void Scene::processGraph(string nodeID, Appearance *app)
{
Node *node = nodes[nodeID];
if(node->appearance) //se nó tem aparência, substitui a do pai
app=node->appearance;
if(app) //se a aparência não for nula
app->apply(); //aplica a aparência para desenhar as primitivas
else
(new CGFappearance())->apply(); //material por defeito
if (node->displayList) //se houver uma display list, chama-a e ignora filhos
glCallList(node->displayListID);
else //se não, percorre normalmente
{
glMultMatrixf(node->T);
if (node->animation != NULL && runAnimations)
node->animation->draw();
for (vector<Primitiva *>::iterator it = node->primitivas.begin(); it != node->primitivas.end(); it++)
(*it)->draw();
for (vector<string>::iterator it = node->children.begin(); it != node->children.end(); it++)
{
glPushMatrix();
processGraph(*it, app);
glPopMatrix();
}
}
}
string AlienDictionary::alienOrder() {
processGraph();
topologicalSort();
if (cycle) return "";
string retval;
for (int i=rPostOrder.size()-1; i>=0; i--) {
retval.push_back(nodeToChar[rPostOrder[i]]);
}
return retval;
}
void doJob(const std::string& inputMaf, const std::string& outDir,
std::vector<ParamPair> simplParams, std::vector<int> minBlockSizes)
{
const int MIN_ALIGNMENT = 1;
const int MAX_ALIGNMENT_GAP = 0;
const auto EMPTY_GROUP = BlockGroups();
BlockGroups blockGroups = EMPTY_GROUP;
PermVec currentBlocks;
//sort blocks in reverse order (will use it as stack)
std::sort(minBlockSizes.begin(), minBlockSizes.end(), std::greater<int>());
makeDirectory(outDir);
//read maf alignment and join adjacent columns
std::cerr << "\tParsing MAF file\n";
PermVec mafBlocks = mafToPermutations(inputMaf, MIN_ALIGNMENT);
compressPaths(mafBlocks, MAX_ALIGNMENT_GAP, currentBlocks, blockGroups);
//iterative simplification
for (const ParamPair& ppair : simplParams)
{
if (minBlockSizes.empty()) break;
//output blocks of certain size
while (!minBlockSizes.empty() && minBlockSizes.back() < ppair.minBlock)
{
std::string blockDir = outDir + "/" +
std::to_string(minBlockSizes.back());
outputBlocks(blockDir, currentBlocks, blockGroups,
minBlockSizes.back());
minBlockSizes.pop_back();
}
std::cerr << "\tSimplification with " << ppair.minBlock << " "
<< ppair.maxGap << std::endl;
PermVec inputBlocks = filterBySize(currentBlocks, EMPTY_GROUP,
ppair.minBlock, true);
PermVec outBlocks;
blockGroups.clear();
processGraph(inputBlocks, ppair.maxGap, outBlocks, blockGroups);
currentBlocks = outBlocks;
}
//if any left
for (int minBlock : minBlockSizes)
{
std::string blockDir = outDir + "/" + std::to_string(minBlock);
outputBlocks(blockDir, currentBlocks, blockGroups, minBlock);
}
}
void YafFile::loadFile(char* filename)
{
TiXmlDocument* doc=new TiXmlDocument( filename );
bool loadOkay = doc->LoadFile();
if ( !loadOkay )
{
printf( "Could not load file '%s'. Error='%s'. Exiting.\n", filename, doc->ErrorDesc() );
exit( 1 );
}
TiXmlElement* yafElement= doc->FirstChildElement( "yaf" );
if (yafElement == NULL)
{
printf("Main yaf block element not found! Exiting!\n");
exit(1);
}
TiXmlElement* globalsElement = yafElement->FirstChildElement( "globals" );
processGlobals(globalsElement);
TiXmlElement* lightingElement = yafElement->FirstChildElement("lighting");
processGlobalLight(lightingElement);
processLights(lightingElement);
TiXmlElement* camerasElement = yafElement->FirstChildElement("cameras");
