AMD3Decoder::AMD3Decoder(const char *fname) : AMeshDecoder(fname)
{
init();
openFile(fname);
readHeader();
/*if(!errorFlag)*/ readBFrames();
/*if(!errorFlag)*/ readTags();
/*if(!errorFlag)*/ readMeshes();
}
int main(int argc, char* argv[])
{
ApplicationsLib::LogogSetup logog_setup;
TCLAP::CmdLine cmd(
"Checks if the subdomain meshes are part of the bulk mesh and writes "
"the 'bulk_node_ids' and the 'bulk_element_ids' in each of them.\n\n"
"OpenGeoSys-6 software, version " +
BaseLib::BuildInfo::git_describe +
".\n"
"Copyright (c) 2012-2019, OpenGeoSys Community "
"(http://www.opengeosys.org)",
' ', BaseLib::BuildInfo::git_describe);
TCLAP::ValueArg<bool> force_overwrite_arg(
"f",
"force",
"Overwrites the existing subdomain meshes. (default: do not "
"overwrite.)",
false,
false,
"true/false");
cmd.add(force_overwrite_arg);
TCLAP::ValueArg<std::string> output_prefix_arg(
"o",
"output_prefix",
"Prefix the subdomain meshes' filenames with the output prefix/path.",
false,
"",
"path");
cmd.add(output_prefix_arg);
TCLAP::ValueArg<double> search_length_arg(
"s",
"searchlength",
"search length determining radius for the node search algorithm. "
"Non-negative floating point number (default 1e-16) ",
false,
1e-16,
"float");
cmd.add(search_length_arg);
TCLAP::ValueArg<std::string> bulk_mesh_arg(
"m", "mesh", "the file name of the bulk mesh", true, "", "mesh file");
cmd.add(bulk_mesh_arg);
// All the remaining arguments are used as file names for boundary/subdomain
// meshes.
TCLAP::UnlabeledMultiArg<std::string> subdomain_meshes_filenames_arg(
"subdomain_meshes_filenames", "mesh file names.", true,
"subdomain mesh file");
cmd.add(subdomain_meshes_filenames_arg);
cmd.parse(argc, argv);
//
// The bulk mesh.
//
std::unique_ptr<MeshLib::Mesh> bulk_mesh{
MeshLib::IO::readMeshFromFile(bulk_mesh_arg.getValue())};
if (bulk_mesh == nullptr)
{
OGS_FATAL("Could not read bulk mesh from '%s'",
bulk_mesh_arg.getValue().c_str());
}
//
// Read the subdomain meshes.
//
auto const subdomain_meshes =
readMeshes(subdomain_meshes_filenames_arg.getValue());
//
// Bulk mesh node searcher.
//
auto const& mesh_node_searcher =
MeshGeoToolsLib::MeshNodeSearcher::getMeshNodeSearcher(
*bulk_mesh,
std::make_unique<MeshGeoToolsLib::SearchLength>(
search_length_arg.getValue()));
//
// Identify the subdomains in the bulk mesh.
//
for (auto& mesh_ptr : subdomain_meshes)
{
// If force overwrite is set or the output is to different mesh than
// the input mesh.
bool const overwrite_property_vectors =
force_overwrite_arg.getValue() ||
!output_prefix_arg.getValue().empty();
identifySubdomainMesh(*mesh_ptr, *bulk_mesh, mesh_node_searcher,
overwrite_property_vectors);
}
//
// Output after the successful subdomain mesh identification.
//
for (auto const& mesh_ptr : subdomain_meshes)
{
MeshLib::IO::writeMeshToFile(
*mesh_ptr,
output_prefix_arg.getValue() + mesh_ptr->getName() + ".vtu");
}
return EXIT_SUCCESS;
}
