroy(A);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_MATRIX A,A0;
LIS_VECTOR b,x;
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT nthreads, maxthreads;
LIS_INT nnz;
LIS_INT i,n,np;
LIS_INT block;
LIS_INT is,ie;
LIS_INT err,iter,matrix_type;
double time,time2,nnzs,nnzap,nnzt;
LIS_SCALAR val;
double commtime,comptime,flops;
char path[1024];
FILE *file;
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 3 )
{
if( my_rank==0 )
{
printf("Usage: %s matrix_filename_list iter [block] \n", argv[0]);
}
lis_finalize();
exit(0);
}
file = fopen(argv[1], "r");
if( file==NULL ) CHKERR(1);
iter = atoi(argv[2]);
if (argv[3] == NULL) {
block = 2;
}
else {
block = atoi(argv[3]);
}
if( iter<=0 )
{
#ifdef _LONG__LONG
printf("iter=%lld <= 0\n",iter);
#else
printf("iter=%d <= 0\n",iter);
#endif
CHKERR(1);
}
if( my_rank==0 )
{
printf("\n");
#ifdef _LONG__LONG
printf("number of processes = %lld\n",nprocs);
#else
printf("number of processes = %d\n",nprocs);
#endif
}
#ifdef _OPENMP
if( my_rank==0 )
{
nthreads = omp_get_num_procs();
maxthreads = omp_get_max_threads();
#ifdef _LONG__LONG
printf("max number of threads = %lld\n", nthreads);
printf("number of threads = %lld\n", maxthreads);
#else
printf("max number of threads = %d\n", nthreads);
printf("number of threads = %d\n", maxthreads);
#endif
}
#else
nthreads = 1;
maxthreads = 1;
#endif
/* create matrix and vectors */
while( fscanf(file, "%s\n", path)==1 )
{
if( my_rank==0 )
{
printf("matrix_filename = %s\n", path);
}
lis_matrix_create(LIS_COMM_WORLD,&A0);
err = lis_input(A0,NULL,NULL,path);
if( err ) CHKERR(err);
n = A0->n;
nnz = A0->nnz;
np = A0->np-n;
#ifdef USE_MPI
MPI_Allreduce(&nnz,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
nnzap = (double)i / (double)nprocs;
nnzt = ((double)nnz -nnzap)*((double)nnz -nnzap);
nnz = i;
MPI_Allreduce(&nnzt,&nnzs,1,MPI_DOUBLE,MPI_SUM,A0->comm);
nnzs = (nnzs / (double)nprocs)/nnzap;
MPI_Allreduce(&np,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
np = i;
#endif
if( my_rank==0 )
{
#ifdef _LONG__LONG
printf("block size of BSR and BSC = %lld x %lld\n",block,block);
printf("number of iterations = %lld\n\n",iter);
#else
printf("block size of BSR and BSC = %d x %d\n",block,block);
printf("number of iterations = %d\n\n",iter);
#endif
}
err = lis_vector_duplicate(A0,&x);
if( err ) CHKERR(err);
err = lis_vector_duplicate(A0,&b);
if( err ) CHKERR(err);
lis_matrix_get_range(A0,&is,&ie);
for(i=0;i<n;i++)
{
err = lis_vector_set_value(LIS_INS_VALUE,i+is,1.0,x);
}
/*
MPI version of VBR is not implemented.
DNS is also excluded to reduce memory usage.
*/
for (matrix_type=1;matrix_type<11;matrix_type++)
{
if ( nprocs>1 && matrix_type==9 ) continue;
lis_matrix_duplicate(A0,&A);
lis_matrix_set_type(A,matrix_type);
err = lis_matrix_convert(A0,A);
if( err ) CHKERR(err);
if( my_rank==0 )
{
if( A->matrix_type==LIS_MATRIX_BSR || A->matrix_type==LIS_MATRIX_BSC )
{
A->bnr = block;
A->bnc = block;
}
}
comptime = 0.0;
commtime = 0.0;
for(i=0;i<iter;i++)
{
#ifdef USE_MPI
MPI_Barrier(A->comm);
time = lis_wtime();
lis_send_recv(A->commtable,x->value);
commtime += lis_wtime() - time;
#endif
time2 = lis_wtime();
lis_matvec(A,x,b);
comptime += lis_wtime() - time2;
}
lis_vector_nrm2(b,&val);
if( my_rank==0 )
{
flops = 2.0*nnz*iter*1.0e-6 / comptime;
#ifdef USE_MPI
#ifdef _LONG__DOUBLE
#ifdef _LONG__LONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#endif
#else
#ifdef _LONG__LONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
#endif
#endif
#else
#ifdef _LONG__DOUBLE
#ifdef _LONG__LONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %Le\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#endif
#else
#ifdef _LONG__LONG
printf("matrix_type = %2lld (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#else
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,val);
#endif
#endif
#endif
}
lis_matrix_destroy(A);
}
lis_matrix_destroy(A0);
lis_vector_destroy(b);
lis_vector_destroy(x);
}
fclose(file);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
int main ( int argc, char* argv[] )
{
/* parse command line arguments */
std::string anArg;
std::string modelRoot;
#if defined(USE_MPI) || defined(USE_MPI_PARPROC) || defined(USE_MPI_REGSOIL) || \
defined(USE_MPI_GEMS) || defined(USE_MPI_KRC)
int nb_ddc=0; //number of cores for DDC related processes
