/*************************************************************************
* This function is the entry point of the initial partition algorithm
* that does recursive bissection.
* This algorithm assembles the graph to all the processors and preceeds
* by parallelizing the recursive bisection step.
**************************************************************************/
void InitPartition(ctrl_t *ctrl, graph_t *graph)
{
idx_t i, j, ncon, mype, npes, gnvtxs, ngroups;
idx_t *xadj, *adjncy, *adjwgt, *vwgt;
idx_t *part, *gwhere0, *gwhere1;
idx_t *tmpwhere, *tmpvwgt, *tmpxadj, *tmpadjncy, *tmpadjwgt;
graph_t *agraph;
idx_t lnparts, fpart, fpe, lnpes;
idx_t twoparts=2, moptions[METIS_NOPTIONS], edgecut, max_cut;
real_t *tpwgts, *tpwgts2, *lbvec, lbsum, min_lbsum, wsum;
MPI_Comm ipcomm;
struct {
double sum;
int rank;
} lpesum, gpesum;
WCOREPUSH;
ncon = graph->ncon;
ngroups = gk_max(gk_min(RIP_SPLIT_FACTOR, ctrl->npes), 1);
IFSET(ctrl->dbglvl, DBG_TIME, gkMPI_Barrier(ctrl->comm));
IFSET(ctrl->dbglvl, DBG_TIME, starttimer(ctrl->InitPartTmr));
lbvec = rwspacemalloc(ctrl, ncon);
/* assemble the graph to all the processors */
agraph = AssembleAdaptiveGraph(ctrl, graph);
gnvtxs = agraph->nvtxs;
/* make a copy of the graph's structure for later */
xadj = icopy(gnvtxs+1, agraph->xadj, iwspacemalloc(ctrl, gnvtxs+1));
vwgt = icopy(gnvtxs*ncon, agraph->vwgt, iwspacemalloc(ctrl, gnvtxs*ncon));
adjncy = icopy(agraph->nedges, agraph->adjncy, iwspacemalloc(ctrl, agraph->nedges));
adjwgt = icopy(agraph->nedges, agraph->adjwgt, iwspacemalloc(ctrl, agraph->nedges));
part = iwspacemalloc(ctrl, gnvtxs);
/* create different processor groups */
gkMPI_Comm_split(ctrl->gcomm, ctrl->mype % ngroups, 0, &ipcomm);
gkMPI_Comm_rank(ipcomm, &mype);
gkMPI_Comm_size(ipcomm, &npes);
/* Go into the recursive bisection */
METIS_SetDefaultOptions(moptions);
moptions[METIS_OPTION_SEED] = ctrl->sync + (ctrl->mype % ngroups) + 1;
tpwgts = ctrl->tpwgts;
tpwgts2 = rwspacemalloc(ctrl, 2*ncon);
lnparts = ctrl->nparts;
fpart = fpe = 0;
lnpes = npes;
while (lnpes > 1 && lnparts > 1) {
/* determine the weights of the two partitions as a function of the
weight of the target partition weights */
for (j=(lnparts>>1), i=0; i<ncon; i++) {
tpwgts2[i] = rsum(j, tpwgts+fpart*ncon+i, ncon);
tpwgts2[ncon+i] = rsum(lnparts-j, tpwgts+(fpart+j)*ncon+i, ncon);
wsum = 1.0/(tpwgts2[i] + tpwgts2[ncon+i]);
tpwgts2[i] *= wsum;
tpwgts2[ncon+i] *= wsum;
}
METIS_PartGraphRecursive(&agraph->nvtxs, &ncon, agraph->xadj, agraph->adjncy,
agraph->vwgt, NULL, agraph->adjwgt, &twoparts, tpwgts2, NULL, moptions,
&edgecut, part);
/* pick one of the branches */
if (mype < fpe+lnpes/2) {
KeepPart(ctrl, agraph, part, 0);
lnpes = lnpes/2;
lnparts = lnparts/2;
}
else {
KeepPart(ctrl, agraph, part, 1);
fpart = fpart + lnparts/2;
fpe = fpe + lnpes/2;
lnpes = lnpes - lnpes/2;
lnparts = lnparts - lnparts/2;
}
}
gwhere0 = iset(gnvtxs, 0, iwspacemalloc(ctrl, gnvtxs));
gwhere1 = iwspacemalloc(ctrl, gnvtxs);
if (lnparts == 1) { /* Case npes is greater than or equal to nparts */
/* Only the first process will assign labels (for the reduction to work) */
if (mype == fpe) {
for (i=0; i<agraph->nvtxs; i++)
gwhere0[agraph->label[i]] = fpart;
}
}
else { /* Case in which npes is smaller than nparts */
/* create the normalized tpwgts for the lnparts from ctrl->tpwgts */
tpwgts = rwspacemalloc(ctrl, lnparts*ncon);
for (j=0; j<ncon; j++) {
for (wsum=0.0, i=0; i<lnparts; i++) {
tpwgts[i*ncon+j] = ctrl->tpwgts[(fpart+i)*ncon+j];
wsum += tpwgts[i*ncon+j];
}
for (wsum=1.0/wsum, i=0; i<lnparts; i++)
tpwgts[i*ncon+j] *= wsum;
}