processCameras(camerasElement);
TiXmlElement* texturesElement = yafElement->FirstChildElement("textures");
processTextures(texturesElement);
TiXmlElement* appearanceElement = yafElement->FirstChildElement("appearances");
processAppearances(appearanceElement);
TiXmlElement* animationsElement = yafElement->FirstChildElement("animations");
if(animationsElement!=NULL)
{
processAnimations(animationsElement);
map<string,Animation*>::iterator it = animations.begin();
for(;it!=animations.end();it++)
{
(*it->second).print();
}
}
TiXmlElement* graphElement = yafElement->FirstChildElement("graph");
processGraph(graphElement);
}
void YafScene::processGraph( string rootid, vector<Appearence*> &appstack ){
GraphNode *n0 = sg->graphNodes->at( rootid );
sg->updateTheme();
bool newApp = false;
unsigned int maxSize = n0->nodeRefIdVector.size();
if( n0->hasDL() ){
glCallList( n0->getDL() );
}else{
if( n0->appRefId != "" ){
if( sg->getAppearences()->count(n0->getAppRefId()) ){ // Is this really needed? //
appstack.push_back( sg->getAppearences()->at(n0->getAppRefId()));
newApp = true;
}
}
if(!appstack.empty()){
glMaterialfv(GL_FRONT, GL_EMISSION, appstack[appstack.size()-1]->getEmissive() );
appstack[appstack.size()-1]->apply();
}
glMultMatrixf( n0->getTransformationMatrix() );
if( n0->hasAnimation() )
sg->getAnimations()->at( n0->getAnimationRef() )->apply( n0->getTransformationMatrix()[12], n0->getTransformationMatrix()[13], n0->getTransformationMatrix()[14] );
if( n0->primitives.size() > 0){
for(unsigned int i=0; i<n0->primitives.size(); i++){
n0->primitives[i]->draw();
}
}
if( newApp && !appstack.empty() ) appstack.pop_back();
for(unsigned int i = 0; i<maxSize; i++){
glPushMatrix();
processGraph( n0->nodeRefIdVector[i], appstack );
glPopMatrix();
}
}
}
void XMLScene::loadFile()
{
TiXmlDocument* doc=new TiXmlDocument( filename );
bool loadOkay = doc->LoadFile();
if ( !loadOkay )
{
printf( "Could not load file '%s'. Error='%s'. Exiting.\n", filename, doc->ErrorDesc() );
exit( 1 );
}
TiXmlElement* anfElement= doc->FirstChildElement( "anf" );
if (anfElement == NULL)
{
printf("Main anf block element not found! Exiting!\n");
exit(1);
}
TiXmlElement* globalsElement = anfElement->FirstChildElement( "globals" );
processGlobals(globalsElement);
TiXmlElement* camerasElement = anfElement->FirstChildElement("cameras");
processCameras(camerasElement);
TiXmlElement* lightingElement = anfElement->FirstChildElement("lights");
defineGlobalVariables();
processLights(lightingElement);
defineGlobalVariables();
TiXmlElement* texturesElement = anfElement->FirstChildElement("textures");
processTextures(texturesElement);
TiXmlElement* appearanceElement = anfElement->FirstChildElement("appearances");
processAppearances(appearanceElement);
TiXmlElement* graphElement = anfElement->FirstChildElement("graph");
processGraph(graphElement);
//sets the children to the correct bool
sceneGraph->setChildDisplay();
}
void YafScene::display(){
// ---- BEGIN Background, camera and axis setup
// Clear image and depth buffer everytime we update the scene
glClear(GL_COLOR_BUFFER_BIT|GL_DEPTH_BUFFER_BIT);
// Initialize Model-View matrix as identity (no transformation
glMatrixMode(GL_MODELVIEW);
glLoadIdentity();
// Drawmode //
if( *(sg->getDrawModeChoice()) == 0 )
glPolygonMode( GL_FRONT_AND_BACK, GL_FILL );
