/**
* SSH job: Popen
* If command is NULL, "/bin/sh" used as command.
*/
static pid_t
ngislSSHjobSSHpopen(
ngisSSHjob_t *job,
char *command,
ngisStandardIO_t* sio)
{
char *sshCommand = NULL;
pid_t ret = -1;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobSSHpopen";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(sio != NULL);
log = job->ngsj_log;
sshCommand = ngisSSHjobCreateSSHcommand(job, command);
if (sshCommand == NULL) {
ngisErrorPrint(log, fName, "Can't create SSH command.\n");
goto finalize;
}
ret = ngisPopen(sio, sshCommand);
if (ret < 0) {
ngisErrorPrint(log, fName, "Can't execute SSH command.\n");
goto finalize;
}
finalize:
NGIS_NULL_CHECK_AND_FREE(sshCommand);
return ret;
}
static int
ngislSSHjobDisable(
ngisSSHjob_t *job)
{
int result;
int ret = 1;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobDisable";
NGIS_ASSERT(job != NULL);
log = ((ngisJob_t *)job)->ngj_log;
/* Stop file transfer */
if (job->ngsj_fileTransfer != NULL) {
result = ngisSSHjobFileTransferDestroy(job->ngsj_fileTransfer);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't destroy file transfer.\n");
ret = 0;
}
}
NGIS_NULL_CHECK_AND_DESTROY(job->ngsj_timerCallback, ngisCallbackCancel);
NGIS_NULL_CHECK_AND_DESTROY(job->ngsj_stdinCallback, ngisCallbackCancel);
NGIS_NULL_CHECK_AND_FREE(job->ngsj_command);
NGIS_NULL_CHECK_AND_DESTROY(job->ngsj_lBufStdout, ngisLineBufferDestroy);
NGIS_NULL_CHECK_AND_DESTROY(job->ngsj_lBufStderr, ngisLineBufferDestroy);
result = ngisStandardIOclose(&job->ngsj_stdio);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't close the STDIO\n");
ret = 0;
}
/* Remove Script File */
#define NGISL_SSH_JOB_FILE_DESTROY(filename) do { \
char *scriptName = (filename); \
if (scriptName != NULL) { \
ngisDebugPrint(log, fName, "Unlink %s.\n", scriptName); \
result = unlink(scriptName); \
if (result < 0) { \
ngisErrorPrint(log, fName, \
"unlink(%s): %s", scriptName, strerror(errno)); \
ret = 0; \
} \
} \
NGIS_NULL_CHECK_AND_FREE(filename); \
}while (0)
NGISL_SSH_JOB_FILE_DESTROY(job->ngsj_localScriptNameForArrayJob);
NGISL_SSH_JOB_FILE_DESTROY(job->ngsj_localScriptName);
#undef NGISL_SSH_JOB_FILE_DESTROY
return ret;
}
int
ngisSSHjobPBSprepare(ngisSSHjob_t *job)
{
int result;
ngisLog_t *log;
static const char fName[] = "ngisSSHjobPBSprepare";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
/* Common? */
result = ngisSSHjobPrepareCommon(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't prepare.\n");
return 0;
}
result = ngisSSHjobFunctionPush(job, ngislSSHjobPBScreateScript);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register function for create PBS script.\n");
return 0;
}
result = ngisSSHjobFunctionPush(job, ngisSSHjobStagingScript);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register function for transfer PBS script.\n");
return 0;
}
if ((job->ngsj_attributes->ngsja_jobBackend == NGIS_BACKEND_NORMAL) &&
(job->ngsj_attributes->ngsja_count > 1)) {
/* For Array Job */
result = ngisSSHjobFunctionPush(job,
ngisSSHjobStagingScriptForArrayJob);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register function "
"for transfer SGE script for array job.\n");
return 0;
}
}
result = ngisSSHjobFunctionPush(job, ngislSSHjobPBSsubmitStart);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register function for transfer PBS script.\n");
return 0;
}
return 1;
}
static int
ngislSSHjobPBSqueryStatus(
ngisSSHjob_t *job)
{
ngisCallback_t callback;
int index;
ngisExecutable_t *exe;
ngisLog_t *log;
int result;
static const char fName[] = "ngislSSHjobPBSqueryStatus";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
while (job->ngsj_iExecutables < job->ngsj_nExecutables) {
index = job->ngsj_iExecutables;
exe = &job->ngsj_executables[index];
ngisDebugPrint(log, fName,
"Executable[%d] is %d\n", index, exe->nge_status);
if (exe->nge_status <= NGIS_EXECUTABLE_STATUS_ACTIVE) {
/* Check Status */
job->ngsj_nextReadCallback = ngislSSHjobPBSqueryStatusReadCallback;
callback = ngisCallbackWriteFormat(
job->ngsj_stdio.ngsio_in,
ngisSSHjobWriteStringCallback, job,
"%s -f %s | %s 'job_state';%s dummy\n",
job->ngsj_attributes->ngsja_sshStatusCommand,
exe->nge_identifier, NGIS_GREP_COMMAND, NGIS_ECHO_COMMAND);
if (!ngisCallbackIsValid(callback)) {
ngisErrorPrint(log, fName,
"Can't register function for sending"
" query status command string.\n");
return 0;
}
break;
}
job->ngsj_iExecutables++;
}
if (!(job->ngsj_iExecutables < job->ngsj_nExecutables)) {
ngisDebugPrint(log, fName, "Status checking has finished.\n");
job->ngsj_iExecutables = 0;
result = ngisSSHjobFinishQuery(job);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't finish to query the job status.\n");
return 0;
}
}
return 1;
}
/**
* SSH job: Query status
*/
static int
ngislSSHjobQueryStatus(
ngisSSHjob_t *job)
{
int index;
ngisExecutable_t *exe;
ngisCallback_t callback;
ngisLog_t *log = NULL;
int result;
static const char fName[] = "ngislSSHjobQueryStatus";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(job->ngsj_attributes != NULL);
log = job->ngsj_log;
ngisDebugPrint(log, fName, "Index is %d/%d\n",
job->ngsj_iExecutables, job->ngsj_nExecutables);
while (job->ngsj_iExecutables < job->ngsj_nExecutables) {
index = job->ngsj_iExecutables;
exe = &job->ngsj_executables[index];
ngisDebugPrint(log, fName, "Executable[%d] is %s\n",
index, ngislExecutableStatusString[exe->nge_status]);
if (exe->nge_status == NGIS_EXECUTABLE_STATUS_ACTIVE) {
/* Check Status */
job->ngsj_nextReadCallback = ngislSSHjobQueryStatusReadCallback;
callback = ngisCallbackWriteFormat(