#endif
for( int i = 1; i < argc; i++ )
{
anArg = std::string( argv[i] );
if( anArg == "--help" || anArg == "-h")
{
std::cout << "Usage: ogs [MODEL_ROOT] [OPTIONS]\n"
<< "Where OPTIONS are:\n"
<< " -h [--help] print this message and exit\n"
<< " -b [--build-info] print build info and exit\n"
<< " --output-directory DIR put output files into DIR\n"
<< " --version print ogs version and exit" << "\n";
continue;
}
if( anArg == "--build-info" || anArg == "-b" )
{
std::cout << "ogs version: " << BuildInfo::OGS_VERSION << "\n"
<< "ogs date: " << BuildInfo::OGS_DATE << "\n";
std::cout << "git commit info: " << BuildInfo::GIT_COMMIT_INFO << "\n";
std::cout << "build timestamp: " << BuildInfo::BUILD_TIMESTAMP << "\n";
continue;
}
if( anArg == "--version" )
{
std::cout << BuildInfo::OGS_VERSION << "\n";
continue;
}
if( anArg == "--model-root" || anArg == "-m" )
{
if (i+1 >= argc) {
std::cerr << "Error: Parameter " << anArg << " needs an additional argument" << std::endl;
std::exit(EXIT_FAILURE);
}
modelRoot = std::string( argv[++i] );
continue;
}
if (anArg == "--output-directory")
{
if (i+1 >= argc) {
std::cerr << "Error: Parameter " << anArg << " needs an additional argument" << std::endl;
std::exit(EXIT_FAILURE);
}
std::string path = argv[++i];
if (! path.empty()) defaultOutputPath = path;
continue;
}
#if defined(USE_MPI) || defined(USE_MPI_PARPROC) || defined(USE_MPI_REGSOIL) || \
defined(USE_MPI_GEMS) || defined(USE_MPI_KRC)
std::string decompositions;
if( anArg == "--domain-decomposition" || anArg == "-ddc" )
{
decompositions = std::string( argv[++i] );
nb_ddc = atoi(decompositions.c_str());
continue;
}
#endif
// anything left over must be the model root, unless already found
if ( modelRoot == "" )
modelRoot = std::string( argv[i] );
} // end of parse argc loop
if( argc > 1 && modelRoot == "" ) // non-interactive mode and no model given
exit(0); // e.g. just wanted the build info
std::string solver_pkg_name = BuildInfo::SOLVER_PACKAGE_NAME;
// No default linear solver package is in use.
if(solver_pkg_name.find("Default") == std::string::npos)
{
std::cout << "\nWarning: " << solver_pkg_name
<< " other than the OGS default one is in use." <<std::endl;
std::cout << " The solver setting may need to be adjusted for the solution accuracy!" << std::endl;
}
char* dateiname(NULL);
#ifdef SUPERCOMPUTER
// *********************************************************************
// buffered output ... important for performance on cray
// (unbuffered output is limited to 10 bytes per second)
// [email protected] 11.10.2007
char buf[1024 * 1024];
int bsize;
bsize = 1024 * 1024; // question: what happens if buffer is full?
// according to documentation the buffer is flushed when full.
// If we have a lot of output, increasing buffer is usefull.
if(bsize > 0)
// bufstd = malloc(bsize);
setvbuf(stdout, buf, _IOFBF, bsize);
//**********************************************************************
#endif
/*---------- MPI Initialization ----------------------------------*/
#if defined(USE_MPI) || defined(USE_MPI_PARPROC) || defined(USE_MPI_REGSOIL) || \
defined(USE_MPI_GEMS) || defined(USE_MPI_KRC)
printf("Before MPI_Init\n");
#if defined(USE_MPI_GEMS)
int prov;
MPI_Init_thread(&argc,&argv,MPI_THREAD_FUNNELED, &prov);
#else
MPI_Init(&argc,&argv);
#endif
MPI_Barrier (MPI_COMM_WORLD); // 12.09.2007 WW
elapsed_time_mpi = -MPI_Wtime(); // 12.09.2007 WW
bool splitcomm_flag;
int np;
MPI_Comm_size(MPI_COMM_WORLD, &np);
splitcomm_flag = SplitMPI_Communicator::CreateCommunicator(MPI_COMM_WORLD, np, nb_ddc);
time_ele_paral = 0.0;
#endif
/*---------- MPI Initialization ----------------------------------*/
#ifdef USE_PETSC
int rank, r_size;
PetscLogDouble v1,v2;
char help[] = "OGS with PETSc \n";
//PetscInitialize(argc, argv, help);
PetscInitialize(&argc,&argv,(char *)0,help);
//kg44 quick fix to compile PETSC with version PETSCV3.4
#ifdef USEPETSC34
PetscTime(&v1);
#else
PetscGetTime(&v1);
#endif
MPI_Comm_rank(PETSC_COMM_WORLD, &rank);
MPI_Comm_size(PETSC_COMM_WORLD, &r_size);
PetscSynchronizedPrintf(PETSC_COMM_WORLD, "===\nUse PETSc solver");
PetscSynchronizedPrintf(PETSC_COMM_WORLD, "Number of CPUs: %d, rank: %d\n", r_size, rank);
#endif
/*---------- LIS solver -----------------------------------------*/
#ifdef LIS
//Initialization of the lis solver.