else
if( *(sg->getDrawModeChoice()) == 1 )
glPolygonMode( GL_FRONT_AND_BACK, GL_LINE );
else
if( *(sg->getDrawModeChoice()) == 2 )
glPolygonMode( GL_FRONT_AND_BACK, GL_POINT );
// Apply transformations corresponding to the camera position relative to the origin
//activeCamera->applyView();
/*for( map<string, Camera*>::iterator it = sg->getCameras()->begin(); it != sg->getCameras()->end(); it++ ){
if( distance(sg->getCameras()->begin(), it) == *(sg->getActualCamera()))
this->activateCamera( *(sg->getActualCamera()) + 3 );
}*/
switch(*(sg->getActualCamera())){
case 0 : activeCamera->applyView(); // Free Camera //
break;
case 1 : gluLookAt (0.0, 7.5, 12.5, 12.5, 3.0, 12.5, 0.0, 1.0, 0.0); // White Player //
break;
case 2 : gluLookAt (25.0, 7.5, 12.5, 12.5, 3.0, 12.5, 0.0, 1.0, 0.0); // Black Player //
break;
case 3 : gluLookAt (12.5, 7.5, 0.0, 12.5, 3.0, 12.5, 0.0, 1.0, 0.0); // Sideview //
break;
case 4 : gluLookAt (0.0, 15.0, 0.0, 12.5, 5.0, 12.5, 0.0, 1.0, 0.0); // OverView //
break;
}
//activeCamera->applyView();
// Draw (and update) light
for( map<string, Lighting*>::iterator it = sg->getLights()->begin(); it != sg->getLights()->end(); it++ ){
if( *(it->second->getToogled()) ){
it->second->enable();
}
else
it->second->disable();
it->second->update();
it->second->draw();
}
// Draw axis
//axis.draw();
// ---- END Background, camera and axis setup
// ---- END feature demos
vector<Appearence*> stack;
stack.clear();
processGraph( this->sg->getRootid(), stack );
if( sg->gameOver ){
char *gameOverMsg = (char *)malloc(sizeof(char) * 256 );
char *gameOverMsgAux = (char *)malloc(sizeof(char) * 65 );
strcpy(gameOverMsg, "GAME OVER ! ");
if( sg->p1points > sg->p2points ){
strcat(gameOverMsg, "Player ");
itoa(1, gameOverMsgAux, 10);
strcat(gameOverMsg, gameOverMsgAux);
strcat(gameOverMsg, " Wins!");
} else if( sg->p2points > sg->p1points ){
strcat(gameOverMsg, "Player ");
itoa(2, gameOverMsgAux, 10);
strcat(gameOverMsg, gameOverMsgAux);
strcat(gameOverMsg, " Wins!");
} else {
strcat(gameOverMsg, "It's a draw!");
}
sg->getPainter()->draw(gameOverMsg, 100, 100);
char *gameTime = (char *)malloc(sizeof(char)*512);
char *gameTimeAux = (char *)malloc(sizeof(char)*65);
strcpy(gameTime, "The game took ");
itoa((sg->endTime-sg->startTime)/1000.0, gameTimeAux, 10);
strcat(gameTime, gameTimeAux);
strcat(gameTime, " seconds!");
sg->getPainter()->draw(gameTime, 100, 120);
}
char *p1score = (char *)malloc(sizeof(char) *256);
char *p2score = (char *)malloc(sizeof(char) *256);
char *p1aux = (char *)malloc(sizeof(char)*65);
char *p2aux = (char *)malloc(sizeof(char)*65);
strcat(p1score, "Player 1: ");
strcat(p2score, "Player 2: ");
itoa(sg->p1points, p1aux, 10);
strcat(p1score, p1aux);
itoa(sg->p2points, p2aux, 10);
strcat(p2score, p2aux);
strcat(p1score, " points!");
strcat(p2score, " points!");
sg->getPainter()->draw(p1score, 100, 140);
sg->getPainter()->draw(p2score, 100, 160);
if( sg->getPlayingMovie() == true ) {
if( movieIndex == 0 ){
sg->setCurrentLogical( sg->getLogicalBoard() );
sg->setCurrentAppearence( sg->getAppearenceBoard() );
this->sg->setBothBoards( sg->pStack[movieIndex], sg->pStack[movieIndex+1] );
movieIndex += 2;
timeElapsed = glutGet(GLUT_ELAPSED_TIME);
}
if((glutGet(GLUT_ELAPSED_TIME) - timeElapsed > 1000 ) && (movieIndex < sg->pStack.size())){