job->ngsj_stdio.ngsio_in, ngisSSHjobWriteStringCallback, job,
"%s %s 2> %s && %s %s || %s %s\n",
NGIS_QUERY_COMMAND, exe->nge_identifier, NGIS_DEV_NULL,
NGIS_ECHO_COMMAND, NGIS_SSH_JOB_NONE,
NGIS_ECHO_COMMAND, NGIS_SSH_JOB_EXIT);
if (!ngisCallbackIsValid(callback)) {
ngisErrorPrint(log, fName,
"Can't write command invoking a executable.\n");
}
break;
}
job->ngsj_iExecutables++;
}
if (!(job->ngsj_iExecutables < job->ngsj_nExecutables)) {
ngisDebugPrint(log, fName, "Status checking has finished.\n");
result = ngisSSHjobFinishQuery(job);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't finish to query the job status.\n");
return 0;
}
}
return 1;
}
/**
* SSH Job: Callback function called when a line is read from standard error
*/
void
ngisSSHjobErrorCallback(
void *arg,
ngisLineBuffer_t *lineBuffer,
char *line,
ngisCallbackResult_t cResult)
{
ngisSSHjob_t *job = arg;
int result;
ngisLog_t *log = NULL;
static const char fName[] = "ngisSSHjobErrorCallback";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(lineBuffer != NULL);
NGIS_ASSERT(lineBuffer == job->ngsj_lBufStderr);
log = job->ngsj_log;
switch (cResult) {
case NGIS_CALLBACK_RESULT_EOF:
ngisDebugPrint(log, fName, "Called with EOF.\n");
goto error;
case NGIS_CALLBACK_RESULT_CANCEL:
ngisDebugPrint(log, fName, "Called because callback was canceled.\n");
return;
case NGIS_CALLBACK_RESULT_FAILED:
ngisErrorPrint(log, fName,
"Called because error occurred on reading from STDERR.\n");
goto error;
case NGIS_CALLBACK_RESULT_SUCCESS:
break;
default:
NGIS_ASSERT_NOTREACHED();
}
NGIS_ASSERT(line != NULL);
ngisErrorPrint(log, fName, "\"%s\".\n", line);
/* Next Line */
result = ngisLineBufferReadLine(lineBuffer, ngisSSHjobErrorCallback, job);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register callback for reading STDERR.\n");
goto error;
}
return;
error:
ngisLineBufferDestroy(job->ngsj_lBufStderr);
job->ngsj_lBufStderr = NULL;
return;
}
/**
* SSH job: done
*/
int
ngisSSHjobDone(
ngisSSHjob_t *job)
{
int i;
int result;
ngisLog_t *log;
ngisExecutable_t *exe = NULL;
static const char fName[] = "ngisSSHjobDone";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
ngisDebugPrint(log, fName, "called.\n");
for (i = 0;i < job->ngsj_nExecutables;++i) {
exe = &job->ngsj_executables[i];
switch (exe->nge_status) {
case NGIS_EXECUTABLE_STATUS_FAILED:
case NGIS_EXECUTABLE_STATUS_FAILED_STAGEOUT:
break;
default:
result = ngisSSHjobExecutableSetStatus(
job, exe, NGIS_EXECUTABLE_STATUS_DONE);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't set status.\n");
}
break;
}
}
if (((ngisJob_t *)job)->ngj_destroyRequested != 0) {
result = ngisJobDestroy((ngisJob_t *)job);
if (result == 0) {
ngisErrorPrint(NULL, fName, "Can't destroy the job.\n");
/* through */
}
job = NULL;
} else {
/* Disable */
result = ngislSSHjobDisable(job);
if (result == 0) {
ngisErrorPrint(NULL, fName, "Can't disable the job.\n");
/* through */
}
}
return 1;
}
static int
ngislSSHjobPBSsubmit(
ngisSSHjob_t *job)
{
ngisCallback_t callback;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobPBSsubmit";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
ngisDebugPrint(log, fName, "Called.\n");
job->ngsj_nextReadCallback = ngislSSHjobPBSsubmitReadCallback;
callback = ngisCallbackWriteFormat(
job->ngsj_stdio.ngsio_in, ngisSSHjobWriteStringCallback, job,
"%s %s || %s %s\n",
job->ngsj_attributes->ngsja_sshSubmitCommand,
job->ngsj_remoteScriptName,
NGIS_ECHO_COMMAND, NGIS_SSH_JOB_COMMAND_FAILED);
if (!ngisCallbackIsValid(callback)) {
ngisErrorPrint(log, fName,
"Can't register for sending submit command string.\n");
return 0;
}
job->ngsj_stdinCallback = callback;
return 1;
}
/**
* SSH job: Start status polling
*/
int
ngisSSHjobPollingStart(
ngisSSHjob_t *job)
{
int interval;
ngisCallback_t callback;
ngisLog_t *log;
static const char fName[] = "ngisSSHjobPollingStart";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
interval = job->ngsj_attributes->ngsja_statusPolling;
if (interval <= 0) {
interval = NGIS_SSH_JOB_DEFAULT_POLLING_TIME;
}
callback = ngisCallbackSetTimer(interval, ngisSSHjobPollingCallback, job);
if (!ngisCallbackIsValid(callback)) {
ngisErrorPrint(log, fName,
"Can't register callback for status polling.\n");
return 0;
}
job->ngsj_timerCallback = callback;
return 1;
}
/**
* SSH job: Execute SSH
*/
static pid_t
ngislSSHjobExecuteSSH(
ngisSSHjob_t *job)
{
pid_t pid = -1;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobExecuteSSH";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
pid = ngislSSHjobSSHpopen(job, NULL, &job->ngsj_stdio);
if (pid < 0) {
ngisErrorPrint(log, fName, "Can't execute SSH.\n");
return -1;
}
ngisDebugPrint(log, fName, "Child Process's STDIN is %d.\n",
job->ngsj_stdio.ngsio_in);
ngisDebugPrint(log, fName, "Child Process's STDOUT is %d.\n",
job->ngsj_stdio.ngsio_out);
ngisDebugPrint(log, fName, "Child Process's STDERR is %d.\n",
job->ngsj_stdio.ngsio_error);
return pid;
}
static int
ngislSSHjobPBSwriteScript(
ngisSSHjob_t *job,
FILE *fp)
{
ngisSSHjobAttributes_t *attr = NULL;
int result;
ngisLog_t *log = NULL;
static const char fName[] = "ngislSSHjobPBSwriteScript";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(fp != NULL);
attr = job->ngsj_attributes;
log = job->ngsj_log;
result = ngislSSHjobPBSwriteScriptHeader(job, fp);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't write script header.\n");
return 0;
}
switch (attr->ngsja_jobBackend) {
case NGIS_BACKEND_NORMAL:
if (attr->ngsja_count > 1) {
result = ngisSSHjobWriteArrayJobCommandToScript(