lis_initialize(&argc, &argv);
#endif
/*========================================================================*/
/* Kommunikation mit Betriebssystem */
/* Timer fuer Gesamtzeit starten */
#ifdef TESTTIME
TStartTimer(0);
#endif
/* Intro ausgeben */
#if defined(USE_MPI) //WW
if(myrank == 0)
#endif
#ifdef USE_PETSC
if(rank == 0 )
#endif
DisplayStartMsg();
/* Speicherverwaltung initialisieren */
if (!InitMemoryTest())
{
DisplayErrorMsg("Fehler: Speicherprotokoll kann nicht erstellt werden!");
DisplayErrorMsg(" Programm vorzeitig beendet!");
return 1; // LB changed from 0 to 1 because 0 is indicating success
}
if( argc == 1 ) // interactive mode
dateiname = ReadString();
else // non-interactive mode
{
if ( argc == 2 ) // a model root was supplied
{
dateiname = (char*) Malloc((int)strlen(argv[1]) + 1);
dateiname = strcpy(dateiname,argv[1]);
}
else // several args supplied
if( modelRoot != "")
{
dateiname = (char*) Malloc( (int) modelRoot.size() + 1 );
dateiname = strcpy( dateiname, modelRoot.c_str() );
}
DisplayMsgLn(dateiname);
}
//WW DisplayMsgLn("");
//WW DisplayMsgLn("");
// ----------23.02.2009. WW-----------------
// LB Check if file exists
std::string tmpFilename = dateiname;
tmpFilename.append(".pcs");
if(!IsFileExisting(tmpFilename))
{
std::cout << " Error: Cannot find file " << dateiname << "\n";
return 1;
}
// If no option is given, output files are placed in the same directory as the input files
if (defaultOutputPath.empty()) defaultOutputPath = pathDirname(std::string(dateiname));
FileName = dateiname;
size_t indexChWin, indexChLinux;
indexChWin = indexChLinux = 0;
indexChWin = FileName.find_last_of('\\');
indexChLinux = FileName.find_last_of('/');
//
if(indexChWin != std::string::npos)
FilePath = FileName.substr(0,indexChWin) + "\\";
else if(indexChLinux != std::string::npos)
FilePath = FileName.substr(0,indexChLinux) + "/";
// ---------------------------WW
Problem* aproblem = new Problem(dateiname);
#ifdef USE_PETSC
aproblem->setRankandSize(rank, r_size);
#endif
#if defined(USE_MPI) || defined(USE_MPI_PARPROC) || defined(USE_MPI_REGSOIL) || defined(USE_MPI_GEMS) || defined(USE_MPI_KRC)
aproblem->setRankandSize(myrank, mysize);
if (myrank != MPI_UNDEFINED)
{
#endif
aproblem->Euler_TimeDiscretize();
delete aproblem;
aproblem = NULL;
#if defined(USE_MPI) || defined(USE_MPI_PARPROC) || defined(USE_MPI_REGSOIL) || defined(USE_MPI_GEMS) || defined(USE_MPI_KRC)
}
//sending killing signals to ranks of group_IPQC, only when the group exists
if (splitcomm_flag == true){
int signal = -1, rank_IPQC, mysize_IPQC = np - nb_ddc;
for (int i=0; i< mysize_IPQC; i++){
rank_IPQC = mysize + i;
MPI_Send(&signal, 1, MPI_INT, rank_IPQC, 0, MPI_COMM_WORLD);
}
}
#endif
if(ClockTimeVec.size()>0)
ClockTimeVec[0]->PrintTimes(); //CB time
DestroyClockTime();
#ifdef TESTTIME
#if defined(USE_MPI)
if(myrank == 0)
#endif
#if defined(USE_PETSC)
if(rank == 0)
#endif
std::cout << "Simulation time: " << TGetTimer(0) << "s" << "\n";
#endif
/* Abspann ausgeben */
/*--------- MPI Finalize ------------------*/
#if defined(USE_MPI) || defined(USE_MPI_PARPROC) || defined(USE_MPI_REGSOIL) || defined(USE_MPI_KRC)
elapsed_time_mpi += MPI_Wtime(); // 12.09.2007 WW
std::cout << "\n *** Total CPU time of parallel modeling: " << elapsed_time_mpi <<
"\n"; //WW
// Count CPU time of post time loop WW
MPI_Finalize();
#endif
/*--------- MPI Finalize ------------------*/
/*--------- LIS Finalize ------------------*/
#ifdef LIS
lis_finalize();
#endif
/*--------- LIS Finalize ------------------*/
free(dateiname);
#ifdef USE_PETSC
//kg44 quick fix to compile PETSC with version PETSCV3.4
#ifdef USEPETSC34
PetscTime(&v2);
#else
PetscGetTime(&v2);
#endif
PetscPrintf(PETSC_COMM_WORLD,"\t\n>>Total elapsed time by using PETSC:%f s\n",v2-v1);
PetscFinalize();
#endif
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_MATRIX A,A0;
LIS_VECTOR b,x,v;
LIS_SCALAR ntimes,nmflops,nnrm2;
LIS_SCALAR *value;
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT nthreads, maxthreads;
LIS_INT gn,nnz,mode;
LIS_INT i,j,jj,j0,j1,l,k,n,np,h,ih;
LIS_INT m,nn,ii;
LIS_INT block;
LIS_INT rn,rmin,rmax,rb;
LIS_INT is,ie,clsize,ci,*iw;
LIS_INT err,iter,matrix_type;