METIS_PartGraphKway(&agraph->nvtxs, &ncon, agraph->xadj, agraph->adjncy,
agraph->vwgt, NULL, agraph->adjwgt, &lnparts, tpwgts, NULL, moptions,
&edgecut, part);
for (i=0; i<agraph->nvtxs; i++)
gwhere0[agraph->label[i]] = fpart + part[i];
}
gkMPI_Allreduce((void *)gwhere0, (void *)gwhere1, gnvtxs, IDX_T, MPI_SUM, ipcomm);
if (ngroups > 1) {
tmpxadj = agraph->xadj;
tmpadjncy = agraph->adjncy;
tmpadjwgt = agraph->adjwgt;
tmpvwgt = agraph->vwgt;
tmpwhere = agraph->where;
agraph->xadj = xadj;
agraph->adjncy = adjncy;
agraph->adjwgt = adjwgt;
agraph->vwgt = vwgt;
agraph->where = gwhere1;
agraph->vwgt = vwgt;
agraph->nvtxs = gnvtxs;
edgecut = ComputeSerialEdgeCut(agraph);
ComputeSerialBalance(ctrl, agraph, gwhere1, lbvec);
lbsum = rsum(ncon, lbvec, 1);
gkMPI_Allreduce((void *)&edgecut, (void *)&max_cut, 1, IDX_T, MPI_MAX, ctrl->gcomm);
gkMPI_Allreduce((void *)&lbsum, (void *)&min_lbsum, 1, REAL_T, MPI_MIN, ctrl->gcomm);
lpesum.sum = lbsum;
if (min_lbsum < UNBALANCE_FRACTION*ncon) {
if (lbsum < UNBALANCE_FRACTION*ncon)
lpesum.sum = edgecut;
else
lpesum.sum = max_cut;
}
lpesum.rank = ctrl->mype;
gkMPI_Allreduce((void *)&lpesum, (void *)&gpesum, 1, MPI_DOUBLE_INT,
MPI_MINLOC, ctrl->gcomm);
gkMPI_Bcast((void *)gwhere1, gnvtxs, IDX_T, gpesum.rank, ctrl->gcomm);
agraph->xadj = tmpxadj;
agraph->adjncy = tmpadjncy;
agraph->adjwgt = tmpadjwgt;
agraph->vwgt = tmpvwgt;
agraph->where = tmpwhere;
}
icopy(graph->nvtxs, gwhere1+graph->vtxdist[ctrl->mype], graph->where);
FreeGraph(agraph);
gkMPI_Comm_free(&ipcomm);
IFSET(ctrl->dbglvl, DBG_TIME, gkMPI_Barrier(ctrl->comm));
IFSET(ctrl->dbglvl, DBG_TIME, stoptimer(ctrl->InitPartTmr));
WCOREPOP;
}
void FM_Mc2WayCutRefine(ctrl_t *ctrl, graph_t *graph, real_t *ntpwgts, idx_t niter)
{
idx_t i, ii, j, k, l, kwgt, nvtxs, ncon, nbnd, nswaps, from, to, pass,
me, limit, tmp, cnum;
idx_t *xadj, *adjncy, *vwgt, *adjwgt, *pwgts, *where, *id, *ed,
*bndptr, *bndind;
idx_t *moved, *swaps, *perm, *qnum;
idx_t higain, mincut, initcut, newcut, mincutorder;
real_t *invtvwgt, *ubfactors, *minbalv, *newbalv;
real_t origbal, minbal, newbal, rgain, ffactor;
rpq_t **queues;
WCOREPUSH;
nvtxs = graph->nvtxs;
ncon = graph->ncon;
xadj = graph->xadj;
vwgt = graph->vwgt;
adjncy = graph->adjncy;
adjwgt = graph->adjwgt;
invtvwgt = graph->invtvwgt;
where = graph->where;
id = graph->id;
ed = graph->ed;
pwgts = graph->pwgts;
bndptr = graph->bndptr;
bndind = graph->bndind;
moved = iwspacemalloc(ctrl, nvtxs);
swaps = iwspacemalloc(ctrl, nvtxs);
perm = iwspacemalloc(ctrl, nvtxs);
qnum = iwspacemalloc(ctrl, nvtxs);
ubfactors = rwspacemalloc(ctrl, ncon);
newbalv = rwspacemalloc(ctrl, ncon);
minbalv = rwspacemalloc(ctrl, ncon);
limit = gk_min(gk_max(0.01*nvtxs, 25), 150);
/* Determine a fudge factor to allow the refinement routines to get out
of tight balancing constraints. */
ffactor = .5/gk_max(20, nvtxs);
/* Initialize the queues */
queues = (rpq_t **)wspacemalloc(ctrl, 2*ncon*sizeof(rpq_t *));
for (i=0; i<2*ncon; i++)
queues[i] = rpqCreate(nvtxs);
for (i=0; i<nvtxs; i++)
qnum[i] = iargmax_nrm(ncon, vwgt+i*ncon, invtvwgt);
/* Determine the unbalance tolerance for each constraint. The tolerance is
equal to the maximum of the original load imbalance and the user-supplied
allowed tolerance. The rationale behind this approach is to allow the
refinement routine to improve the cut, without having to worry about fixing
load imbalance problems. The load imbalance is addressed by the balancing
routines. */
origbal = ComputeLoadImbalanceDiffVec(graph, 2, ctrl->pijbm, ctrl->ubfactors, ubfactors);
for (i=0; i<ncon; i++)
ubfactors[i] = (ubfactors[i] > 0 ? ctrl->ubfactors[i]+ubfactors[i] : ctrl->ubfactors[i]);