job, fp, NGISL_PBS_NODEFILE, attr->ngsja_sshPBSrsh);
} else {
result = ngisSSHjobWriteSingleJobCommandToScript(job, fp);
}
break;
case NGIS_BACKEND_MPI:
case NGIS_BACKEND_BLACS:
result = ngisSSHjobWriteMPICommandToScript(
job, fp, NGISL_PBS_NODEFILE);
break;
default:
result = 0;
NGIS_ASSERT_NOTREACHED();
}
if (result < 0) {
ngisErrorPrint(log, fName, "Can't print command string.\n");
return 0;
}
return 1;
}
static int
ngislSSHjobTransferStderr(ngisSSHjob_t *job)
{
int result;
static const char fName[] = "ngislSSHjobTransferStderr";
NGIS_ASSERT(job != NULL);
result = ngislSSHjobTransferStdouterr(job, NGIS_SSH_JOB_TRANSFER_STDERR);
if (result == 0) {
ngisErrorPrint(job->ngsj_log, fName, "Can't transfer STDERR.\n");
}
return result;
}
static int
ngislSSHjobPBSsubmitStart(
ngisSSHjob_t *job)
{
int result;
static const char fName[] = "ngislSSHjobPBSsubmitStart";
NGIS_ASSERT(job != NULL);
job->ngsj_iExecutables = 0;
result = ngisSSHjobSetStatus(job, NGIS_EXECUTABLE_STATUS_SUBMITTING);
if (result == 0) {
ngisErrorPrint(job->ngsj_log, fName,
"Can't start to submit the job.\n");
return 0;
}
return ngislSSHjobPBSsubmit(job);
}
static int
ngislSSHjobPBSwriteResource(
ngisSSHjob_t *job,
FILE *fp)
{
ngisSSHjobAttributes_t *attr;
int ppn;
int count;
int fraction;
int nNodes;
int result = -1;
static const char fName[] = "ngislSSHjobPBSwriteResource";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(fp != NULL);
attr = job->ngsj_attributes;
ppn = attr->ngsja_sshPBSprocessorsPerNode;
count = attr->ngsja_count;
fraction = count%ppn;
nNodes = count/ppn;
if ((nNodes > 0) && (fraction > 0)) {
result = fprintf(fp, "#PBS -l nodes=%d:ppn=%d+nodes=1:ppn=%d\n",
nNodes, ppn, fraction);
} else if (nNodes > 0) {
result = fprintf(fp, "#PBS -l nodes=%d:ppn=%d\n",
nNodes, ppn);
} else if (fraction > 0) {
result = fprintf(fp, "#PBS -l nodes=1:ppn=%d\n",
fraction);
} else {
NGIS_ASSERT_NOTREACHED();
}
if (result < 0) {
ngisErrorPrint(job->ngsj_log, fName,
"Can't print number of executable to scriptfile.\n");
return 0;
}
return 1;
}
/**
* SSH Job: Finalize
*/
static int
ngislSSHjobFinalize(
ngisJob_t *job)
{
int result;
int ret = 1;
ngisLog_t *log;
ngisSSHjob_t *sshJob = (ngisSSHjob_t *)job;
static const char fName[] = "ngislSSHjobFinalize";
NGIS_ASSERT(sshJob != NULL);
log = job->ngj_log;
result = ngislSSHjobDisable(sshJob);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't disable the SSH job.");
}
/* Destroy Executables */
if (sshJob->ngsj_executables != NULL) {
ngislExecutableDestroy(
sshJob->ngsj_executables, sshJob->ngsj_nExecutables);
sshJob->ngsj_executables = NULL;
}
NGIS_NULL_CHECK_AND_DESTROY(
sshJob->ngsj_attributes, ngisSSHjobAttributesDestroy);
NGIS_NULL_CHECK_AND_FREE(sshJob->ngsj_remoteExecutablePath);
NGIS_NULL_CHECK_AND_FREE(sshJob->ngsj_remoteTempdir);
NGIS_NULL_CHECK_AND_FREE(sshJob->ngsj_remoteTempdirBase);
NGIS_NULL_CHECK_AND_FREE(sshJob->ngsj_pidRemoteSh);
if (!NGIS_LIST_IS_INVALID_VALUE(&sshJob->ngsj_funcQueue)) {
NGIS_LIST_FINALIZE(ngisSSHjobFunc_t, &sshJob->ngsj_funcQueue);
}
ngislSSHjobInitializeMember(sshJob);
return ret;
}
/**
* SSH job: Finish to query the job status
*/
int
ngisSSHjobFinishQuery(
ngisSSHjob_t *job)
{
int result;
ngisLog_t *log = NULL;
static const char fName[] = "ngisSSHjobFinishQuery";
log = job->ngsj_log;
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(job->ngsj_statusChecking != 0);
job->ngsj_statusChecking = 0;
if (job->ngsj_cancelCalled != 0) {
result = ngisJobCancel((ngisJob_t *)job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't cancel the job.\n");
return 0;
}
}
return 1;
}
static void
ngislSSHjobPBSqueryStatusReadCallback(
void *arg,
ngisLineBuffer_t *lBuf,
char *line,
ngisCallbackResult_t cResult)
{
ngisSSHjob_t *job = arg;
int result;
int i;
ngisTokenAnalyzer_t tokenAnalyzer;
int tokenAnalyzerInitialized = 0;
char *status = NULL;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobPBSqueryStatusReadCallback";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(lBuf != NULL);
log = job->ngsj_log;
switch (cResult) {
case NGIS_CALLBACK_RESULT_EOF:
ngisErrorPrint(log, fName, "Unexcept EOF.\n");
goto error;
case NGIS_CALLBACK_RESULT_CANCEL:
ngisDebugPrint(log, fName,
"Callback is canceled.\n");
return;
case NGIS_CALLBACK_RESULT_FAILED:
ngisErrorPrint(log, fName,
"Can't read the reply.\n");
goto error;
case NGIS_CALLBACK_RESULT_SUCCESS:
break;
default:
NGIS_ASSERT_NOTREACHED();
}
/* Failed? */
if (strcmp(line, "dummy") == 0) {
/* Done */
job->ngsj_executables[0].nge_exitCode = 0;/* Success */
result = ngisSSHjobExecutableSetStatus(
job, &job->ngsj_executables[0],
NGIS_EXECUTABLE_STATUS_EXIT);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't set status.\n");
goto error;
}
result = ngisSSHjobProcessAfterExit(job);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't process after exit.\n");
goto error;
}
return;
}
ngisTokenAnalyzerInitialize(&tokenAnalyzer, line);
tokenAnalyzerInitialized = 0;
/* job_state = [STATUS] */
for (i = 0;i < 2;++i) {
result = ngisTokenAnalyzerNext(&tokenAnalyzer);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't get status.\n.");
goto error;
}
}
/* Get Status */
status = ngisTokenAnalyzerGetString(&tokenAnalyzer);
if (status == NULL) {
ngisErrorPrint(log, fName,
"Can't get status.\n");
goto error;
}
ngisDebugPrint(log, fName, "Status string is \"%s\".\n", status);
/* Check Status */
switch (*status) {
case 'Q':
case 'W':
case 'T':
break;
case 'B':
case 'E':
case 'R':
case 'X':
/* t(ransfering), r(unning) */
job->ngsj_executables[0].nge_status
= NGIS_EXECUTABLE_STATUS_ACTIVE;