LIS_INT *ptr,*index;
double mem,val,ra,rs,ri,ria,ca,time,time2,convtime,val2,nnzs,nnzap,nnzt;
double commtime,comptime,flops;
FILE *file;
char path[1024];
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 4 )
{
if( my_rank==0 ) printf("Usage: spmvtest5 matrix_filename matrix_type iter [block] \n");
lis_finalize();
exit(0);
}
file = fopen(argv[1], "r");
if( file==NULL ) CHKERR(1);
matrix_type = atoi(argv[2]);
iter = atoi(argv[3]);
if (argv[4] == NULL) {
block = 2;
}
else {
block = atoi(argv[4]);
}
if( matrix_type<1 || matrix_type>11 )
{
if( my_rank==0 ) printf("matrix_type=%d <1 or matrix_type=%d >11\n",matrix_type,matrix_type);
CHKERR(1);
}
if( iter<=0 )
{
if( my_rank==0 ) printf("iter=%d <= 0\n",iter);
CHKERR(1);
}
if( my_rank==0 )
{
printf("\n");
printf("number of processes = %d\n",nprocs);
}
#ifdef _OPENMP
if( my_rank==0 )
{
nthreads = omp_get_num_procs();
maxthreads = omp_get_max_threads();
printf("max number of threads = %d\n", nthreads);
printf("number of threads = %d\n", maxthreads);
}
#else
nthreads = 1;
maxthreads = 1;
#endif
/* create matrix and vectors */
lis_matrix_create(LIS_COMM_WORLD,&A0);
err = lis_input(A0,NULL,NULL,argv[1]);
CHKERR(err);
n = A0->n;
gn = A0->gn;
nnz = A0->nnz;
np = A0->np-n;
#ifdef USE_MPI
MPI_Allreduce(&nnz,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
nnzap = (double)i / (double)nprocs;
nnzt = ((double)nnz -nnzap)*((double)nnz -nnzap);
nnz = i;
MPI_Allreduce(&nnzt,&nnzs,1,MPI_DOUBLE,MPI_SUM,A0->comm);
nnzs = (nnzs / (double)nprocs)/nnzap;
MPI_Allreduce(&np,&i,1,LIS_MPI_INT,MPI_SUM,A0->comm);
np = i;
#endif
if( my_rank==0 )
{
printf("block size of BSR and BSC = %d x %d\n",block,block);
printf("iteration count = %d\n\n",iter);
}
err = lis_vector_duplicate(A0,&x);
if( err ) CHKERR(err);
err = lis_vector_duplicate(A0,&b);
if( err ) CHKERR(err);
lis_matrix_get_range(A0,&is,&ie);
for(i=0;i<n;i++)
{
err = lis_vector_set_value(LIS_INS_VALUE,i+is,1.0,x);
}
lis_matrix_duplicate(A0,&A);
lis_matrix_set_type(A,matrix_type);
err = lis_matrix_convert(A0,A);
if( err ) CHKERR(err);
if( A->matrix_type==LIS_MATRIX_BSR || A->matrix_type==LIS_MATRIX_BSC )
{
A->bnr = block;
A->bnc = block;
}
comptime = 0.0;
commtime = 0.0;
for(i=0;i<iter;i++)
{
#ifdef USE_MPI
MPI_Barrier(A->comm);
time = lis_wtime();
lis_send_recv(A->commtable,x->value);
commtime += lis_wtime() - time;
#endif
time2 = lis_wtime();
lis_matvec(A,x,b);
comptime += lis_wtime() - time2;
}
lis_vector_nrm2(b,&val);
if( my_rank==0 )
{
flops = 2.0*nnz*iter*1.0e-6 / comptime;
printf("matrix_type = %2d (%s), computation = %e sec, %8.3f MFLOPS, communication = %e sec, communication/computation = %3.3f %%, 2-norm = %e\n",matrix_type,lis_storagename2[matrix_type-1],comptime,flops,commtime,commtime/comptime*100,val);
}
lis_matrix_destroy(A);
lis_matrix_destroy(A0);
lis_vector_destroy(b);
lis_vector_destroy(x);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_MATRIX A;
LIS_VECTOR b,x;
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT format;
LIS_INT err;
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 4 )
{
err_print:
if( my_rank==0 )
{
printf("%s out_format out_matrix_filename in_matrix_filename [in_rhs_file in_init_file]\n", argv[0]);
}
CHKERR(1);
}
if( strncmp(argv[1], "mmb", 3)==0 )
{
format = LIS_FMT_MMB;
}
else if( strncmp(argv[1], "mm", 2)==0 )
{
format = LIS_FMT_MM;
}
else
{
goto err_print;
}
if( my_rank==0 )
{
printf("\n");
#ifdef _LONGLONG
printf("number of processes = %lld\n",nprocs);
#else
printf("number of processes = %d\n",nprocs);
#endif
}
#ifdef _OPENMP
if( my_rank==0 )
{
#ifdef _LONGLONG
printf("max number of threads = %lld\n",omp_get_num_procs());
printf("number of threads = %lld\n",omp_get_max_threads());
#else
printf("max number of threads = %d\n",omp_get_num_procs());
printf("number of threads = %d\n",omp_get_max_threads());
#endif
}
#endif
/* read matrix and vectors from file */
err = lis_matrix_create(LIS_COMM_WORLD,&A); CHKERR(err);
err = lis_vector_create(LIS_COMM_WORLD,&b); CHKERR(err);
err = lis_vector_create(LIS_COMM_WORLD,&x); CHKERR(err);
err = lis_input(A,b,x,argv[3]);
CHKERR(err);
if( argc>4 )
{
if( !lis_vector_is_null(b) )
{
lis_vector_destroy(b);
err = lis_vector_create(LIS_COMM_WORLD,&b); CHKERR(err);