this->sg->setBothBoards( sg->pStack[movieIndex], sg->pStack[movieIndex+1] );
movieIndex += 2;
timeElapsed = glutGet(GLUT_ELAPSED_TIME);
}
if((movieIndex >= sg->pStack.size()) && (glutGet(GLUT_ELAPSED_TIME) - timeElapsed > 1000 )){
this->sg->setBothBoards( sg->getCurrentLogical(), sg->getCurrentAppearence() );
sg->setPlayingMovie( false );
movieIndex = 0;
timeElapsed = 0;
}
}
glPushMatrix();
glTranslatef(8.5 ,0.5, 8.5);
this->sg->getBoard()->draw();
glPopMatrix();
//this->sg->getText()->draw("FAIL");
// We have been drawing in a memory area that is not visible - the back buffer,
// while the graphics card is showing the contents of another buffer - the front buffer
// glutSwapBuffers() will swap pointers so that the back buffer becomes the front buffer and vice-versa
glutSwapBuffers();
}
void Scene::display()
{
//limpa a cor activa debackground e define nova cor RGBA
if (gameEnvironment==1)
glClearColor(backgroundR, backgroundG, backgroundB, backgroundA);
else if (gameEnvironment==2)
glClearColor(backgroundR2, backgroundG2, backgroundB2, backgroundA2);
// Clear image and depth buffer everytime we update the scene
glClear(GL_COLOR_BUFFER_BIT|GL_DEPTH_BUFFER_BIT);
//Define drawmode
glPolygonMode(GL_FRONT_AND_BACK, this->drawMode);
// Initialize Model-View matrix as identity (no transformation
glMatrixMode(GL_MODELVIEW);
glLoadIdentity();
// Apply transformations corresponding to the camera position relative to the origin
CGFscene::activeCamera->applyView();
GLint rMode;
glGetIntegerv(GL_RENDER_MODE, &rMode);
if (rMode == GL_RENDER) //se em modo normal, desenha a cena
{
// Draw (and update) light
std::list<CGFlight *>::iterator it = scene_lights.begin();
for (; it != scene_lights.end(); ++it)
((Light *)(*it))->draw();
// Draw axis
//axis.draw();
// ---- END Background, camera and axis setup
processGraph(rootNode); //temos de passar o id do nó inicial
//board->draw();
// We have been drawing in a memory area that is not visible - the back buffer,
// while the graphics card is showing the contents of another buffer - the front buffer
// glutSwapBuffers() will swap pointers so that the back buffer becomes the front buffer and vice-versa
//board->drawHotspots(); //Testing
}
if (!Animation::animationRunning || !waitForAnimations)
{
if (inReplay)
replay();
else if (!computerPlaying) //only draw arrows and hotspots if it's a human player's turn
{
if (rMode == GL_SELECT && gameState == PLACEPIECE && gameStarted) //se em modo de pick, desenha os hotspots
board->drawHotspots();
if (gameState == ROTATE) //in all render modes
board->drawArrows(player);
}
else //if the computer is playing, start the rotation
computerPlay();
}
glutSwapBuffers();
//std::this_thread::sleep_for(std::chrono::milliseconds(17));
}
void LazyConstraintCallback::main() {
assert( graphs.numGraphs() == 2 );
for ( int i = 0, e = graphs.numGraphs(); i != e; ++i ) {
processGraph( i );
}
}
bool GraphMLImporter::processGraph_Nodes(
QDomElement& graphElement
)
{
bool ok = true;
iColor_ = 0;
// nodes
for ( QDomElement nodeElement = graphElement.firstChildElement( "node" ); ok && !nodeElement.isNull(); nodeElement = nodeElement.nextSiblingElement( "node" ) ) {
QString nameId = nodeElement.attribute( "id" );
QString name = NULL;
// pozerame sa na data ktore nesie
Data::Type* newNodeType;
newNodeType = NULL;