IFSET(ctrl->dbglvl, METIS_DBG_REFINE,
Print2WayRefineStats(ctrl, graph, ntpwgts, origbal, -2));
iset(nvtxs, -1, moved);
for (pass=0; pass<niter; pass++) { /* Do a number of passes */
for (i=0; i<2*ncon; i++)
rpqReset(queues[i]);
mincutorder = -1;
newcut = mincut = initcut = graph->mincut;
minbal = ComputeLoadImbalanceDiffVec(graph, 2, ctrl->pijbm, ubfactors, minbalv);
ASSERT(ComputeCut(graph, where) == graph->mincut);
ASSERT(CheckBnd(graph));
/* Insert boundary nodes in the priority queues */
nbnd = graph->nbnd;
irandArrayPermute(nbnd, perm, nbnd/5, 1);
for (ii=0; ii<nbnd; ii++) {
i = bndind[perm[ii]];
ASSERT(ed[i] > 0 || id[i] == 0);
ASSERT(bndptr[i] != -1);
//rgain = 1.0*(ed[i]-id[i])/sqrt(vwgt[i*ncon+qnum[i]]+1);
//rgain = (ed[i]-id[i] > 0 ? 1.0*(ed[i]-id[i])/sqrt(vwgt[i*ncon+qnum[i]]+1) : ed[i]-id[i]);
rgain = ed[i]-id[i];
rpqInsert(queues[2*qnum[i]+where[i]], i, rgain);
}
for (nswaps=0; nswaps<nvtxs; nswaps++) {
SelectQueue(graph, ctrl->pijbm, ubfactors, queues, &from, &cnum);
to = (from+1)%2;
if (from == -1 || (higain = rpqGetTop(queues[2*cnum+from])) == -1)
break;
ASSERT(bndptr[higain] != -1);
newcut -= (ed[higain]-id[higain]);
iaxpy(ncon, 1, vwgt+higain*ncon, 1, pwgts+to*ncon, 1);
iaxpy(ncon, -1, vwgt+higain*ncon, 1, pwgts+from*ncon, 1);
newbal = ComputeLoadImbalanceDiffVec(graph, 2, ctrl->pijbm, ubfactors, newbalv);
if ((newcut < mincut && newbal <= ffactor) ||
(newcut == mincut && (newbal < minbal ||
(newbal == minbal && BetterBalance2Way(ncon, minbalv, newbalv))))) {
mincut = newcut;
minbal = newbal;
mincutorder = nswaps;
rcopy(ncon, newbalv, minbalv);
}
else if (nswaps-mincutorder > limit) { /* We hit the limit, undo last move */
newcut += (ed[higain]-id[higain]);
iaxpy(ncon, 1, vwgt+higain*ncon, 1, pwgts+from*ncon, 1);
iaxpy(ncon, -1, vwgt+higain*ncon, 1, pwgts+to*ncon, 1);
break;
}
where[higain] = to;
moved[higain] = nswaps;
swaps[nswaps] = higain;
if (ctrl->dbglvl&METIS_DBG_MOVEINFO) {
printf("Moved%6"PRIDX" from %"PRIDX"(%"PRIDX") Gain:%5"PRIDX", "
"Cut:%5"PRIDX", NPwgts:", higain, from, cnum, ed[higain]-id[higain], newcut);
for (l=0; l<ncon; l++)
printf("(%.3"PRREAL" %.3"PRREAL")", pwgts[l]*invtvwgt[l], pwgts[ncon+l]*invtvwgt[l]);
printf(" %+.3"PRREAL" LB: %.3"PRREAL"(%+.3"PRREAL")\n",
minbal, ComputeLoadImbalance(graph, 2, ctrl->pijbm), newbal);
}
/**************************************************************
* Update the id[i]/ed[i] values of the affected nodes
***************************************************************/
SWAP(id[higain], ed[higain], tmp);
if (ed[higain] == 0 && xadj[higain] < xadj[higain+1])
BNDDelete(nbnd, bndind, bndptr, higain);
for (j=xadj[higain]; j<xadj[higain+1]; j++) {
k = adjncy[j];
kwgt = (to == where[k] ? adjwgt[j] : -adjwgt[j]);
INC_DEC(id[k], ed[k], kwgt);
/* Update its boundary information and queue position */
if (bndptr[k] != -1) { /* If k was a boundary vertex */
if (ed[k] == 0) { /* Not a boundary vertex any more */
BNDDelete(nbnd, bndind, bndptr, k);
if (moved[k] == -1) /* Remove it if in the queues */
rpqDelete(queues[2*qnum[k]+where[k]], k);
}
else { /* If it has not been moved, update its position in the queue */
if (moved[k] == -1) {
//rgain = 1.0*(ed[k]-id[k])/sqrt(vwgt[k*ncon+qnum[k]]+1);
//rgain = (ed[k]-id[k] > 0 ?
// 1.0*(ed[k]-id[k])/sqrt(vwgt[k*ncon+qnum[k]]+1) : ed[k]-id[k]);
rgain = ed[k]-id[k];
rpqUpdate(queues[2*qnum[k]+where[k]], k, rgain);
}
}
}
else {
if (ed[k] > 0) { /* It will now become a boundary vertex */
BNDInsert(nbnd, bndind, bndptr, k);
if (moved[k] == -1) {
//rgain = 1.0*(ed[k]-id[k])/sqrt(vwgt[k*ncon+qnum[k]]+1);
//rgain = (ed[k]-id[k] > 0 ?