}
err = lis_input_vector(b,argv[4]);
CHKERR(err);
if( A->n!=b->n )
{
#ifdef _LONGLONG
printf("different dimension: matrix A=%lld, vector b=%lld\n",A->n,b->n);
#else
printf("different dimension: matrix A=%d, vector b=%d\n",A->n,b->n);
#endif
goto err_to;
}
if( argc==6 )
{
if( !lis_vector_is_null(x) )
{
lis_vector_destroy(x);
err = lis_vector_create(LIS_COMM_WORLD,&x); CHKERR(err);
}
err = lis_input_vector(x,argv[5]);
CHKERR(err);
if( A->n!=x->n )
{
#ifdef _LONGLONG
printf("different dimension: matrix A=%lld, vector x=%lld\n",A->n,x->n);
#else
printf("different dimension: matrix A=%d, vector x=%d\n",A->n,x->n);
#endif
goto err_to;
}
}
}
err = lis_output(A,b,x,format,argv[2]);
CHKERR(err);
err_to:
lis_matrix_destroy(A);
lis_vector_destroy(b);
lis_vector_destroy(x);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_SCALAR *a,*q,*r;
LIS_INT m,n,nn;
LIS_INT i,j,ii,jj,nnz,qriter;
double time,time0;
LIS_REAL qrerr;
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
if( argc < 3 )
{
printf("Usage: %s m n\n", argv[0]);
CHKERR(1);
}
m = atoi(argv[1]);
n = atoi(argv[2]);
if( m<=0 || n<=0 )
{
printf("m=%d <=0 or n=%d <=0\n", m,n);
CHKERR(1);
}
printf("\n");
/* create arrays */
nn = m*n;
a = (LIS_SCALAR *)malloc(nn*nn*sizeof(LIS_SCALAR));
q = (LIS_SCALAR *)malloc(nn*nn*sizeof(LIS_SCALAR));
r = (LIS_SCALAR *)malloc(nn*nn*sizeof(LIS_SCALAR));
/* define two-dimensional Laplacian */
lis_array_set_all(nn*nn,(LIS_SCALAR)0.0,a);
nnz = 0;
for(ii=0;ii<nn;ii++)
{
i = ii/m;
j = ii - i*m;
if( i>0 ) { jj = ii - m; a[ii + jj * nn] = -1.0; nnz++;}
if( i<n-1 ) { jj = ii + m; a[ii + jj * nn] = -1.0; nnz++;}
if( j>0 ) { jj = ii - 1; a[ii + jj * nn] = -1.0; nnz++;}
if( j<m-1 ) { jj = ii + 1; a[ii + jj * nn] = -1.0; nnz++;}
jj = ii; a[ii + jj * nn] = 4.0; nnz++;
}
printf("matrix size = %d x %d (%d nonzero entries)\n\n", nn,nn,nnz);
/* solve eigenproblem */
time0 = lis_wtime();
lis_array_qr(nn,a,q,r,&qriter,&qrerr);
time = lis_wtime() - time0;
printf("QR : number of iterations = %d\n", qriter);
printf("QR : elapsed time = %e sec.\n", time);
printf("QR : eigensolver = %e sec.\n", time);
#ifdef _LONG__DOUBLE
printf("QR : 2-norm of A(2,1) = %Le\n\n", qrerr);
#else
printf("QR : 2-norm of A(2,1) = %e\n\n", qrerr);
#endif
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
int main ( int argc, char* argv[] )
{
/* parse command line arguments */
std::string anArg;
std::string modelRoot;
for( int i = 1; i < argc; i++ )
{
anArg = std::string( argv[i] );
if( anArg == "--help" || anArg == "-h")
{
std::cout << "Usage: ogs [MODEL_ROOT] [OPTIONS]\n"
<< "Where OPTIONS are:\n"
<< " -h [--help] print this message and exit\n"
<< " -b [--build-info] print build info and exit\n"
<< " --version print ogs version and exit" << "\n";
continue;
}
if( anArg == "--build-info" || anArg == "-b" )
{
std::cout << "ogs version: " << OGS_VERSION << "\n"
<< "ogs date: " << OGS_DATE << "\n";
#ifdef CMAKE_CMD_ARGS
std::cout << "cmake command line arguments: " << CMAKE_CMD_ARGS << "\n";
#endif // CMAKE_CMD_ARGS
#ifdef GIT_COMMIT_INFO
std::cout << "git commit info: " << GIT_COMMIT_INFO << "\n";
#endif // GIT_COMMIT_INFO
#ifdef SVN_REVISION
std::cout << "subversion info: " << SVN_REVISION << "\n";
#endif // SVN_REVISION
#ifdef BUILD_TIMESTAMP
std::cout << "build timestamp: " << BUILD_TIMESTAMP << "\n";
#endif // BUILD_TIMESTAMP
continue;
}
if( anArg == "--version" )
{
std::cout << OGS_VERSION << "\n";
continue;
}
if( anArg == "--model-root" || anArg == "-m" )
{
modelRoot = std::string( argv[++i] );
continue;
}
// anything left over must be the model root, unless already found
if ( modelRoot == "" )
modelRoot = std::string( argv[i] );
} // end of parse argc loop
if( argc > 1 && modelRoot == "" ) // non-interactive mode and no model given
exit(0); // e.g. just wanted the build info
char* dateiname(NULL);
#ifdef SUPERCOMPUTER
// *********************************************************************
// buffered output ... important for performance on cray
// (unbuffered output is limited to 10 bytes per second)
// [email protected] 11.10.2007
char buf[1024 * 1024];
int bsize;
bsize = 1024 * 1024; // question: what happens if buffer is full?