break;
case 'H':
/* Do nothing */
break;
case 'S':
break;
case 'U':
default:
/* DONOTHING */;
}
free(status);
status = NULL;
ngisTokenAnalyzerFinalize(&tokenAnalyzer);
tokenAnalyzerInitialized = 0;
result = ngisLineBufferReadLine(job->ngsj_lBufStdout,
ngisSSHjobQueryStatusReadDummyCallback, job);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register the function for reading the line.\n");
goto error;
}
return;
error:
NGIS_NULL_CHECK_AND_FREE(status);
if (tokenAnalyzerInitialized != 0) {
ngisTokenAnalyzerFinalize(&tokenAnalyzer);
tokenAnalyzerInitialized = 0;
}
result = ngisSSHjobProcessAfterExit(job);
if (result == 0) {
ngisErrorPrint(NULL, fName, "The job isn't able to be done.\n");
}
return;
}
static void
ngislSSHjobPBSsubmitReadCallback(
void *arg,
ngisLineBuffer_t *lBuf,
char *line,
ngisCallbackResult_t cResult)
{
ngisSSHjob_t *job = arg;
int result;
char *jobID = NULL;
int nActive;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobPBSsubmitReadCallback";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(lBuf != NULL);
log = job->ngsj_log;
switch (cResult) {
case NGIS_CALLBACK_RESULT_CANCEL:
ngisDebugPrint(log, fName, "Callback is canceled.\n");
return;
case NGIS_CALLBACK_RESULT_EOF:
ngisErrorPrint(log, fName, "Unexcept EOF.\n");
goto error;
case NGIS_CALLBACK_RESULT_FAILED:
ngisErrorPrint(log, fName, "Can't read the reply.\n");
goto error;
case NGIS_CALLBACK_RESULT_SUCCESS:
break;
default:
NGIS_ASSERT_NOTREACHED();
}
/* Failed? */
if (strcmp(line, NGIS_SSH_JOB_COMMAND_FAILED) == 0) {
ngisErrorPrint(log, fName, "Can't submit the job.\n");
goto next;
}
ngisDebugPrint(log, fName, "Job ID = %s.\n", line);
jobID = strdup(line);
if (jobID == NULL) {
ngisErrorPrint(log, fName, "Can't copy the job ID.\n");
goto next;
}
next:
if (jobID != NULL) {
job->ngsj_executables[job->ngsj_iExecutables].nge_identifier = jobID;
jobID = NULL;
result = ngisSSHjobExecutableSetStatus(
job, &job->ngsj_executables[job->ngsj_iExecutables],
NGIS_EXECUTABLE_STATUS_PENDING);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't set status.\n");
goto next;
}
} else {
result = ngisSSHjobExecutableSetStatus(
job, &job->ngsj_executables[job->ngsj_iExecutables],
NGIS_EXECUTABLE_STATUS_FAILED);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't set status.\n");
}
}
job->ngsj_iExecutables++;
if (job->ngsj_iExecutables < job->ngsj_nExecutables) {
result = ngislSSHjobPBSsubmit(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't submit next job.\n");
goto error;
}
} else {
nActive = ngisSSHjobGetNexecutable(job, NGIS_EXECUTABLE_STATUS_PENDING);
if (nActive == 0) {
ngisErrorPrint(log, fName, "Can't execute all executables.\n");
goto error;
}
/* Polling Start */
result = ngisSSHjobPollingStart(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't start status polling.\n");
goto error;
}
}
return;
error:
NGIS_NULL_CHECK_AND_FREE(jobID);
result = ngisSSHjobProcessAfterExit(job);
if (result == 0) {
ngisErrorPrint(NULL, fName,
"The job isn't able to be done.\n");
}
return;
}
/**
* SSH Job: Initialize
*/
static int
ngislSSHjobInitialize(
ngisJob_t *job,
ngisOptionContainer_t *opts)
{
ngisSSHjob_t *sshJob = (ngisSSHjob_t *)job;
ngisSSHjobAttributes_t *attr = NULL;
char *jobID = NULL;
int result;
pid_t pid = -1;
ngisLog_t *log = NULL;
static const char fName[] = "ngislSSHjobInitialize";
NGIS_ASSERT(sshJob != NULL);
NGIS_ASSERT(opts != NULL);
log = job->ngj_log;
ngislSSHjobInitializeMember(sshJob);
/* Function Queue */
NGIS_LIST_INITIALIZE(ngisSSHjobFunc_t, &sshJob->ngsj_funcQueue);
/* Create SSH Job Attribute from Invoke Server Options */
attr = ngisSSHjobAttributesCreate(opts);
if (attr == NULL) {
ngisErrorPrint(log, fName, "Can't create SSH job attributes.\n");
goto error;
}
sshJob->ngsj_attributes = attr;
ngislSSHjobWarnIgnoredOptions(sshJob, opts);
/* Set JobManager*/
if ((attr->ngsja_jobManager == NULL) ||
(strcmp(attr->ngsja_jobManager, "jobmanager-fork") == 0)) {
sshJob->ngsj_jobManagerType = NGIS_SSH_JOB_MANAGER_NORMAL;
} else if (strcmp(attr->ngsja_jobManager, "jobmanager-sge") == 0) {
sshJob->ngsj_jobManagerType = NGIS_SSH_JOB_MANAGER_SGE;
} else if (strcmp(attr->ngsja_jobManager, "jobmanager-pbs") == 0) {
sshJob->ngsj_jobManagerType = NGIS_SSH_JOB_MANAGER_PBS;
} else {
ngisErrorPrint(log, fName, "Invalid job manager.\n");
goto error;
}
/* Number of the job of queuing system */
switch (attr->ngsja_jobBackend) {
case NGIS_BACKEND_NORMAL:
switch(sshJob->ngsj_jobManagerType) {
case NGIS_SSH_JOB_MANAGER_PBS:
case NGIS_SSH_JOB_MANAGER_SGE:
sshJob->ngsj_nExecutables = 1;
break;
case NGIS_SSH_JOB_MANAGER_NORMAL:
sshJob->ngsj_nExecutables = attr->ngsja_count;
break;
}
break;
case NGIS_BACKEND_MPI:
case NGIS_BACKEND_BLACS:
sshJob->ngsj_nExecutables = 1;
break;
default:
NGIS_ASSERT_NOTREACHED();
}
/* Create Executable Handle */
sshJob->ngsj_executables =
ngislExecutableCreate(sshJob->ngsj_nExecutables, log);
if (sshJob->ngsj_executables == NULL) {
ngisErrorPrint(log, fName, "Can't create the executables.\n");
goto error;
}
/* Execute SSH */
pid = ngislSSHjobExecuteSSH(sshJob);
if (pid < 0) {
ngisErrorPrint(log, fName, "Can't execute SSH.\n");
goto error;
}
/* Create Line Buffer */
sshJob->ngsj_lBufStdout =
ngisLineBufferCreate(sshJob->ngsj_stdio.ngsio_out, "\n");
if (sshJob->ngsj_lBufStdout == NULL) {
ngisErrorPrint(log, fName,
"Can't create line buffer for the STDOUT.\n");
goto error;
}
sshJob->ngsj_lBufStderr =
ngisLineBufferCreate(sshJob->ngsj_stdio.ngsio_error, "\n");
if (sshJob->ngsj_lBufStderr == NULL) {
ngisErrorPrint(log, fName,
