MSAEditorConsensusArea::MSAEditorConsensusArea(MSAEditorUI *_ui)
: editor(_ui->editor), ui(_ui)
{
assert(editor->getMSAObject());
completeRedraw = true;
curPos = -1;
scribbling = false;
selecting = false;
cachedView = new QPixmap();
QObject *parent=new QObject(this);
parent->setObjectName("parent");
childObject = new QObject(parent);
connect(ui->seqArea, SIGNAL(si_startChanged(const QPoint &, const QPoint &)), SLOT(sl_startChanged(const QPoint &, const QPoint &)));
connect(ui->seqArea, SIGNAL(si_selectionChanged(const MSAEditorSelection &, const MSAEditorSelection &)),
SLOT(sl_selectionChanged(const MSAEditorSelection &, const MSAEditorSelection &)));
connect(ui->editor, SIGNAL(si_zoomOperationPerformed(bool)), SLOT(sl_zoomOperationPerformed(bool)));
connect(ui->seqArea->getHBar(), SIGNAL(actionTriggered(int)), SLOT(sl_onScrollBarActionTriggered(int)));
connect(editor->getMSAObject(), SIGNAL(si_alignmentChanged(const MAlignment &, const MAlignmentModInfo &)),
SLOT(sl_alignmentChanged(const MAlignment &, const MAlignmentModInfo &)));
connect(editor, SIGNAL(si_buildStaticMenu(GObjectView *, QMenu *)), SLOT(sl_buildStaticMenu(GObjectView *, QMenu *)));
connect(editor, SIGNAL(si_buildPopupMenu(GObjectView * , QMenu *)), SLOT(sl_buildContextMenu(GObjectView *, QMenu *)));
copyConsensusAction = new QAction(tr("Copy consensus"), this);
copyConsensusAction->setObjectName("Copy consensus");
connect(copyConsensusAction, SIGNAL(triggered()), SLOT(sl_copyConsensusSequence()));
copyConsensusWithGapsAction = new QAction(tr("Copy consensus with gaps"), this);
copyConsensusWithGapsAction->setObjectName("Copy consensus with gaps");
connect(copyConsensusWithGapsAction, SIGNAL(triggered()), SLOT(sl_copyConsensusSequenceWithGaps()));
configureConsensusAction = new QAction(tr("Consensus mode..."), this);
configureConsensusAction->setObjectName("Consensus mode");
connect(configureConsensusAction, SIGNAL(triggered()), SLOT(sl_configureConsensusAction()));
setupFontAndHeight();
setMouseTracking(true);
setFocusPolicy(Qt::StrongFocus);
MSAConsensusAlgorithmFactory* algo = getConsensusAlgorithmFactory();
consensusCache = QSharedPointer<MSAEditorConsensusCache>(new MSAEditorConsensusCache(NULL, editor->getMSAObject(), algo));
connect(consensusCache->getConsensusAlgorithm(), SIGNAL(si_thresholdChanged(int)), SLOT(sl_onConsensusThresholdChanged(int)));
addAction(ui->getCopySelectionAction());
addAction(ui->getPasteAction());
restoreLastUsedConsensusThreshold();
setObjectName("consArea");
}
MaEditorConsensusArea::MaEditorConsensusArea(MaEditorWgt *_ui)
: editor(_ui->getEditor()),
ui(_ui),
renderer(NULL)
{
assert(editor->getMaObject());
completeRedraw = true;
curPos = -1;
scribbling = false;
selecting = false;
cachedView = new QPixmap();
QObject *parent=new QObject(this);
parent->setObjectName("parent");
connect(ui->getSequenceArea(), SIGNAL(si_selectionChanged(const MaEditorSelection &, const MaEditorSelection &)),
SLOT(sl_selectionChanged(const MaEditorSelection &, const MaEditorSelection &)));
connect(ui->getEditor(), SIGNAL(si_zoomOperationPerformed(bool)), SLOT(sl_zoomOperationPerformed(bool)));
connect(ui, SIGNAL(si_completeRedraw()), SLOT(sl_completeRedraw()));
connect(editor->getMaObject(), SIGNAL(si_alignmentChanged(const MultipleAlignment &, const MaModificationInfo &)),
SLOT(sl_alignmentChanged()));
copyConsensusAction = new QAction(tr("Copy consensus"), this);
copyConsensusAction->setObjectName("Copy consensus");
connect(copyConsensusAction, SIGNAL(triggered()), SLOT(sl_copyConsensusSequence()));
copyConsensusWithGapsAction = new QAction(tr("Copy consensus with gaps"), this);
copyConsensusWithGapsAction->setObjectName("Copy consensus with gaps");
connect(copyConsensusWithGapsAction, SIGNAL(triggered()), SLOT(sl_copyConsensusSequenceWithGaps()));
configureConsensusAction = new QAction(tr("Consensus mode..."), this);
configureConsensusAction->setObjectName("Consensus mode");
connect(configureConsensusAction, SIGNAL(triggered()), SLOT(sl_configureConsensusAction()));
connect(editor, SIGNAL(si_fontChanged(QFont)), SLOT(setupFontAndHeight()));
setMouseTracking(true);
setFocusPolicy(Qt::StrongFocus);
MSAConsensusAlgorithmFactory* algo = getConsensusAlgorithmFactory();
consensusCache = QSharedPointer<MSAEditorConsensusCache>(new MSAEditorConsensusCache(NULL, editor->getMaObject(), algo));
connect(consensusCache->getConsensusAlgorithm(), SIGNAL(si_thresholdChanged(int)), SLOT(sl_onConsensusThresholdChanged(int)));
addAction(ui->getCopySelectionAction());
addAction(ui->getPasteAction());
restoreLastUsedConsensusThreshold();
setObjectName("consArea");
}
void MaEditorConsensusArea::setConsensusAlgorithm(MSAConsensusAlgorithmFactory* algoFactory) {
MSAConsensusAlgorithm* oldAlgo = getConsensusAlgorithm();
if (oldAlgo!=NULL && algoFactory == oldAlgo->getFactory()) {
return;
}
//store threshold for the active algo
if (oldAlgo!=NULL && oldAlgo->supportsThreshold()) {
AppContext::getSettings()->setValue(getThresholdSettingsKey(oldAlgo->getId()), oldAlgo->getThreshold());
}
//store current algorithm selection
AppContext::getSettings()->setValue(getLastUsedAlgoSettingsKey(), algoFactory->getId());
consensusCache->setConsensusAlgorithm(algoFactory);
connect(consensusCache->getConsensusAlgorithm(), SIGNAL(si_thresholdChanged(int)), SLOT(sl_onConsensusThresholdChanged(int)));
restoreLastUsedConsensusThreshold();
completeRedraw = true;
emit si_mismatchRedrawRequired();
update();
}