// according to documentation the buffer is flushed when full.
// If we have a lot of output, increasing buffer is usefull.
if(bsize > 0)
// bufstd = malloc(bsize);
setvbuf(stdout, buf, _IOFBF, bsize);
//**********************************************************************
#endif
/*---------- MPI Initialization ----------------------------------*/
#if defined(USE_MPI) || defined(USE_MPI_PARPROC) || defined(USE_MPI_REGSOIL) || \
defined(USE_MPI_GEMS) || defined(USE_MPI_KRC)
printf("Before MPI_Init\n");
#if defined(USE_MPI_GEMS)
int prov;
MPI_Init_thread(&argc,&argv,MPI_THREAD_FUNNELED, &prov);
#else
MPI_Init(&argc,&argv);
#endif
MPI_Barrier (MPI_COMM_WORLD); // 12.09.2007 WW
elapsed_time_mpi = -MPI_Wtime(); // 12.09.2007 WW
MPI_Comm_size(MPI_COMM_WORLD,&mysize);
MPI_Comm_rank(MPI_COMM_WORLD,&myrank);
std::cout << "After MPI_Init myrank = " << myrank << '\n';
time_ele_paral = 0.0;
#endif
/*---------- MPI Initialization ----------------------------------*/
#ifdef USE_PETSC
int rank, r_size;
PetscLogDouble v1,v2;
char help[] = "OGS with PETSc \n";
//PetscInitialize(argc, argv, help);
PetscInitialize(&argc,&argv,(char *)0,help);
//kg44 quick fix to compile PETSC with version PETSCV3.4
#ifdef USEPETSC34
PetscTime(&v1);
#else
PetscGetTime(&v1);
#endif
MPI_Comm_rank(PETSC_COMM_WORLD, &rank);
MPI_Comm_size(PETSC_COMM_WORLD, &r_size);
PetscSynchronizedPrintf(PETSC_COMM_WORLD, "===\nUse PETSc solver");
PetscSynchronizedPrintf(PETSC_COMM_WORLD, "Number of CPUs: %d, rank: %d\n", r_size, rank);
#endif
/*---------- LIS solver -----------------------------------------*/
#ifdef LIS
//Initialization of the lis solver.
lis_initialize(&argc, &argv);
#endif
/*========================================================================*/
/* Kommunikation mit Betriebssystem */
/* Timer fuer Gesamtzeit starten */
#ifdef TESTTIME
TStartTimer(0);
#endif
/* Intro ausgeben */
#if defined(USE_MPI) //WW
if(myrank == 0)
#endif
#ifdef USE_PETSC
if(rank == 0 )
#endif
DisplayStartMsg();
/* Speicherverwaltung initialisieren */
if (!InitMemoryTest())
{
DisplayErrorMsg("Fehler: Speicherprotokoll kann nicht erstellt werden!");
DisplayErrorMsg(" Programm vorzeitig beendet!");
return 1; // LB changed from 0 to 1 because 0 is indicating success
}
if( argc == 1 ) // interactive mode
dateiname = ReadString();
else // non-interactive mode
{
if ( argc == 2 ) // a model root was supplied
{
dateiname = (char*) Malloc((int)strlen(argv[1]) + 1);
dateiname = strcpy(dateiname,argv[1]);
}
else // several args supplied
if( modelRoot != "")
{
dateiname = (char*) Malloc( (int) modelRoot.size() + 1 );
dateiname = strcpy( dateiname, modelRoot.c_str() );
}
DisplayMsgLn(dateiname);
}
//WW DisplayMsgLn("");
//WW DisplayMsgLn("");
// ----------23.02.2009. WW-----------------
// LB Check if file exists
std::string tmpFilename = dateiname;
tmpFilename.append(".pcs");
if(!IsFileExisting(tmpFilename))
{
std::cout << " Error: Cannot find file " << dateiname << "\n";
return 1;
}
FileName = dateiname;
size_t indexChWin, indexChLinux;
indexChWin = indexChLinux = 0;
indexChWin = FileName.find_last_of('\\');
indexChLinux = FileName.find_last_of('/');
//
if(indexChWin != std::string::npos)
FilePath = FileName.substr(0,indexChWin) + "\\";
else if(indexChLinux != std::string::npos)
FilePath = FileName.substr(0,indexChLinux) + "/";
// ---------------------------WW
Problem* aproblem = new Problem(dateiname);
#ifdef USE_PETSC
aproblem->setRankandSize(rank, r_size);
#endif
#if defined(USE_MPI) || defined(USE_MPI_PARPROC) || defined(USE_MPI_REGSOIL) || defined(USE_MPI_GEMS) || defined(USE_MPI_KRC)
aproblem->setRankandSize(myrank, mysize);
#endif
aproblem->Euler_TimeDiscretize();
delete aproblem;
aproblem = NULL;
if(ClockTimeVec.size()>0)
ClockTimeVec[0]->PrintTimes(); //CB time
DestroyClockTime();