"Can't create line buffer for the STDERR.\n");
goto error;
}
/* Register function for reading STDERR */
result = ngisLineBufferReadLine(
sshJob->ngsj_lBufStderr, ngisSSHjobErrorCallback, sshJob);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register callback for reading STDERR.\n");
goto error;
}
/* Prepare submitting the job */
switch (sshJob->ngsj_jobManagerType) {
case NGIS_SSH_JOB_MANAGER_NORMAL:
result = ngisSSHjobPrepare(sshJob);
break;
case NGIS_SSH_JOB_MANAGER_SGE:
result = ngisSSHjobSGEprepare(sshJob);
break;
case NGIS_SSH_JOB_MANAGER_PBS:
result = ngisSSHjobPBSprepare(sshJob);
break;
default:
NGIS_ASSERT_NOTREACHED();
}
if (result == 0) {
ngisErrorPrint(log, fName, "Can't prepare.\n");
goto error;
}
/* Job ID is process ID of SSH */
jobID = ngisStrdupPrintf("%ld", (long)pid);
if (jobID == NULL) {
ngisErrorPrint(log, fName, "Can't create Job ID.\n");
goto error;
}
result = ngisJobRegisterID(job, jobID);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register Job ID to protocol.\n");
goto error;
}
result = ngisSSHjobFunctionPop(sshJob);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't execute the next process.\n");
goto error;
}
NGIS_NULL_CHECK_AND_FREE(jobID);
return 1;
/* Error occurred */
error:
NGIS_NULL_CHECK_AND_FREE(jobID);
result = ngislSSHjobFinalize(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't finalize the ssh job.\n");
}
return 0;
}
static int
ngislSSHjobDoCancel(
ngisSSHjob_t* job)
{
ngisStringBuffer_t sBuf;
int sBufInitialized = 0;
char *command = NULL;
int i;
int ret = 1;
int nActive = 0;
int result;
ngisCallback_t callback;
ngisLog_t *log;
ngisExecutable_t *exe;
static const char fName[] = "ngislSSHjobDoCancel";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
nActive = ngisSSHjobGetNexecutable(job, NGIS_EXECUTABLE_STATUS_ACTIVE);
if (nActive == 0) {
/* There is no executable. */
goto finalize;
}
result = ngisStringBufferInitialize(&sBuf);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't initialize the string buffer.\n");
ret = 0;
goto finalize;
}
sBufInitialized = 1;
result = ngisStringBufferAppend(&sBuf, NGIS_KILL_COMMAND);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't append string to the string buffer.\n");
ret = 0;
goto finalize;
}
for (i = 0;i < job->ngsj_nExecutables;++i) {
exe = &job->ngsj_executables[i];
if (exe->nge_status == NGIS_EXECUTABLE_STATUS_ACTIVE) {
result = ngisStringBufferFormat(&sBuf, " %s", exe->nge_identifier);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't append string to the string buffer.\n");
ret = 0;
goto finalize;
}
}
}
result = ngisStringBufferAppend(&sBuf, "\n");
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't append string to the string buffer.\n");
ret = 0;
goto finalize;
}
command = ngisStringBufferRelease(&sBuf);
if (command == NULL) {
ngisErrorPrint(log, fName,
"Can't append string to the string buffer.\n");
ret = 0;
goto finalize;
}
callback = ngisCallbackWriteFormat(job->ngsj_stdio.ngsio_in,
ngisSSHjobCancelWriteCallback, job, "%s", command);
if (!ngisCallbackIsValid(callback)) {
ngisErrorPrint(log, fName,
"Can't register function for sending command string.\n");
ret = 0;
goto finalize;
}
job->ngsj_stdinCallback = callback;
finalize:
NGIS_NULL_CHECK_AND_FREE(command);
if (sBufInitialized != 0) {
ngisStringBufferFinalize(&sBuf);
sBufInitialized = 0;
}
return ret;
}
/**
* SSH Job: Cancel
*/
static int
ngislSSHjobCancel(
ngisJob_t* job)
{
ngisSSHjob_t *sshJob = (ngisSSHjob_t *)job;
int result = 0;
ngisExecutableStatus_t status;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobCancel";
NGIS_ASSERT(sshJob != NULL);
log = sshJob->ngsj_log;
ngisDebugPrint(log, fName, "called.\n");
sshJob->ngsj_cancelCalled = 0;
status = ngisSSHjobGetStatus(sshJob);
switch (status) {
case NGIS_EXECUTABLE_STATUS_UNSUBMITTED:
result = ngisSSHjobDone(sshJob);
if (result == 0) {
ngisErrorPrint(NULL, fName,
"The job isn't able to be done.\n");
}
break;
case NGIS_EXECUTABLE_STATUS_SUBMITTING:
ngisDebugPrint(log, fName, "Delayed cancel.\n");
sshJob->ngsj_cancelCalled = 1;
break;
case NGIS_EXECUTABLE_STATUS_PENDING:
case NGIS_EXECUTABLE_STATUS_ACTIVE:
if (sshJob->ngsj_statusChecking == 0) {
switch (sshJob->ngsj_jobManagerType) {
case NGIS_SSH_JOB_MANAGER_NORMAL:
result = ngislSSHjobDoCancel(sshJob);
break;
case NGIS_SSH_JOB_MANAGER_SGE:
result = ngisSSHjobSGEdoCancel(sshJob);
break;
case NGIS_SSH_JOB_MANAGER_PBS:
result = ngisSSHjobPBSdoCancel(sshJob);
break;
default:
NGIS_ASSERT_NOTREACHED();
}
if (result == 0) {
ngisErrorPrint(log, fName, "Can't cancel the job.\n");
return 0;
}
} else {
ngisDebugPrint(log, fName, "Delayed cancel.\n");
sshJob->ngsj_cancelCalled = 1;
}
break;
case NGIS_EXECUTABLE_STATUS_DONE:
case NGIS_EXECUTABLE_STATUS_FAILED:
case NGIS_EXECUTABLE_STATUS_STAGEOUT:
case NGIS_EXECUTABLE_STATUS_FAILED_STAGEOUT:
case NGIS_EXECUTABLE_STATUS_EXIT:
break;
}
return 1;
}
int
ngisSSHjobPBSdoCancel(
ngisSSHjob_t *job)
{
ngisStringBuffer_t sBuf;
int sBufInitialized = 0;
char *command = NULL;
int i;
int ret = 1;
int nExe = 0;
int result;
ngisCallback_t callback;
ngisLog_t *log;
static const char fName[] = "ngisSSHjobPBSdoCancel";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
nExe = ngisSSHjobGetNexecutable(job, NGIS_EXECUTABLE_STATUS_PENDING);
nExe += ngisSSHjobGetNexecutable(job, NGIS_EXECUTABLE_STATUS_ACTIVE);
if (nExe == 0) {
/* There is no executable. */
goto finalize;
}
result = ngisStringBufferInitialize(&sBuf);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't initialize the string buffer.\n");
ret = 0;
goto finalize;
}
sBufInitialized = 1;
