void oskar_vis_block_write_ms(const oskar_VisBlock* blk,
const oskar_VisHeader* header, oskar_MeasurementSet* ms, int* status)
{
const oskar_Mem *in_acorr, *in_xcorr, *in_uu, *in_vv, *in_ww;
oskar_Mem *temp_vis = 0, *temp_uu = 0, *temp_vv = 0, *temp_ww = 0;
double exposure_sec, interval_sec, t_start_mjd, t_start_sec;
double ra_rad, dec_rad, ref_freq_hz;
unsigned int a1, a2, num_baseln_in, num_baseln_out, num_channels;
unsigned int num_pols_in, num_pols_out, num_stations, num_times, b, c, t;
unsigned int i, i_out, prec, start_time_index, start_chan_index;
unsigned int have_autocorr, have_crosscorr;
const void *xcorr, *acorr;
void* out;
/* Check if safe to proceed. */
if (*status) return;
/* Pull data from visibility structures. */
num_pols_out = oskar_ms_num_pols(ms);
num_pols_in = oskar_vis_block_num_pols(blk);
num_stations = oskar_vis_block_num_stations(blk);
num_baseln_in = oskar_vis_block_num_baselines(blk);
num_channels = oskar_vis_block_num_channels(blk);
num_times = oskar_vis_block_num_times(blk);
in_acorr = oskar_vis_block_auto_correlations_const(blk);
in_xcorr = oskar_vis_block_cross_correlations_const(blk);
in_uu = oskar_vis_block_baseline_uu_metres_const(blk);
in_vv = oskar_vis_block_baseline_vv_metres_const(blk);
in_ww = oskar_vis_block_baseline_ww_metres_const(blk);
have_autocorr = oskar_vis_block_has_auto_correlations(blk);
have_crosscorr = oskar_vis_block_has_cross_correlations(blk);
start_time_index = oskar_vis_block_start_time_index(blk);
start_chan_index = oskar_vis_block_start_channel_index(blk);
ra_rad = oskar_vis_header_phase_centre_ra_deg(header) * D2R;
dec_rad = oskar_vis_header_phase_centre_dec_deg(header) * D2R;
exposure_sec = oskar_vis_header_time_average_sec(header);
interval_sec = oskar_vis_header_time_inc_sec(header);
t_start_mjd = oskar_vis_header_time_start_mjd_utc(header);
ref_freq_hz = oskar_vis_header_freq_start_hz(header);
prec = oskar_mem_precision(in_xcorr);
t_start_sec = t_start_mjd * 86400.0 +
interval_sec * (start_time_index + 0.5);
/* Check that there is something to write. */
if (!have_autocorr && !have_crosscorr) return;
/* Get number of output baselines. */
num_baseln_out = num_baseln_in;
if (have_autocorr)
num_baseln_out += num_stations;
/* Check polarisation dimension consistency:
* num_pols_in can be less than num_pols_out, but not vice-versa. */
if (num_pols_in > num_pols_out)
{
*status = OSKAR_ERR_DIMENSION_MISMATCH;
return;
}
/* Check the dimensions match. */
if (oskar_ms_num_pols(ms) != num_pols_out ||
oskar_ms_num_stations(ms) != num_stations)
{
*status = OSKAR_ERR_DIMENSION_MISMATCH;
return;
}
/* Check the reference frequencies match. */
if (fabs(oskar_ms_ref_freq_hz(ms) - ref_freq_hz) > 1e-10)
{
*status = OSKAR_ERR_VALUE_MISMATCH;
return;
}
/* Check the phase centres are the same. */
if (fabs(oskar_ms_phase_centre_ra_rad(ms) - ra_rad) > 1e-10 ||
fabs(oskar_ms_phase_centre_dec_rad(ms) - dec_rad) > 1e-10)
{
*status = OSKAR_ERR_VALUE_MISMATCH;
return;
}
/* Add visibilities and u,v,w coordinates. */
temp_vis = oskar_mem_create(prec | OSKAR_COMPLEX, OSKAR_CPU,
num_baseln_out * num_channels * num_pols_out, status);