#ifdef TESTTIME
#if defined(USE_MPI)
if(myrank == 0)
#endif
#if defined(USE_PETSC)
if(rank == 0)
#endif
std::cout << "Simulation time: " << TGetTimer(0) << "s" << "\n";
#endif
/* Abspann ausgeben */
/*--------- MPI Finalize ------------------*/
#if defined(USE_MPI) || defined(USE_MPI_PARPROC) || defined(USE_MPI_REGSOIL) || defined(USE_MPI_KRC)
elapsed_time_mpi += MPI_Wtime(); // 12.09.2007 WW
std::cout << "\n *** Total CPU time of parallel modeling: " << elapsed_time_mpi <<
"\n"; //WW
// Count CPU time of post time loop WW
MPI_Finalize();
#endif
/*--------- MPI Finalize ------------------*/
/*--------- LIS Finalize ------------------*/
#ifdef LIS
lis_finalize();
#endif
/*--------- LIS Finalize ------------------*/
free(dateiname);
#ifdef USE_PETSC
//kg44 quick fix to compile PETSC with version PETSCV3.4
#ifdef USEPETSC34
PetscTime(&v2);
#else
PetscGetTime(&v2);
#endif
PetscPrintf(PETSC_COMM_WORLD,"\t\n>>Total elapsed time by using PETSC:%f s\n",v2-v1);
PetscFinalize();
#endif
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_INT nprocs,my_rank;
int int_nprocs,int_my_rank;
LIS_INT nsol;
LIS_MATRIX A,B;
LIS_VECTOR x,y,z,w;
LIS_SCALAR evalue0;
LIS_ESOLVER esolver;
LIS_REAL residual;
LIS_INT iter;
double time;
double itime,ptime,p_c_time,p_i_time;
char esolvername[128];
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
nprocs = int_nprocs;
my_rank = int_my_rank;
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 6 )
{
if( my_rank==0 )
{
printf("Usage: %s matrix_filename evalues_filename evectors_filename residuals_filename iters_filename [options]\n", argv[0]);
}
CHKERR(1);
}
if( my_rank==0 )
{
printf("\n");
printf("number of processes = %d\n",nprocs);
}
#ifdef _OPENMP
if( my_rank==0 )
{
printf("max number of threads = %d\n",omp_get_num_procs());
printf("number of threads = %d\n",omp_get_max_threads());
}
#endif
/* create matrix and vectors */
lis_matrix_create(LIS_COMM_WORLD,&A);
lis_input_matrix(A,argv[1]);
lis_vector_duplicate(A,&x);
lis_esolver_create(&esolver);
lis_esolver_set_option("-e si -ss 1 -eprint mem",esolver);
lis_esolver_set_optionC(esolver);
lis_esolve(A, x, &evalue0, esolver);
lis_esolver_get_esolver(esolver,&nsol);
lis_esolver_get_esolvername(nsol,esolvername);
lis_esolver_get_residualnorm(esolver, &residual);
lis_esolver_get_iter(esolver, &iter);
lis_esolver_get_timeex(esolver,&time,&itime,&ptime,&p_c_time,&p_i_time);
if( my_rank==0 ) {
printf("%s: mode number = %d\n", esolvername, 0);
#ifdef _LONG__DOUBLE
printf("%s: eigenvalue = %Le\n", esolvername, evalue0);
#else
printf("%s: eigenvalue = %e\n", esolvername, evalue0);
#endif
#ifdef _LONG__LONG
printf("%s: number of iterations = %lld\n",esolvername, iter);
#else
printf("%s: number of iterations = %d\n",esolvername, iter);
#endif
printf("%s: elapsed time = %e sec.\n", esolvername, time);
printf("%s: preconditioner = %e sec.\n", esolvername, ptime);
printf("%s: matrix creation = %e sec.\n", esolvername, p_c_time);
printf("%s: linear solver = %e sec.\n", esolvername, itime);
#ifdef _LONG__DOUBLE
printf("%s: relative residual = %Le\n\n",esolvername, residual);
#else
printf("%s: relative residual = %e\n\n",esolvername, residual);
#endif
}
lis_vector_create(LIS_COMM_WORLD,&y);
lis_vector_create(LIS_COMM_WORLD,&z);
lis_vector_create(LIS_COMM_WORLD,&w);
lis_matrix_create(LIS_COMM_WORLD,&B);
lis_esolver_get_evalues(esolver,y);
lis_esolver_get_residualnorms(esolver,z);
lis_esolver_get_iters(esolver,w);
lis_esolver_get_evectors(esolver,B);
/* write eigenvalues */
lis_output_vector(y,LIS_FMT_MM,argv[2]);
/* write eigenvectors */
lis_output_matrix(B,LIS_FMT_MM,argv[3]);
/* write residual norms */
lis_output_vector(z,LIS_FMT_MM,argv[4]);
/* write numbers of iterations */
lis_output_vector(w,LIS_FMT_MM,argv[5]);
lis_esolver_destroy(esolver);
lis_matrix_destroy(A);