QDomNodeList nodeDataList = nodeElement.elementsByTagName( "data" );
for ( unsigned int j = 0; j < nodeDataList.length(); j++ ) {
QDomNode nodeData = nodeDataList.item( static_cast<int>( j ) );
if ( !nodeData.isNull() && nodeData.isElement() ) {
QDomElement nodeDataElement = nodeData.toElement();
QString dataName = nodeDataElement.attribute( "key" );
QString dataValue = nodeDataElement.text();
// rozpoznavame typy
if ( dataName == nodeTypeAttribute_ ) {
// overime ci uz dany typ existuje v grafe
QList<Data::Type*> types = context_->getGraph().getTypesByName( dataValue );
if ( types.isEmpty() ) {
QMap<QString, QString>* settings = new QMap<QString, QString>;
settings->insert( "color.R", QString::number( colors_[iColor_][0] ) );
settings->insert( "color.G", QString::number( colors_[iColor_][1] ) );
settings->insert( "color.B", QString::number( colors_[iColor_][2] ) );
settings->insert( "color.A", QString::number( colors_[iColor_][3] ) );
settings->insert( "scale", Util::ApplicationConfig::get()->getValue( "Viewer.Textures.DefaultNodeScale" ) );
settings->insert( "textureFile", Util::ApplicationConfig::get()->getValue( "Viewer.Textures.Node" ) );
newNodeType = context_->getGraph().addType( dataValue, settings );
iColor_++;
if ( iColor_ == colors_.size() ) {
iColor_ = 0;
}
}
else {
newNodeType = types.first();
}
}
else {
// kazde dalsie data nacitame do nosica dat - Node.name
// FIXME potom prerobit cez Adamove Node.settings
if ( name == NULL ) {
name = dataName+":"+dataValue;
}
else {
name += " | "+dataName+":"+dataValue;
}
}
}
}
// ak sme nenasli name, tak ako name pouzijeme aspon ID
if ( name == NULL ) {
name = nameId;
}
// ak nebol najdeny ziaden typ, tak pouzijeme defaultny typ
osg::ref_ptr<Data::Node> node;
if ( newNodeType == NULL ) {
node = context_->getGraph().addNode( name, nodeType_ );
}
else {
node = context_->getGraph().addNode( name, newNodeType );
}
readNodes_->addNode( nameId, node );
// subgraphs
for ( QDomElement subgraphElement = nodeElement.firstChildElement( "graph" ); ok && !subgraphElement.isNull(); subgraphElement = subgraphElement.nextSiblingElement( "graph" ) ) {
if ( ok ) {
context_->getGraph().createNestedGraph( node );
}
if ( ok ) {
ok = processGraph( subgraphElement );
}
if ( ok ) {
context_->getGraph().closeNestedGraph();
}
}
entitiesProcessed_++;
context_->getInfoHandler().setProgress( static_cast<unsigned int>( entitiesProcessed_ * 100 / entitiesCount_ ) );
}
return ok;
}
bool GraphMLImporter::import(
ImporterContext& context
)
{
// context
context_ = &context;
// helpers
graphOp_.reset( new GraphOperations( context_->getGraph() ) );
readNodes_.reset( new ReadNodesStore() );
// default types
edgeType_ = NULL;
nodeType_ = NULL;
( void )graphOp_->addDefaultTypes( edgeType_, nodeType_ );
// ziskame pristup ku nastaveniam
Util::ApplicationConfig* appConf = Util::ApplicationConfig::get();
edgeTypeAttribute_ = appConf->getValue( "GraphMLParser.edgeTypeAttribute" );
nodeTypeAttribute_ = appConf->getValue( "GraphMLParser.nodeTypeAttribute" );
// pole farieb FIXME oddelit farby hran od farieb uzlov
colors_.push_back( ColorType( 0, 1, 0, 1 ) );
colors_.push_back( ColorType( 0, 1, 1, 1 ) );
colors_.push_back( ColorType( 1, 0, 0, 1 ) );
colors_.push_back( ColorType( 1, 0, 1, 1 ) );
colors_.push_back( ColorType( 1, 1, 0, 1 ) );
colors_.push_back( ColorType( 1, 1, 1, 1 ) );