temp_uu = oskar_mem_create(prec, OSKAR_CPU, num_baseln_out, status);
temp_vv = oskar_mem_create(prec, OSKAR_CPU, num_baseln_out, status);
temp_ww = oskar_mem_create(prec, OSKAR_CPU, num_baseln_out, status);
xcorr = oskar_mem_void_const(in_xcorr);
acorr = oskar_mem_void_const(in_acorr);
out = oskar_mem_void(temp_vis);
if (prec == OSKAR_DOUBLE)
{
const double *uu_in, *vv_in, *ww_in;
double *uu_out, *vv_out, *ww_out;
uu_in = oskar_mem_double_const(in_uu, status);
vv_in = oskar_mem_double_const(in_vv, status);
ww_in = oskar_mem_double_const(in_ww, status);
uu_out = oskar_mem_double(temp_uu, status);
vv_out = oskar_mem_double(temp_vv, status);
ww_out = oskar_mem_double(temp_ww, status);
for (t = 0; t < num_times; ++t)
{
/* Construct the baseline coordinates for the given time. */
int start_row = (start_time_index + t) * num_baseln_out;
for (a1 = 0, b = 0, i_out = 0; a1 < num_stations; ++a1)
{
if (have_autocorr)
{
uu_out[i_out] = 0.0;
vv_out[i_out] = 0.0;
ww_out[i_out] = 0.0;
++i_out;
}
if (have_crosscorr)
{
for (a2 = a1 + 1; a2 < num_stations; ++a2, ++b, ++i_out)
{
i = num_baseln_in * t + b;
uu_out[i_out] = uu_in[i];
vv_out[i_out] = vv_in[i];
ww_out[i_out] = ww_in[i];
}
}
}
for (c = 0, i_out = 0; c < num_channels; ++c)
{
/* Construct amplitude data for the given time and channel. */
if (num_pols_in == 4)
{
for (a1 = 0, b = 0; a1 < num_stations; ++a1)
{
if (have_autocorr)
{
i = num_stations * (t * num_channels + c) + a1;
((double4c*)out)[i_out++] =
((const double4c*)acorr)[i];
}
if (have_crosscorr)
{
for (a2 = a1 + 1; a2 < num_stations; ++b, ++a2)
{
i = num_baseln_in * (t * num_channels + c) + b;
((double4c*)out)[i_out++] =
((const double4c*)xcorr)[i];
}
}
}
}
else if (num_pols_in == 1 && num_pols_out == 1)
{
for (a1 = 0, b = 0; a1 < num_stations; ++a1)
{
if (have_autocorr)
{
i = num_stations * (t * num_channels + c) + a1;
((double2*)out)[i_out++] =
((const double2*)acorr)[i];
}
if (have_crosscorr)
{
for (a2 = a1 + 1; a2 < num_stations; ++b, ++a2)
{
i = num_baseln_in * (t * num_channels + c) + b;
((double2*)out)[i_out++] =
((const double2*)xcorr)[i];
}
}
}
}
else
{
double2 vis_amp, *out_;
out_ = (double2*)out;
for (a1 = 0, b = 0; a1 < num_stations; ++a1)
{
if (have_autocorr)
{
i = num_stations * (t * num_channels + c) + a1;
vis_amp = ((const double2*)acorr)[i];
out_[i_out + 0] = vis_amp; /* XX */
out_[i_out + 1].x = 0.0; /* XY */
out_[i_out + 1].y = 0.0; /* XY */
out_[i_out + 2].x = 0.0; /* YX */
out_[i_out + 2].y = 0.0; /* YX */
out_[i_out + 3] = vis_amp; /* YY */
i_out += 4;
}
if (have_crosscorr)
{
for (a2 = a1 + 1; a2 < num_stations; ++b, ++a2)
{
i = num_baseln_in * (t * num_channels + c) + b;
vis_amp = ((const double2*)xcorr)[i];
out_[i_out + 0] = vis_amp; /* XX */
out_[i_out + 1].x = 0.0; /* XY */
out_[i_out + 1].y = 0.0; /* XY */
out_[i_out + 2].x = 0.0; /* YX */
out_[i_out + 2].y = 0.0; /* YX */
out_[i_out + 3] = vis_amp; /* YY */
i_out += 4;
}
}
}
}
}
oskar_ms_write_coords_d(ms, start_row, num_baseln_out,
uu_out, vv_out, ww_out, exposure_sec, interval_sec,
t_start_sec + (t * interval_sec));
oskar_ms_write_vis_d(ms, start_row, start_chan_index,
num_channels, num_baseln_out, (const double*)out);
}
}