// 1.0*(ed[k]-id[k])/sqrt(vwgt[k*ncon+qnum[k]]+1) : ed[k]-id[k]);
rgain = ed[k]-id[k];
rpqInsert(queues[2*qnum[k]+where[k]], k, rgain);
}
}
}
}
}
/****************************************************************
* Roll back computations
*****************************************************************/
for (i=0; i<nswaps; i++)
moved[swaps[i]] = -1; /* reset moved array */
for (nswaps--; nswaps>mincutorder; nswaps--) {
higain = swaps[nswaps];
to = where[higain] = (where[higain]+1)%2;
SWAP(id[higain], ed[higain], tmp);
if (ed[higain] == 0 && bndptr[higain] != -1 && xadj[higain] < xadj[higain+1])
BNDDelete(nbnd, bndind, bndptr, higain);
else if (ed[higain] > 0 && bndptr[higain] == -1)
BNDInsert(nbnd, bndind, bndptr, higain);
iaxpy(ncon, 1, vwgt+higain*ncon, 1, pwgts+to*ncon, 1);
iaxpy(ncon, -1, vwgt+higain*ncon, 1, pwgts+((to+1)%2)*ncon, 1);
for (j=xadj[higain]; j<xadj[higain+1]; j++) {
k = adjncy[j];
kwgt = (to == where[k] ? adjwgt[j] : -adjwgt[j]);
INC_DEC(id[k], ed[k], kwgt);
if (bndptr[k] != -1 && ed[k] == 0)
BNDDelete(nbnd, bndind, bndptr, k);
if (bndptr[k] == -1 && ed[k] > 0)
BNDInsert(nbnd, bndind, bndptr, k);
}
}
graph->mincut = mincut;
graph->nbnd = nbnd;
IFSET(ctrl->dbglvl, METIS_DBG_REFINE,
Print2WayRefineStats(ctrl, graph, ntpwgts, minbal, mincutorder));
if (mincutorder <= 0 || mincut == initcut)
break;
}
for (i=0; i<2*ncon; i++)
rpqDestroy(queues[i]);
WCOREPOP;
}
void Adaptive_Partition(ctrl_t *ctrl, graph_t *graph)
{
idx_t i;
idx_t tewgt, tvsize;
real_t gtewgt, gtvsize;
real_t ubavg, lbavg, *lbvec;
WCOREPUSH;
lbvec = rwspacemalloc(ctrl, graph->ncon);
/************************************/
/* Set up important data structures */
/************************************/
CommSetup(ctrl, graph);
ubavg = ravg(graph->ncon, ctrl->ubvec);
tewgt = isum(graph->nedges, graph->adjwgt, 1);
tvsize = isum(graph->nvtxs, graph->vsize, 1);
gtewgt = (real_t) GlobalSESum(ctrl, tewgt) + 1.0/graph->gnvtxs; /* The +1/graph->gnvtxs were added to remove any FPE */
gtvsize = (real_t) GlobalSESum(ctrl, tvsize) + 1.0/graph->gnvtxs;
ctrl->redist_factor = ctrl->redist_base * ((gtewgt/gtvsize)/ ctrl->edge_size_ratio);
IFSET(ctrl->dbglvl, DBG_PROGRESS, rprintf(ctrl, "[%6"PRIDX" %8"PRIDX" %5"PRIDX" %5"PRIDX"][%"PRIDX"]\n",
graph->gnvtxs, GlobalSESum(ctrl, graph->nedges), GlobalSEMin(ctrl, graph->nvtxs), GlobalSEMax(ctrl, graph->nvtxs), ctrl->CoarsenTo));
if (graph->gnvtxs < 1.3*ctrl->CoarsenTo ||
(graph->finer != NULL && graph->gnvtxs > graph->finer->gnvtxs*COARSEN_FRACTION)) {
AllocateRefinementWorkSpace(ctrl, 2*graph->nedges);
/***********************************************/
/* Balance the partition on the coarsest graph */
/***********************************************/
graph->where = ismalloc(graph->nvtxs+graph->nrecv, -1, "graph->where");
icopy(graph->nvtxs, graph->home, graph->where);
ComputeParallelBalance(ctrl, graph, graph->where, lbvec);
lbavg = ravg(graph->ncon, lbvec);
if (lbavg > ubavg + 0.035 && ctrl->partType != REFINE_PARTITION)
Balance_Partition(ctrl, graph);
if (ctrl->dbglvl&DBG_PROGRESS) {
ComputePartitionParams(ctrl, graph);
ComputeParallelBalance(ctrl, graph, graph->where, lbvec);
rprintf(ctrl, "nvtxs: %10"PRIDX", cut: %8"PRIDX", balance: ",
graph->gnvtxs, graph->mincut);
for (i=0; i<graph->ncon; i++)
rprintf(ctrl, "%.3"PRREAL" ", lbvec[i]);
rprintf(ctrl, "\n");
/* free memory allocated by ComputePartitionParams */
gk_free((void **)&graph->ckrinfo, &graph->lnpwgts, &graph->gnpwgts, LTERM);
}
/* check if no coarsening took place */
if (graph->finer == NULL) {
ComputePartitionParams(ctrl, graph);
KWayBalance(ctrl, graph, graph->ncon);
KWayAdaptiveRefine(ctrl, graph, NGR_PASSES);
}
}
else {
/*******************************/
/* Coarsen it and partition it */
/*******************************/
switch (ctrl->ps_relation) {
case PARMETIS_PSR_COUPLED:
Match_Local(ctrl, graph);
break;
case PARMETIS_PSR_UNCOUPLED:
default:
Match_Global(ctrl, graph);
break;
}
Adaptive_Partition(ctrl, graph->coarser);
/********************************/
/* project partition and refine */
/********************************/
ProjectPartition(ctrl, graph);
ComputePartitionParams(ctrl, graph);
if (graph->ncon > 1 && graph->level < 4) {
ComputeParallelBalance(ctrl, graph, graph->where, lbvec);
lbavg = ravg(graph->ncon, lbvec);
if (lbavg > ubavg + 0.025) {
KWayBalance(ctrl, graph, graph->ncon);
}
}
KWayAdaptiveRefine(ctrl, graph, NGR_PASSES);
if (ctrl->dbglvl&DBG_PROGRESS) {
ComputeParallelBalance(ctrl, graph, graph->where, lbvec);
rprintf(ctrl, "nvtxs: %10"PRIDX", cut: %8"PRIDX", balance: ",
graph->gnvtxs, graph->mincut);
for (i=0; i<graph->ncon; i++)
rprintf(ctrl, "%.3"PRREAL" ", lbvec[i]);
rprintf(ctrl, "\n");
}
}
WCOREPOP;
}
/*************************************************************************
* This function is the entry point of the initial partitioning algorithm.