lis_vector_destroy(x);
lis_matrix_destroy(B);
lis_vector_destroy(y);
lis_vector_destroy(z);
lis_vector_destroy(w);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
int main(int argc, char* argv[])
{
int err;
int nprocs,mtype,my_rank;
int nsol;
LIS_MATRIX A,A0;
LIS_VECTOR x;
LIS_REAL evalue0;
LIS_SCALAR shift, *tmpa;
LIS_ESOLVER esolver;
LIS_SOLVER solver;
LIS_REAL residual;
int iters;
double times;
double itimes,ptimes,p_c_times,p_i_times;
LIS_PRECON precon;
int *ptr,*index;
LIS_SCALAR *value;
int nsolver;
char esolvername[128];
int mode;
LIS_DEBUG_FUNC_IN;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&my_rank);
#else
nprocs = 1;
my_rank = 0;
#endif
if( argc < 4 )
{
if( my_rank==0 ) printf("Usage: etest1 matrix_filename solution_filename residual_filename [options]\n");
lis_finalize();
exit(0);
}
if( my_rank==0 )
{
printf("\n");
printf("number of processes = %d\n",nprocs);
}
#ifdef _OPENMP
if( my_rank==0 )
{
printf("max number of threads = %d\n",omp_get_num_procs());
printf("number of threads = %d\n",omp_get_max_threads());
}
#endif
/* create matrix and vectors */
lis_matrix_create(LIS_COMM_WORLD,&A);
lis_input_matrix(A,argv[1]);
lis_vector_duplicate(A,&x);
lis_esolver_create(&esolver);
lis_esolver_set_option("-eprint mem",esolver);
lis_esolver_set_optionC(esolver);
lis_esolve(A, x, &evalue0, esolver);
lis_esolver_get_esolver(esolver,&nsol);
lis_get_esolvername(nsol,esolvername);
lis_esolver_get_residualnorm(esolver, &residual);
lis_esolver_get_iters(esolver, &iters);
lis_esolver_get_timeex(esolver,×,&itimes,&ptimes,&p_c_times,&p_i_times);
if( my_rank==0 ) {
printf("%s: mode number = %d\n", esolvername, esolver->options[LIS_EOPTIONS_MODE]);
printf("%s: eigenvalue = %e\n", esolvername, evalue0);
printf("%s: number of iterations = %d\n",esolvername, iters);
printf("%s: elapsed time = %e sec.\n", esolvername, times);
printf("%s: preconditioner = %e sec.\n", esolvername, ptimes);
printf("%s: matrix creation = %e sec.\n", esolvername, p_c_times);
printf("%s: linear solver = %e sec.\n", esolvername, itimes);
printf("%s: relative residual 2-norm = %e\n\n",esolvername, residual);
}
/* write solution */
lis_output_vector(x,LIS_FMT_MM,argv[2]);
/* write residual */
lis_esolver_output_rhistory(esolver, argv[3]);
lis_esolver_destroy(esolver);
lis_matrix_destroy(A);
lis_vector_destroy(x);
lis_finalize();
LIS_DEBUG_FUNC_OUT;
return 0;
}
LIS_INT main(LIS_INT argc, char* argv[])
{
LIS_MATRIX A;
LIS_VECTOR b,x,u;
LIS_SOLVER solver;
LIS_INT my_rank;
#ifdef USE_MPI
int int_nprocs,int_my_rank;
#endif
LIS_INT err,i,n,gn,is,ie,iter;
n = 12;
lis_initialize(&argc, &argv);
#ifdef USE_MPI
MPI_Comm_size(MPI_COMM_WORLD,&int_nprocs);
MPI_Comm_rank(MPI_COMM_WORLD,&int_my_rank);
my_rank = int_my_rank;
#else
my_rank = 0;
#endif
lis_matrix_create(LIS_COMM_WORLD,&A);
err = lis_matrix_set_size(A,0,n);
CHKERR(err);
lis_matrix_get_size(A,&n,&gn);
lis_matrix_get_range(A,&is,&ie);
for(i=is;i<ie;i++)
{
if( i>0 ) lis_matrix_set_value(LIS_INS_VALUE,i,i-1,-1.0,A);
if( i<gn-1 ) lis_matrix_set_value(LIS_INS_VALUE,i,i+1,-1.0,A);
lis_matrix_set_value(LIS_INS_VALUE,i,i,2.0,A);
}
lis_matrix_set_type(A,LIS_MATRIX_CSR);
lis_matrix_assemble(A);
lis_vector_duplicate(A,&u);
lis_vector_duplicate(A,&b);
lis_vector_duplicate(A,&x);
lis_vector_set_all(1.0,u);
lis_matvec(A,u,b);
lis_solver_create(&solver);
lis_solver_set_option("-print mem",solver);
lis_solver_set_optionC(solver);
lis_solve(A,b,x,solver);
lis_solver_get_iter(solver,&iter);
if (my_rank==0)
{
#ifdef _LONG__LONG
printf("number of iterations = %lld\n",iter);
#else
printf("number of iterations = %d\n",iter);
#endif
printf("\n");
}
lis_vector_print(x);
lis_matrix_destroy(A);
lis_vector_destroy(b);
lis_vector_destroy(x);
lis_vector_destroy(u);
lis_solver_destroy(solver);
lis_finalize();
return 0;
}