iColor_ = 0;
bool ok = true;
// ziskame graph element
QDomElement graphElement;
if ( ok ) {
QDomNode graphNode;
QDomDocument doc( "graphMLDocument" );
if ( doc.setContent( &( context_->getStream() ) ) ) {
QDomElement docElem = doc.documentElement();
if ( !docElem.isNull() && docElem.nodeName() == "graphml" ) {
QDomNodeList graphNodes = docElem.elementsByTagName( "graph" );
if ( graphNodes.length() > 0 ) {
graphNode = graphNodes.item( 0 );
if ( !graphNode.isNull() && graphNode.parentNode() == docElem && graphNode.isElement() ) {
graphElement = graphNode.toElement();
}
}
}
}
ok = !graphElement.isNull();
context_->getInfoHandler().reportError( ok, "Zvoleny subor nie je validny GraphML subor." );
}
if ( ok ) {
// for progress reporting
entitiesProcessed_ = 0;
entitiesCount_ = graphElement.elementsByTagName( "node" ).size() + graphElement.elementsByTagName( "edge" ).count();
}
if ( ok ) {
ok = processGraph( graphElement );
}
return ok;
}
bool GraphMLImporter::processGraph_Edges(
QDomElement& graphElement
)
{
bool ok = true;
iColor_ = 0;
// default direction
bool defaultDirection;
if ( graphElement.attribute( "edgedefault" ) == "directed" ) {
defaultDirection = true;
}
else {
defaultDirection = false;
}
// edges
for ( QDomElement edgeElement = graphElement.firstChildElement( "edge" ); ok && !edgeElement.isNull(); edgeElement = edgeElement.nextSiblingElement( "edge" ) ) {
QString sourceId = edgeElement.attribute( "source" );
QString targetId = edgeElement.attribute( "target" );
QString direction = NULL;
bool directed = false;
direction = edgeElement.attribute( "directed" );
if ( direction == NULL ) {
directed = defaultDirection;
if ( directed ) {
direction = "_directed";
}
else {
direction = "";
}
}
else {
if ( direction == "true" ) {
direction = "_directed";
directed = true;
}
else {
direction = "";
directed = false;
}
}
// pozerame sa na data ktore hrana nesie
Data::Type* newEdgeType;
newEdgeType = NULL;
QDomNodeList edgeDataList = edgeElement.elementsByTagName( "data" );
for ( unsigned int j = 0; j < edgeDataList.length(); j++ ) {
QDomNode edgeData = edgeDataList.item( static_cast<int>( j ) );
if ( !edgeData.isNull() && edgeData.isElement() ) {
QDomElement edgeDataElement = edgeData.toElement();
QString dataName = edgeDataElement.attribute( "key" );
QString dataValue = edgeDataElement.text();
// rozpoznavame typy deklarovane atributom relation
if ( dataName == edgeTypeAttribute_ ) {
// overime ci uz dany typ existuje v grafe
QList<Data::Type*> types = context_->getGraph().getTypesByName( dataValue+direction );
if ( types.isEmpty() ) {
QMap<QString, QString>* settings = new QMap<QString, QString>;
// FIXME spravit tak, aby to rotovalo po tom poli - palo az to budes prerabat tak pre hrany pouzi ine pole, take co ma alfu na 0.5.. a to sa tyka aj uzlov s defaultnym typom
settings->insert( "color.R", QString::number( colors_[iColor_][0] ) );
settings->insert( "color.G", QString::number( colors_[iColor_][1] ) );
settings->insert( "color.B", QString::number( colors_[iColor_][2] ) );
settings->insert( "color.A", QString::number( colors_[iColor_][3] ) );
settings->insert( "scale", Util::ApplicationConfig::get()->getValue( "Viewer.Textures.DefaultNodeScale" ) );
if ( !directed ) {
settings->insert( "textureFile", Util::ApplicationConfig::get()->getValue( "Viewer.Textures.Edge" ) );