* This algorithm assembles the graph to all the processors and preceed
* serially.
**************************************************************************/
idx_t Mc_Diffusion(ctrl_t *ctrl, graph_t *graph, idx_t *vtxdist, idx_t *where,
idx_t *home, idx_t npasses)
{
idx_t h, i, j;
idx_t nvtxs, nedges, ncon, pass, iter, domain, processor;
idx_t nparts, mype, npes, nlinks, me, you, wsize;
idx_t nvisited, nswaps = -1, tnswaps, done, alldone = -1;
idx_t *rowptr, *colind, *diff_where, *sr_where, *ehome, *map, *rmap;
idx_t *pack, *unpack, *match, *proc2sub, *sub2proc;
idx_t *visited, *gvisited;
real_t *transfer, *npwgts, maxdiff, minflow, maxflow;
real_t lbavg, oldlbavg, ubavg, *lbvec;
real_t *diff_flows, *sr_flows;
real_t diff_lbavg, sr_lbavg, diff_cost, sr_cost;
idx_t *rbuffer, *sbuffer;
idx_t *rcount, *rdispl;
real_t *solution, *load, *workspace;
matrix_t matrix;
graph_t *egraph;
if (graph->ncon > 3)
return 0;
WCOREPUSH;
nvtxs = graph->nvtxs;
nedges = graph->nedges;
ncon = graph->ncon;
nparts = ctrl->nparts;
mype = ctrl->mype;
npes = ctrl->npes;
ubavg = ravg(ncon, ctrl->ubvec);
/* initialize variables and allocate memory */
lbvec = rwspacemalloc(ctrl, ncon);
diff_flows = rwspacemalloc(ctrl, ncon);
sr_flows = rwspacemalloc(ctrl, ncon);
load = rwspacemalloc(ctrl, nparts);
solution = rwspacemalloc(ctrl, nparts);
npwgts = graph->gnpwgts = rwspacemalloc(ctrl, ncon*nparts);
matrix.values = rwspacemalloc(ctrl, nedges);
transfer = matrix.transfer = rwspacemalloc(ctrl, ncon*nedges);
proc2sub = iwspacemalloc(ctrl, gk_max(nparts, npes*2));
sub2proc = iwspacemalloc(ctrl, nparts);
match = iwspacemalloc(ctrl, nparts);
rowptr = matrix.rowptr = iwspacemalloc(ctrl, nparts+1);
colind = matrix.colind = iwspacemalloc(ctrl, nedges);
rcount = iwspacemalloc(ctrl, npes);
rdispl = iwspacemalloc(ctrl, npes+1);
pack = iwspacemalloc(ctrl, nvtxs);
unpack = iwspacemalloc(ctrl, nvtxs);
rbuffer = iwspacemalloc(ctrl, nvtxs);
sbuffer = iwspacemalloc(ctrl, nvtxs);
map = iwspacemalloc(ctrl, nvtxs);
rmap = iwspacemalloc(ctrl, nvtxs);
diff_where = iwspacemalloc(ctrl, nvtxs);
ehome = iwspacemalloc(ctrl, nvtxs);
wsize = gk_max(sizeof(real_t)*nparts*6, sizeof(idx_t)*(nvtxs+nparts*2+1));
workspace = (real_t *)gk_malloc(wsize, "Mc_Diffusion: workspace");
graph->ckrinfo = (ckrinfo_t *)gk_malloc(nvtxs*sizeof(ckrinfo_t), "Mc_Diffusion: rinfo");
/* construct subdomain connectivity graph */
matrix.nrows = nparts;
SetUpConnectGraph(graph, &matrix, (idx_t *)workspace);
nlinks = (matrix.nnzs-nparts) / 2;
visited = iwspacemalloc(ctrl, matrix.nnzs);
gvisited = iwspacemalloc(ctrl, matrix.nnzs);
for (pass=0; pass<npasses; pass++) {
rset(matrix.nnzs*ncon, 0.0, transfer);
iset(matrix.nnzs, 0, gvisited);
iset(matrix.nnzs, 0, visited);
iter = nvisited = 0;
/* compute ncon flow solutions */
for (h=0; h<ncon; h++) {
rset(nparts, 0.0, solution);
ComputeLoad(graph, nparts, load, ctrl->tpwgts, h);
lbvec[h] = (rmax(nparts, load)+1.0/nparts) * (real_t)nparts;
ConjGrad2(&matrix, load, solution, 0.001, workspace);
ComputeTransferVector(ncon, &matrix, solution, transfer, h);
}
oldlbavg = ravg(ncon, lbvec);
tnswaps = 0;
maxdiff = 0.0;
for (i=0; i<nparts; i++) {
for (j=rowptr[i]; j<rowptr[i+1]; j++) {
maxflow = rmax(ncon, transfer+j*ncon);
minflow = rmin(ncon, transfer+j*ncon);
maxdiff = (maxflow - minflow > maxdiff) ? maxflow - minflow : maxdiff;
}
}
while (nvisited < nlinks) {
/* compute independent sets of subdomains */
iset(gk_max(nparts, npes*2), UNMATCHED, proc2sub);
CSR_Match_SHEM(&matrix, match, proc2sub, gvisited, ncon);
/* set up the packing arrays */
iset(nparts, UNMATCHED, sub2proc);
for (i=0; i<npes*2; i++) {
if (proc2sub[i] == UNMATCHED)
break;
sub2proc[proc2sub[i]] = i/2;
}
iset(npes, 0, rcount);
for (i=0; i<nvtxs; i++) {
domain = where[i];
processor = sub2proc[domain];
if (processor != UNMATCHED)
rcount[processor]++;
}
rdispl[0] = 0;