result = ngisStringBufferAppend(&sBuf,
job->ngsj_attributes->ngsja_sshDeleteCommand);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't append string to the string buffer.\n");
ret = 0;
goto finalize;
}
for (i = 0;i < job->ngsj_nExecutables;++i) {
switch (job->ngsj_executables[i].nge_status) {
case NGIS_EXECUTABLE_STATUS_PENDING:
case NGIS_EXECUTABLE_STATUS_ACTIVE:
result = ngisStringBufferFormat(&sBuf,
" %s", job->ngsj_executables[i].nge_identifier);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't append string to the string buffer.\n");
ret = 0;
goto finalize;
}
break;
default:
break;
}
}
result = ngisStringBufferAppend(&sBuf, "\n");
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't append string to the string buffer.\n");
ret = 0;
goto finalize;
}
command = ngisStringBufferRelease(&sBuf);
if (command == NULL) {
ngisErrorPrint(log, fName,
"Can't release string from string buffer.\n");
ret = 0;
goto finalize;
}
callback = ngisCallbackWriteFormat(
job->ngsj_stdio.ngsio_in, ngisSSHjobCancelWriteCallback, job,
"%s", command);
if (!ngisCallbackIsValid(callback)) {
ngisErrorPrint(log, fName, "Can't send command string.\n");
ret = 0;
goto finalize;
}
job->ngsj_stdinCallback = callback;
finalize:
NGIS_NULL_CHECK_AND_FREE(command);
if (sBufInitialized != 0) {
ngisStringBufferFinalize(&sBuf);
sBufInitialized = 0;
}
return ret;
}
/**
* SSH job: Callback for polling
*/
void
ngisSSHjobPollingCallback(
void *arg,
ngisCallbackResult_t cResult)
{
ngisSSHjob_t *job = arg;
int result;
ngisLog_t *log;
static const char fName[] = "ngisSSHjobPollingCallback";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
job->ngsj_timerCallback = NULL;
ngisDebugPrint(log, fName, "Called.\n");
switch (cResult) {
case NGIS_CALLBACK_RESULT_SUCCESS:
break;
case NGIS_CALLBACK_RESULT_CANCEL:
ngisDebugPrint(log, fName, "Canceled.\n");
return;
case NGIS_CALLBACK_RESULT_FAILED:
ngisErrorPrint(log, fName, "Failed.\n");
goto error;
default:
NGIS_ASSERT_NOTREACHED();
}
/* Next */
result = ngisSSHjobPollingStart(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't continue status polling.\n");
goto error;
}
if (job->ngsj_statusChecking != 0) {
ngisWarningPrint(log, fName,
"Previous status checking still has not finished. "
"Skip checking of this time.\n");
/* DONOTHING */
return;
} else {
/* Check Start */
ngisSSHjobFunctionReset(job);
job->ngsj_statusChecking = 1;
job->ngsj_iExecutables = 0;
switch (job->ngsj_jobManagerType) {
case NGIS_SSH_JOB_MANAGER_NORMAL:
result = ngislSSHjobQueryStatus(job);
break;
case NGIS_SSH_JOB_MANAGER_SGE:
result = ngisSSHjobSGEqueryStatus(job);
break;
case NGIS_SSH_JOB_MANAGER_PBS:
result = ngisSSHjobPBSqueryStatus(job);
break;
default:
NGIS_ASSERT_NOTREACHED();
}
if (result == 0) {
ngisErrorPrint(log, fName, "Can't query status.\n");
goto error;
}
}
return;
error:
result = ngisSSHjobProcessAfterExit(job);
if (result == 0) {
ngisErrorPrint(NULL, fName, "The job isn't able to be done.\n");
}
return;
}
static int
ngislSSHjobPBSwriteScriptHeader(
ngisSSHjob_t *job,
FILE *fp)
{
int maxWallTime;
int maxCpuTime;
ngisSSHjobAttributes_t *attr;
int result;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobPBSwriteScriptHeader";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(fp != NULL);
attr = job->ngsj_attributes;
log = job->ngsj_log;
/* SHELL */
result = fprintf(fp,
"#! %s\n"
"#PBS -S %s\n",
attr->ngsja_sshRemoteSh,
attr->ngsja_sshRemoteSh);
if (result < 0) {
ngisErrorPrint(log, fName, "Can't print shell to scriptfile.\n");
return 0;
}
result = ngislSSHjobPBSwriteResource(job, fp);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't print required resources to scriptfile.\n");
return 0;
}
result = fprintf(fp,
"#PBS -e %s\n"
"#PBS -o %s\n",
NGIS_DEV_NULL, NGIS_DEV_NULL);
if (result < 0) {
ngisErrorPrint(log, fName, "Can't print output to scriptfile.\n");
return 0;
}
if (attr->ngsja_queueName != NULL) {
result = fprintf(fp, "#PBS -q %s\n", attr->ngsja_queueName);
if (result < 0) {
ngisErrorPrint(log, fName,
"Can't print queue name to scriptfile.\n");
return 0;
}
}
if (attr->ngsja_project != NULL) {
result = fprintf(fp, "#PBS -A %s\n", attr->ngsja_project);
if (result < 0) {
ngisErrorPrint(log, fName,
"Can't print project name to scriptfile.\n");
return 0;
}
}
/* Max Wall Time */
maxWallTime = 0;
if (attr->ngsja_maxWallTime > 0) {
maxWallTime = attr->ngsja_maxWallTime;
} else if (attr->ngsja_maxTime > 0) {
maxWallTime = attr->ngsja_maxTime;
}
if (maxWallTime > 0) {
result = fprintf(fp, "#PBS -l walltime=%d:00\n",
maxWallTime);
if (result < 0) {
ngisErrorPrint(log, fName,
"Can't print max wall time to scriptfile.\n");
return 0;
}
}
/* Max CPU Time */
maxCpuTime = 0;
if (attr->ngsja_maxCpuTime > 0) {
maxCpuTime = attr->ngsja_maxCpuTime;
} else if (attr->ngsja_maxTime > 0) {
maxCpuTime = attr->ngsja_maxTime;
}
if (maxCpuTime > 0) {
result = fprintf(fp, "#PBS -l pcput=%d:00\n",
maxCpuTime);
if (result < 0) {
ngisErrorPrint(log, fName,
"Can't print cpu wall time to scriptfile.\n");
return 0;
}
}
if (attr->ngsja_maxMemory > 0) {
result = fprintf(fp, "#PBS -l mem=%dmb\n",
attr->ngsja_maxMemory);
if (result < 0) {
ngisErrorPrint(log, fName,
"Can't print max memory to scriptfile.\n");
return 0;
}
}
result = fprintf(fp, "\n");
return 1;
}
static int
ngislSSHjobTransferStdouterr(
ngisSSHjob_t *job,
ngisSSHjobTransferTarget_t targetType)
{
ngisSSHjobFileTransfer_t *fileTransfer = NULL;
int ret = 1;
int result;
char *remoteFileName = NULL;
char *localFileName = NULL;