else if (prec == OSKAR_SINGLE)
{
const float *uu_in, *vv_in, *ww_in;
float *uu_out, *vv_out, *ww_out;
uu_in = oskar_mem_float_const(in_uu, status);
vv_in = oskar_mem_float_const(in_vv, status);
ww_in = oskar_mem_float_const(in_ww, status);
uu_out = oskar_mem_float(temp_uu, status);
vv_out = oskar_mem_float(temp_vv, status);
ww_out = oskar_mem_float(temp_ww, status);
for (t = 0; t < num_times; ++t)
{
/* Construct the baseline coordinates for the given time. */
int start_row = (start_time_index + t) * num_baseln_out;
for (a1 = 0, b = 0, i_out = 0; a1 < num_stations; ++a1)
{
if (have_autocorr)
{
uu_out[i_out] = 0.0;
vv_out[i_out] = 0.0;
ww_out[i_out] = 0.0;
++i_out;
}
if (have_crosscorr)
{
for (a2 = a1 + 1; a2 < num_stations; ++a2, ++b, ++i_out)
{
i = num_baseln_in * t + b;
uu_out[i_out] = uu_in[i];
vv_out[i_out] = vv_in[i];
ww_out[i_out] = ww_in[i];
}
}
}
for (c = 0, i_out = 0; c < num_channels; ++c)
{
/* Construct amplitude data for the given time and channel. */
if (num_pols_in == 4)
{
for (a1 = 0, b = 0; a1 < num_stations; ++a1)
{
if (have_autocorr)
{
i = num_stations * (t * num_channels + c) + a1;
((float4c*)out)[i_out++] =
((const float4c*)acorr)[i];
}
if (have_crosscorr)
{
for (a2 = a1 + 1; a2 < num_stations; ++b, ++a2)
{
i = num_baseln_in * (t * num_channels + c) + b;
((float4c*)out)[i_out++] =
((const float4c*)xcorr)[i];
}
}
}
}
else if (num_pols_in == 1 && num_pols_out == 1)
{
for (a1 = 0, b = 0; a1 < num_stations; ++a1)
{
if (have_autocorr)
{
i = num_stations * (t * num_channels + c) + a1;
((float2*)out)[i_out++] =
((const float2*)acorr)[i];
}
if (have_crosscorr)
{
for (a2 = a1 + 1; a2 < num_stations; ++b, ++a2)
{
i = num_baseln_in * (t * num_channels + c) + b;
((float2*)out)[i_out++] =
((const float2*)xcorr)[i];
}
}
}
}
else
{
float2 vis_amp, *out_;
out_ = (float2*)out;
for (a1 = 0, b = 0; a1 < num_stations; ++a1)
{
if (have_autocorr)
{
i = num_stations * (t * num_channels + c) + a1;
vis_amp = ((const float2*)acorr)[i];
out_[i_out + 0] = vis_amp; /* XX */
out_[i_out + 1].x = 0.0; /* XY */
out_[i_out + 1].y = 0.0; /* XY */
out_[i_out + 2].x = 0.0; /* YX */
out_[i_out + 2].y = 0.0; /* YX */
out_[i_out + 3] = vis_amp; /* YY */
i_out += 4;
}
if (have_crosscorr)
{
for (a2 = a1 + 1; a2 < num_stations; ++b, ++a2)
{
i = num_baseln_in * (t * num_channels + c) + b;
vis_amp = ((const float2*)xcorr)[i];
out_[i_out + 0] = vis_amp; /* XX */
out_[i_out + 1].x = 0.0; /* XY */
out_[i_out + 1].y = 0.0; /* XY */
out_[i_out + 2].x = 0.0; /* YX */
out_[i_out + 2].y = 0.0; /* YX */
out_[i_out + 3] = vis_amp; /* YY */
i_out += 4;
}
}
}
}
}
oskar_ms_write_coords_f(ms, start_row, num_baseln_out,
uu_out, vv_out, ww_out, exposure_sec, interval_sec,
t_start_sec + (t * interval_sec));
oskar_ms_write_vis_f(ms, start_row, start_chan_index,
num_channels, num_baseln_out, (const float*)out);
}
}
else
{
*status = OSKAR_ERR_BAD_DATA_TYPE;
}
/* Cleanup. */
oskar_mem_free(temp_vis, status);
oskar_mem_free(temp_uu, status);
oskar_mem_free(temp_vv, status);
oskar_mem_free(temp_ww, status);
}
/*
* Translation layer from new file format to old structure.
* This will be deleted when the old oskar_Vis structure is fully retired.