for (i=1; i<npes+1; i++)
rdispl[i] = rdispl[i-1] + rcount[i-1];
iset(nvtxs, UNMATCHED, unpack);
for (i=0; i<nvtxs; i++) {
domain = where[i];
processor = sub2proc[domain];
if (processor != UNMATCHED)
unpack[rdispl[processor]++] = i;
}
SHIFTCSR(i, npes, rdispl);
iset(nvtxs, UNMATCHED, pack);
for (i=0; i<rdispl[npes]; i++) {
ASSERT(unpack[i] != UNMATCHED);
domain = where[unpack[i]];
processor = sub2proc[domain];
if (processor != UNMATCHED)
pack[unpack[i]] = i;
}
/* Compute the flows */
if (proc2sub[mype*2] != UNMATCHED) {
me = proc2sub[2*mype];
you = proc2sub[2*mype+1];
ASSERT(me != you);
for (j=rowptr[me]; j<rowptr[me+1]; j++) {
if (colind[j] == you) {
visited[j] = 1;
rcopy(ncon, transfer+j*ncon, diff_flows);
break;
}
}
for (j=rowptr[you]; j<rowptr[you+1]; j++) {
if (colind[j] == me) {
visited[j] = 1;
for (h=0; h<ncon; h++) {
if (transfer[j*ncon+h] > 0.0)
diff_flows[h] = -1.0 * transfer[j*ncon+h];
}
break;
}
}
nswaps = 1;
rcopy(ncon, diff_flows, sr_flows);
iset(nvtxs, 0, sbuffer);
for (i=0; i<nvtxs; i++) {
if (where[i] == me || where[i] == you)
sbuffer[i] = 1;
}
egraph = ExtractGraph(ctrl, graph, sbuffer, map, rmap);
if (egraph != NULL) {
icopy(egraph->nvtxs, egraph->where, diff_where);
for (j=0; j<egraph->nvtxs; j++)
ehome[j] = home[map[j]];
RedoMyLink(ctrl, egraph, ehome, me, you, sr_flows, &sr_cost, &sr_lbavg);
if (ncon <= 4) {
sr_where = egraph->where;
egraph->where = diff_where;
nswaps = BalanceMyLink(ctrl, egraph, ehome, me, you, diff_flows, maxdiff,
&diff_cost, &diff_lbavg, 1.0/(real_t)nvtxs);
if ((sr_lbavg < diff_lbavg &&
(diff_lbavg >= ubavg-1.0 || sr_cost == diff_cost)) ||
(sr_lbavg < ubavg-1.0 && sr_cost < diff_cost)) {
for (i=0; i<egraph->nvtxs; i++)
where[map[i]] = sr_where[i];
}
else {
for (i=0; i<egraph->nvtxs; i++)
where[map[i]] = diff_where[i];
}
}
else {
for (i=0; i<egraph->nvtxs; i++)
where[map[i]] = egraph->where[i];
}
gk_free((void **)&egraph->xadj, &egraph->nvwgt, &egraph->adjncy, &egraph, LTERM);
}
/* Pack the flow data */
iset(nvtxs, UNMATCHED, sbuffer);
for (i=0; i<nvtxs; i++) {
domain = where[i];
if (domain == you || domain == me)
sbuffer[pack[i]] = where[i];
}
}
/* Broadcast the flow data */
gkMPI_Allgatherv((void *)&sbuffer[rdispl[mype]], rcount[mype], IDX_T,
(void *)rbuffer, rcount, rdispl, IDX_T, ctrl->comm);
/* Unpack the flow data */
for (i=0; i<rdispl[npes]; i++) {
if (rbuffer[i] != UNMATCHED)
where[unpack[i]] = rbuffer[i];
}
/* Do other stuff */
gkMPI_Allreduce((void *)visited, (void *)gvisited, matrix.nnzs,
IDX_T, MPI_MAX, ctrl->comm);
nvisited = isum(matrix.nnzs, gvisited, 1)/2;
tnswaps += GlobalSESum(ctrl, nswaps);
if (iter++ == NGD_PASSES)
break;
}
/* perform serial refinement */
Mc_ComputeSerialPartitionParams(ctrl, graph, nparts);
Mc_SerialKWayAdaptRefine(ctrl, graph, nparts, home, ctrl->ubvec, 10);
/* check for early breakout */
for (h=0; h<ncon; h++) {
lbvec[h] = (real_t)(nparts) *
npwgts[rargmax_strd(nparts,npwgts+h,ncon)*ncon+h];
}
lbavg = ravg(ncon, lbvec);
done = 0;
if (tnswaps == 0 || lbavg >= oldlbavg || lbavg <= ubavg + 0.035)
done = 1;
alldone = GlobalSEMax(ctrl, done);
if (alldone == 1)
break;
}
/* ensure that all subdomains have at least one vertex */
/*
iset(nparts, 0, match);
for (i=0; i<nvtxs; i++)
match[where[i]]++;
done = 0;
while (done == 0) {
done = 1;
me = iargmin(nparts, match);
if (match[me] == 0) {
if (ctrl->mype == PE) printf("WARNING: empty subdomain %"PRIDX" in Mc_Diffusion\n", me);
you = iargmax(nparts, match);
for (i=0; i<nvtxs; i++) {
if (where[i] == you) {
where[i] = me;
match[you]--;
match[me]++;
done = 0;
break;
}
}
}
}
*/
/* now free memory and return */
gk_free((void **)&workspace, (void **)&graph->ckrinfo, LTERM);
graph->gnpwgts = NULL;
graph->ckrinfo = NULL;
WCOREPOP;
return 0;
}
/*************************************************************************
* This function is the entry point of the initial balancing algorithm.