char *remoteFileNameFormat = NULL;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobTransferStdouterr";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
switch (targetType) {
case NGIS_SSH_JOB_TRANSFER_STDOUT:
remoteFileNameFormat = "%s/stdout.*";
localFileName = job->ngsj_attributes->ngsja_stdoutFile;
break;
case NGIS_SSH_JOB_TRANSFER_STDERR:
remoteFileNameFormat = "%s/stderr.*";
localFileName = job->ngsj_attributes->ngsja_stderrFile;
break;
default:
NGIS_ASSERT_NOTREACHED();
}
remoteFileName = ngisStrdupPrintf(
remoteFileNameFormat, job->ngsj_remoteTempdir);
if (remoteFileName == NULL) {
ngisErrorPrint(log, fName,
"Can't copy string of temporary filename.\n");
ret = 0;
goto finalize;
}
fileTransfer = ngisSSHjobFileTransferCreate(
job, localFileName, remoteFileName,
NGIS_SSH_JOB_FILE_TRANSFER_REMOTE_TO_LOCAL);
if (fileTransfer == NULL) {
ngisErrorPrint(log, fName, "Can't create file transfer.\n");
ret = 0;
goto finalize;
}
result = ngisSSHjobFileTransferStart(fileTransfer);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't start file transfer.\n");
ret = 0;
goto finalize;
}
finalize:
NGIS_NULL_CHECK_AND_FREE(remoteFileName);
if ((ret == 0) && (fileTransfer != NULL)) {
result = ngisSSHjobFileTransferDestroy(fileTransfer);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't destroy file transfer.\n");
}
}
return ret;
}
/**
* SSH job: Callback function for "Query exit status"
*/
static void
ngislSSHjobExecutableDoneReadCallback(
void *arg,
ngisLineBuffer_t *lBuf,
char *line,
ngisCallbackResult_t cResult)
{
ngisSSHjob_t *job = arg;
int exitStatus;
int result;
int nExit;
ngisLog_t *log;
ngisTokenAnalyzer_t tokenAnalyzer;
int tokenAnalyzerInitialized = 0;
ngisExecutable_t *exe = NULL;
static const char fName[] = "ngislSSHjobExecutableDoneReadCallback";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(lBuf != NULL);
log = job->ngsj_log;
ngisDebugPrint(log, fName, "Called.\n");
switch (cResult) {
case NGIS_CALLBACK_RESULT_EOF:
ngisErrorPrint(log, fName, "Unexcept EOF.\n");
goto error;
case NGIS_CALLBACK_RESULT_CANCEL:
ngisDebugPrint(log, fName, "Callback is canceled.\n");
return;
case NGIS_CALLBACK_RESULT_FAILED:
ngisDebugPrint(log, fName, "Can't read the reply.\n");
goto error;
case NGIS_CALLBACK_RESULT_SUCCESS:
break;
default:
NGIS_ASSERT_NOTREACHED();
}
NGIS_ASSERT(line != NULL);
ngisTokenAnalyzerInitialize(&tokenAnalyzer, line);
tokenAnalyzerInitialized = 1;
/* Get Exit Status */
result = ngisTokenAnalyzerGetInt(&tokenAnalyzer, &exitStatus);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't get exit status.\n");
goto error;
}
/* Check End */
result = ngisTokenAnalyzerNext(&tokenAnalyzer);
if (result != 0) {
ngisErrorPrint(log, fName, "Unnecessary token.\n.");
goto error;
}
tokenAnalyzerInitialized = 0;
ngisTokenAnalyzerFinalize(&tokenAnalyzer);
ngisDebugPrint(log, fName, "Exit status is \"%d\".\n", exitStatus);
/* Set status */
exe = &job->ngsj_executables[job->ngsj_iExecutables];
exe->nge_exitCode = exitStatus;
result = ngisSSHjobExecutableSetStatus(
job, exe, NGIS_EXECUTABLE_STATUS_EXIT);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't set status.\n");
goto error;
}
nExit = ngisSSHjobGetNexecutable(job, NGIS_EXECUTABLE_STATUS_EXIT);
if (nExit >= job->ngsj_nExecutables) {
ngisDebugPrint(log, fName, "All Executable exit.\n");
result = ngisSSHjobProcessAfterExit(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't process after exit.\n");
goto error;
}
} else {
ngisDebugPrint(log, fName, "Check status of the next executable.\n");
job->ngsj_iExecutables++;
result = ngislSSHjobQueryStatus(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't query status.\n");
goto error;
}
}
return;
error:
if (tokenAnalyzerInitialized != 0) {
tokenAnalyzerInitialized = 0;
ngisTokenAnalyzerFinalize(&tokenAnalyzer);
}
result = ngisSSHjobProcessAfterExit(job);
if (result == 0) {
ngisErrorPrint(NULL, fName,
"The job isn't able to be done.\n");
}
return;
}
int
main(int argc, char *argv[])
{
int result;
char *logFileName = NGIS_DEV_NULL;
int invokeServerInitialized = 0;
int exitCode = 0;/* Success */
int opt;
struct sigaction sa;
int debug = 0;
int i;
static const int ignoreSignals[] = {
SIGPIPE,
SIGINT,
SIGTSTP,
};
static const char fName[] = "main";
/* Options analyze */
while ((opt = getopt(argc, argv, "l:d")) >= 0) {
switch (opt) {
case 'l':
/* LOG */
logFileName = optarg;
break;
case 'd':
debug = 1;
break;
case '?':
default:
/* Ignore arguments */
;
}
}
result = ngisLogInitializeModule(logFileName, NGIS_LOG_LEVEL_DEBUG);
if (result == 0) {
return 1;
}
ngisDebugPrint(NULL, fName, "#========================================#\n");
ngisDebugPrint(NULL, fName, "# Invoke Server SSH Started #\n");
ngisDebugPrint(NULL, fName, "#========================================#\n");
/* Signal */
sa.sa_flags = 0;
sa.sa_handler = SIG_IGN;
result = sigemptyset(&sa.sa_mask);
if (result < 0) {
ngisErrorPrint(NULL, fName, "sigemptyset: %s\n", strerror(errno));
exitCode = 1;
goto finalize;
}
for (i = 0;i < NGIS_NELEMENTS(ignoreSignals);++i) {
result = sigaction(ignoreSignals[i], &sa, NULL);
if (result < 0) {
ngisErrorPrint(NULL, fName, "sigaction: %s\n", strerror(errno));
exitCode = 1;
goto finalize;
}
}
/* Invoke Server */
result = ngInvokeServerInitialize(&ngislSSHjobTypeInformation);
if (result == 0) {
ngisErrorPrint(NULL, fName, "Can't Initialize Invoke Server.\n");
exitCode = 1;
goto finalize;
}
invokeServerInitialized = 1;
result = ngInvokeServerRun();
if (result == 0) {
ngisErrorPrint(NULL, fName, "Invoke Server can't run.\n");
exitCode = 1;
goto finalize;
}
finalize:
if (invokeServerInitialized != 0) {