}
else {
settings->insert( "textureFile", Util::ApplicationConfig::get()->getValue( "Viewer.Textures.OrientedEdgePrefix" ) );
settings->insert( "textureFile", Util::ApplicationConfig::get()->getValue( "Viewer.Textures.OrientedEdgeSuffix" ) );
}
newEdgeType = context_->getGraph().addType( dataValue+direction, settings );
iColor_++;
if ( iColor_ == colors_.size() ) {
iColor_ = 0;
}
}
else {
newEdgeType = types.first();
}
}
else {
// kazde dalsie data nacitame do nosica dat - Edge.name
// FIXME potom prerobit cez Adamove Node.settings
}
}
}
// ak nebol najdeny typ, tak pouzijeme defaulty
if ( newEdgeType == NULL ) {
newEdgeType = edgeType_;
}
context_->getGraph().addEdge( sourceId+targetId, readNodes_->get( sourceId ), readNodes_->get( targetId ), newEdgeType, directed );
// vnorene grafy
for ( QDomElement subgraphElement = edgeElement.firstChildElement( "graph" ); ok && !subgraphElement.isNull(); subgraphElement = subgraphElement.nextSiblingElement( "graph" ) ) {
if ( ok ) {
// TODO: begin subgraph in edge
}
if ( ok ) {
ok = processGraph( subgraphElement );
}
if ( ok ) {
// TODO: end subgraph in edge
}
}
entitiesProcessed_++;
context_->getInfoHandler().setProgress( static_cast<unsigned int>( entitiesProcessed_ * 100 / entitiesCount_ ) );
}
return ok;
}
void run(context_t& ctx, bool directed) {
bool is_master = ctx.dc.procid() == 0;
timer_start(is_master);
#ifdef GRANULA
granula::operation powergraphJob("PowerGraph", "Id.Unique", "Job", "Id.Unique");
granula::operation loadGraph("PowerGraph", "Id.Unique", "LoadGraph", "Id.Unique");
if(is_master) {
cout<<powergraphJob.getOperationInfo("StartTime", powergraphJob.getEpoch())<<endl;
cout<<loadGraph.getOperationInfo("StartTime", loadGraph.getEpoch())<<endl;
}
#endif
// process parmaeters
global_directed = directed;
// load graph
timer_next("load graph");
graph_type graph(ctx.dc);
load_graph(graph, ctx);
graph.finalize();
#ifdef GRANULA
if(is_master) {
cout<<loadGraph.getOperationInfo("EndTime", loadGraph.getEpoch())<<endl;
}
#endif
// start engine
timer_next("initialize engine");
graphlab::omni_engine<triangle_count> engine(ctx.dc, graph, "synchronous", ctx.clopts);
engine.signal_all();
#ifdef GRANULA
granula::operation processGraph("PowerGraph", "Id.Unique", "ProcessGraph", "Id.Unique");
if(is_master) {
cout<<processGraph.getOperationInfo("StartTime", processGraph.getEpoch())<<endl;
}
#endif
// run algorithm
timer_next("run algorithm");
engine.start();
#ifdef GRANULA
if(is_master) {
cout<<processGraph.getOperationInfo("EndTime", processGraph.getEpoch())<<endl;
}
#endif
#ifdef GRANULA
granula::operation offloadGraph("PowerGraph", "Id.Unique", "OffloadGraph", "Id.Unique");
if(is_master) {
cout<<offloadGraph.getOperationInfo("StartTime", offloadGraph.getEpoch())<<endl;
}
#endif
// print output
if (ctx.output_enabled) {
timer_next("print output");
vector<pair<graphlab::vertex_id_type, vertex_data_type> > data;
collect_vertex_data(graph, data, is_master);
for (size_t i = 0; i < data.size(); i++) {
(*ctx.output_stream) << data[i].first << " " << data[i].second.clustering_coef << endl;
}
}
timer_end();
#ifdef GRANULA
if(is_master) {
cout<<offloadGraph.getOperationInfo("EndTime", offloadGraph.getEpoch())<<endl;
cout<<powergraphJob.getOperationInfo("EndTime", powergraphJob.getEpoch())<<endl;
}
#endif
}