*/
oskar_Vis* oskar_vis_read_new(oskar_Binary* h, int* status)
{
oskar_VisHeader* hdr = 0;
oskar_VisBlock* blk = 0;
oskar_Vis* vis = 0;
oskar_Mem* amp = 0;
const oskar_Mem* xcorr = 0;
int amp_type, max_times_per_block, num_channels, num_stations, num_times;
int i, num_blocks;
double freq_ref_hz, freq_inc_hz, time_ref_mjd_utc, time_inc_sec;
/* Try to read the new header. */
hdr = oskar_vis_header_read(h, status);
if (*status)
{
oskar_vis_header_free(hdr, status);
return 0;
}
/* Create the old vis structure. */
amp_type = oskar_vis_header_amp_type(hdr);
max_times_per_block = oskar_vis_header_max_times_per_block(hdr);
num_channels = oskar_vis_header_num_channels_total(hdr);
num_stations = oskar_vis_header_num_stations(hdr);
num_times = oskar_vis_header_num_times_total(hdr);
vis = oskar_vis_create(amp_type, OSKAR_CPU, num_channels, num_times,
num_stations, status);
if (*status)
{
oskar_vis_header_free(hdr, status);
oskar_vis_free(vis, status);
return 0;
}
/* Copy station coordinates and metadata. */
freq_ref_hz = oskar_vis_header_freq_start_hz(hdr);
freq_inc_hz = oskar_vis_header_freq_inc_hz(hdr);
time_ref_mjd_utc = oskar_vis_header_time_start_mjd_utc(hdr);
time_inc_sec = oskar_vis_header_time_inc_sec(hdr);
oskar_mem_copy(oskar_vis_station_x_offset_ecef_metres(vis),
oskar_vis_header_station_x_offset_ecef_metres_const(hdr), status);
oskar_mem_copy(oskar_vis_station_y_offset_ecef_metres(vis),
oskar_vis_header_station_y_offset_ecef_metres_const(hdr), status);
oskar_mem_copy(oskar_vis_station_z_offset_ecef_metres(vis),
oskar_vis_header_station_z_offset_ecef_metres_const(hdr), status);
oskar_mem_copy(oskar_vis_settings(vis),
oskar_vis_header_settings_const(hdr), status);
oskar_mem_copy(oskar_vis_telescope_path(vis),
oskar_vis_header_telescope_path_const(hdr), status);
oskar_vis_set_channel_bandwidth_hz(vis,
oskar_vis_header_channel_bandwidth_hz(hdr));
oskar_vis_set_freq_inc_hz(vis, freq_inc_hz);
oskar_vis_set_freq_start_hz(vis, freq_ref_hz);
oskar_vis_set_phase_centre(vis,
oskar_vis_header_phase_centre_ra_deg(hdr),
oskar_vis_header_phase_centre_dec_deg(hdr));
oskar_vis_set_telescope_position(vis,
oskar_vis_header_telescope_lon_deg(hdr),
oskar_vis_header_telescope_lat_deg(hdr),
oskar_vis_header_telescope_alt_metres(hdr));
oskar_vis_set_time_average_sec(vis,
oskar_vis_header_time_average_sec(hdr));
oskar_vis_set_time_inc_sec(vis, time_inc_sec);
oskar_vis_set_time_start_mjd_utc(vis, time_ref_mjd_utc);
/* Create a visibility block to read into. */
blk = oskar_vis_block_create_from_header(OSKAR_CPU, hdr, status);
amp = oskar_vis_amplitude(vis);
xcorr = oskar_vis_block_cross_correlations_const(blk);
/* Work out the number of blocks. */
num_blocks = (num_times + max_times_per_block - 1) / max_times_per_block;
for (i = 0; i < num_blocks; ++i)
{
int block_length, num_baselines, time_offset, total_baselines, t, c;
/* Read the block. */
oskar_vis_block_read(blk, hdr, h, i, status);
num_baselines = oskar_vis_block_num_baselines(blk);
block_length = oskar_vis_block_num_times(blk);
/* Copy the baseline coordinate data. */
time_offset = i * max_times_per_block * num_baselines;
total_baselines = num_baselines * block_length;
oskar_mem_copy_contents(oskar_vis_baseline_uu_metres(vis),
oskar_vis_block_baseline_uu_metres_const(blk),
time_offset, 0, total_baselines, status);
oskar_mem_copy_contents(oskar_vis_baseline_vv_metres(vis),
oskar_vis_block_baseline_vv_metres_const(blk),
time_offset, 0, total_baselines, status);
oskar_mem_copy_contents(oskar_vis_baseline_ww_metres(vis),
oskar_vis_block_baseline_ww_metres_const(blk),
time_offset, 0, total_baselines, status);
/* Fill the array in the old dimension order. */
for (t = 0; t < block_length; ++t)
{
for (c = 0; c < num_channels; ++c)
{
oskar_mem_copy_contents(amp, xcorr, num_baselines *
(c * num_times + i * max_times_per_block + t),
num_baselines * (t * num_channels + c),
num_baselines, status);
}
}
}
/* Clean up and return. */
oskar_vis_block_free(blk, status);
oskar_vis_header_free(hdr, status);
return vis;
}