* This algorithm assembles the graph to all the processors and preceeds
* with the balancing step.
**************************************************************************/
void Balance_Partition(ctrl_t *ctrl, graph_t *graph)
{
idx_t i, j, nvtxs, nedges, ncon;
idx_t mype, npes, srnpes, srmype;
idx_t *vtxdist, *xadj, *adjncy, *adjwgt, *vwgt, *vsize;
idx_t *part, *lwhere, *home;
idx_t lnparts, fpart, fpe, lnpes, ngroups;
idx_t *rcounts, *rdispls;
idx_t twoparts=2, moptions[METIS_NOPTIONS], edgecut, max_cut;
idx_t sr_pe, gd_pe, sr, gd, who_wins;
real_t my_cut, my_totalv, my_cost = -1.0, my_balance = -1.0, wsum;
real_t rating, max_rating, your_cost = -1.0, your_balance = -1.0;
real_t lbsum, min_lbsum, *lbvec, *tpwgts, *tpwgts2, buffer[2];
graph_t *agraph, cgraph;
ctrl_t *myctrl;
MPI_Status status;
MPI_Comm ipcomm, srcomm;
struct {
double cost;
int rank;
} lpecost, gpecost;
IFSET(ctrl->dbglvl, DBG_TIME, starttimer(ctrl->InitPartTmr));
WCOREPUSH;
vtxdist = graph->vtxdist;
agraph = AssembleAdaptiveGraph(ctrl, graph);
nvtxs = cgraph.nvtxs = agraph->nvtxs;
nedges = cgraph.nedges = agraph->nedges;
ncon = cgraph.ncon = agraph->ncon;
xadj = cgraph.xadj = icopy(nvtxs+1, agraph->xadj, iwspacemalloc(ctrl, nvtxs+1));
vwgt = cgraph.vwgt = icopy(nvtxs*ncon, agraph->vwgt, iwspacemalloc(ctrl, nvtxs*ncon));
vsize = cgraph.vsize = icopy(nvtxs, agraph->vsize, iwspacemalloc(ctrl, nvtxs));
adjncy = cgraph.adjncy = icopy(nedges, agraph->adjncy, iwspacemalloc(ctrl, nedges));
adjwgt = cgraph.adjwgt = icopy(nedges, agraph->adjwgt, iwspacemalloc(ctrl, nedges));
part = cgraph.where = agraph->where = iwspacemalloc(ctrl, nvtxs);
lwhere = iwspacemalloc(ctrl, nvtxs);
home = iwspacemalloc(ctrl, nvtxs);
lbvec = rwspacemalloc(ctrl, graph->ncon);
/****************************************/
/****************************************/
if (ctrl->ps_relation == PARMETIS_PSR_UNCOUPLED) {
WCOREPUSH;
rcounts = iwspacemalloc(ctrl, ctrl->npes);
rdispls = iwspacemalloc(ctrl, ctrl->npes+1);
for (i=0; i<ctrl->npes; i++)
rdispls[i] = rcounts[i] = vtxdist[i+1]-vtxdist[i];
MAKECSR(i, ctrl->npes, rdispls);
gkMPI_Allgatherv((void *)graph->home, graph->nvtxs, IDX_T,
(void *)part, rcounts, rdispls, IDX_T, ctrl->comm);
for (i=0; i<agraph->nvtxs; i++)
home[i] = part[i];
WCOREPOP; /* local frees */
}
else {
for (i=0; i<ctrl->npes; i++) {
for (j=vtxdist[i]; j<vtxdist[i+1]; j++)
part[j] = home[j] = i;
}
}
/* Ensure that the initial partitioning is legal */
for (i=0; i<agraph->nvtxs; i++) {
if (part[i] >= ctrl->nparts)
part[i] = home[i] = part[i] % ctrl->nparts;
if (part[i] < 0)
part[i] = home[i] = (-1*part[i]) % ctrl->nparts;
}
/****************************************/
/****************************************/
IFSET(ctrl->dbglvl, DBG_REFINEINFO,
ComputeSerialBalance(ctrl, agraph, agraph->where, lbvec));
IFSET(ctrl->dbglvl, DBG_REFINEINFO,
rprintf(ctrl, "input cut: %"PRIDX", balance: ", ComputeSerialEdgeCut(agraph)));
for (i=0; i<agraph->ncon; i++)
IFSET(ctrl->dbglvl, DBG_REFINEINFO, rprintf(ctrl, "%.3"PRREAL" ", lbvec[i]));
IFSET(ctrl->dbglvl, DBG_REFINEINFO, rprintf(ctrl, "\n"));
/****************************************/
/* Split the processors into two groups */
/****************************************/
sr = (ctrl->mype % 2 == 0) ? 1 : 0;
gd = (ctrl->mype % 2 == 1) ? 1 : 0;
if (graph->ncon > MAX_NCON_FOR_DIFFUSION || ctrl->npes == 1) {
sr = 1;
gd = 0;
}
sr_pe = 0;
gd_pe = 1;