result = ngInvokeServerFinalize();
if (result == 0) {
ngisErrorPrint(NULL, fName, "Can't finalize Invoke Server.\n");
exitCode = 1;
}
}
ngisDebugPrint(NULL, fName, "#========================================#\n");
ngisDebugPrint(NULL, fName, "# Invoke Server SSH Exit #\n");
ngisDebugPrint(NULL, fName, "#========================================#\n");
ngisLogFinalizeModule();
/* Ignore result */
return 0;
}
static void
ngislSSHjobQueryStatusReadCallback(
void *arg,
ngisLineBuffer_t *lBuf,
char *line,
ngisCallbackResult_t cResult)
{
ngisSSHjob_t *job = arg;
ngisCallback_t callback;
int result;
char *command;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobQueryStatusReadCallback";
NGIS_ASSERT(job != NULL);
NGIS_ASSERT(lBuf != NULL);
log = job->ngsj_log;
ngisDebugPrint(log, fName, "Called.\n");
switch (cResult) {
case NGIS_CALLBACK_RESULT_EOF:
ngisErrorPrint(log, fName, "Unexcept EOF.\n");
goto error;
case NGIS_CALLBACK_RESULT_CANCEL:
ngisDebugPrint(log, fName, "Callback is canceled.\n");
return;
case NGIS_CALLBACK_RESULT_FAILED:
ngisDebugPrint(log, fName, "Can't read the data.\n");
goto error;
case NGIS_CALLBACK_RESULT_SUCCESS:
break;
default:
NGIS_ASSERT_NOTREACHED();
}
if (strcmp(line, NGIS_SSH_JOB_NONE) == 0) {
/* Check next executable */
job->ngsj_iExecutables++;
result = ngislSSHjobQueryStatus(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't query the status.\n");
goto error;
}
} else if (strcmp(line, NGIS_SSH_JOB_EXIT) == 0) {
/* Wait the child process and get exit status */
job->ngsj_nextReadCallback = ngislSSHjobExecutableDoneReadCallback;
callback = ngisCallbackWriteFormat(
job->ngsj_stdio.ngsio_in, ngisSSHjobWriteStringCallback, job,
"wait %s;%s $?\n",
job->ngsj_executables[job->ngsj_iExecutables].nge_identifier,
NGIS_ECHO_COMMAND);
if (!ngisCallbackIsValid(callback)) {
ngisErrorPrint(log, fName,
"Can't write command getting exit code.\n");
goto error;
}
command = NULL;
} else {
NGIS_ASSERT_NOTREACHED();
}
return;
error:
result = ngisSSHjobProcessAfterExit(job);
if (result == 0) {
ngisErrorPrint(NULL, fName,
"The job isn't able to be done.\n");
}
return;
}
static int
ngislSSHjobPBScreateScript(
ngisSSHjob_t *job)
{
char *filename = NULL;
FILE *fp = NULL;
int result;
int ret = 1;
ngisLog_t *log;
static const char fName[] = "ngislSSHjobPBScreateScript";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
if ((job->ngsj_attributes->ngsja_jobBackend == NGIS_BACKEND_NORMAL) &&
(job->ngsj_attributes->ngsja_count > 1)) {
/* For Array Job */
result = ngisSSHjobCreateScriptForArrayJob(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't create script for array job.\n");
ret = 0;
goto finalize;
}
}
filename = ngisMakeTempFile(job->ngsj_attributes->ngsja_tmpDir);
if (filename == NULL) {
ngisErrorPrint(log, fName, "Can't make temporary file.\n");
ret = 0;
goto finalize;
}
job->ngsj_localScriptName = filename;
fp = fopen(filename, "w");
if (fp == NULL) {
ngisErrorPrint(log, fName, "Can't create FILE structure.\n");
ret = 0;
goto finalize;
}
result = ngislSSHjobPBSwriteScript(job, fp);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't write script to file.\n");
ret = 0;
goto finalize;
}
finalize:
/* Close */
if (fp != NULL) {
result = fclose(fp);
if (result != 0) {
ngisErrorPrint(log, fName, "fclose: %s.\n", strerror(errno));
ret = 0;
}
fp = NULL;
}
ngisLogDumpFile(log, NGIS_LOG_LEVEL_DEBUG,
fName, job->ngsj_localScriptName);
if (ret != 0) {
result = ngisSSHjobFunctionPop(job);
if (result == 0) {
ngisErrorPrint(log, fName, "Can't execute the next process.\n");
ret = 0;
}
}
return ret;
}
int
ngisSSHjobProcessAfterExit(
ngisSSHjob_t *job)
{
int result;
ngisLog_t *log = NULL;
int i;
ngisExecutable_t *exe = NULL;
ngisExecutableStatus_t jobStatus;
static const char fName[] = "ngisSSHjobProcessAfterExit";
NGIS_ASSERT(job != NULL);
log = job->ngsj_log;
jobStatus = ngisSSHjobGetStatus(job);
ngisSSHjobFunctionReset(job);
job->ngsj_iExecutables = 0;
/* Stop polling */
if (ngisCallbackIsValid(job->ngsj_timerCallback)) {
ngisCallbackCancel(job->ngsj_timerCallback);
job->ngsj_timerCallback = NULL;
}
if (job->ngsj_afterExit != 0) {
goto error;
}
job->ngsj_afterExit = 1;
if ((job->ngsj_attributes->ngsja_redirectEnable != 0) &&
(jobStatus > NGIS_EXECUTABLE_STATUS_SUBMITTING) &&
(jobStatus < NGIS_EXECUTABLE_STATUS_STAGEOUT)) {
for (i = 0;i < job->ngsj_nExecutables;++i) {
exe = &job->ngsj_executables[i];
if (exe->nge_status == NGIS_EXECUTABLE_STATUS_FAILED) {
result = ngisSSHjobExecutableSetStatus(
job, exe, NGIS_EXECUTABLE_STATUS_FAILED_STAGEOUT);
} else {
result = ngisSSHjobExecutableSetStatus(
job, exe, NGIS_EXECUTABLE_STATUS_STAGEOUT);
}
if (result == 0) {
ngisErrorPrint(log, fName, "Can't set status.\n");
goto error;
}
}
/* Redirect outerr */
result = ngisSSHjobFunctionPush(job, ngislSSHjobTransferStdout);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register the function for transfer STDOUT.\n");
goto error;
}
result = ngisSSHjobFunctionPush(job, ngislSSHjobTransferStderr);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register the function for transfer STDERR.\n");
goto error;
}
}
result = ngisSSHjobFunctionPush(job, ngisSSHjobDone);
if (result == 0) {
ngisErrorPrint(log, fName,
"Can't register the function for transfer job done.\n");
goto error;
}
result = ngisSSHjobFunctionPop(job);
if (result == 0) {
ngisErrorPrint(NULL, fName,
"Fails the registered function.\n");
return 0;
}
return 1;
error:
result = ngisSSHjobDone(job);
if (result == 0) {
ngisErrorPrint(NULL, fName, "Can't done the job.\n");
}
return 0;
}