gkMPI_Comm_split(ctrl->gcomm, sr, 0, &ipcomm);
gkMPI_Comm_rank(ipcomm, &mype);
gkMPI_Comm_size(ipcomm, &npes);
if (sr == 1) { /* Half of the processors do scratch-remap */
ngroups = gk_max(gk_min(RIP_SPLIT_FACTOR, npes), 1);
gkMPI_Comm_split(ipcomm, mype % ngroups, 0, &srcomm);
gkMPI_Comm_rank(srcomm, &srmype);
gkMPI_Comm_size(srcomm, &srnpes);
METIS_SetDefaultOptions(moptions);
moptions[METIS_OPTION_SEED] = ctrl->sync + (mype % ngroups) + 1;
tpwgts = ctrl->tpwgts;
tpwgts2 = rwspacemalloc(ctrl, 2*ncon);
iset(nvtxs, 0, lwhere);
lnparts = ctrl->nparts;
fpart = fpe = 0;
lnpes = srnpes;
while (lnpes > 1 && lnparts > 1) {
PASSERT(ctrl, agraph->nvtxs > 1);
/* determine the weights of the two partitions as a function of the
weight of the target partition weights */
for (j=(lnparts>>1), i=0; i<ncon; i++) {
tpwgts2[i] = rsum(j, tpwgts+fpart*ncon+i, ncon);
tpwgts2[ncon+i] = rsum(lnparts-j, tpwgts+(fpart+j)*ncon+i, ncon);
wsum = 1.0/(tpwgts2[i] + tpwgts2[ncon+i]);
tpwgts2[i] *= wsum;
tpwgts2[ncon+i] *= wsum;
}
METIS_PartGraphRecursive(&agraph->nvtxs, &ncon, agraph->xadj,
agraph->adjncy, agraph->vwgt, NULL, agraph->adjwgt,
&twoparts, tpwgts2, NULL, moptions, &edgecut, part);
/* pick one of the branches */
if (srmype < fpe+lnpes/2) {
KeepPart(ctrl, agraph, part, 0);
lnpes = lnpes/2;
lnparts = lnparts/2;
}
else {
KeepPart(ctrl, agraph, part, 1);
fpart = fpart + lnparts/2;
fpe = fpe + lnpes/2;
lnpes = lnpes - lnpes/2;
lnparts = lnparts - lnparts/2;
}
}
if (lnparts == 1) { /* Case in which srnpes is greater or equal to nparts */
/* Only the first process will assign labels (for the reduction to work) */
if (srmype == fpe) {
for (i=0; i<agraph->nvtxs; i++)
lwhere[agraph->label[i]] = fpart;
}
}
else { /* Case in which srnpes is smaller than nparts */
/* create the normalized tpwgts for the lnparts from ctrl->tpwgts */
tpwgts = rwspacemalloc(ctrl, lnparts*ncon);
for (j=0; j<ncon; j++) {
for (wsum=0.0, i=0; i<lnparts; i++) {
tpwgts[i*ncon+j] = ctrl->tpwgts[(fpart+i)*ncon+j];
wsum += tpwgts[i*ncon+j];
}
for (wsum=1.0/wsum, i=0; i<lnparts; i++)
tpwgts[i*ncon+j] *= wsum;
}
METIS_PartGraphKway(&agraph->nvtxs, &ncon, agraph->xadj, agraph->adjncy,
agraph->vwgt, NULL, agraph->adjwgt, &lnparts, tpwgts, NULL, moptions,
&edgecut, part);
for (i=0; i<agraph->nvtxs; i++)
lwhere[agraph->label[i]] = fpart + part[i];
}
gkMPI_Allreduce((void *)lwhere, (void *)part, nvtxs, IDX_T, MPI_SUM, srcomm);
edgecut = ComputeSerialEdgeCut(&cgraph);
ComputeSerialBalance(ctrl, &cgraph, part, lbvec);
lbsum = rsum(ncon, lbvec, 1);
gkMPI_Allreduce((void *)&edgecut, (void *)&max_cut, 1, IDX_T, MPI_MAX, ipcomm);
gkMPI_Allreduce((void *)&lbsum, (void *)&min_lbsum, 1, REAL_T, MPI_MIN, ipcomm);
lpecost.rank = ctrl->mype;
lpecost.cost = lbsum;
if (min_lbsum < UNBALANCE_FRACTION * (real_t)(ncon)) {
if (lbsum < UNBALANCE_FRACTION * (real_t)(ncon))
lpecost.cost = (double)edgecut;
else
lpecost.cost = (double)max_cut + lbsum;
}
gkMPI_Allreduce((void *)&lpecost, (void *)&gpecost, 1, MPI_DOUBLE_INT,
MPI_MINLOC, ipcomm);
if (ctrl->mype == gpecost.rank && ctrl->mype != sr_pe)
gkMPI_Send((void *)part, nvtxs, IDX_T, sr_pe, 1, ctrl->comm);
if (ctrl->mype != gpecost.rank && ctrl->mype == sr_pe)
gkMPI_Recv((void *)part, nvtxs, IDX_T, gpecost.rank, 1, ctrl->comm, &status);
if (ctrl->mype == sr_pe) {
icopy(nvtxs, part, lwhere);
SerialRemap(ctrl, &cgraph, ctrl->nparts, home, lwhere, part, ctrl->tpwgts);
}
gkMPI_Comm_free(&srcomm);
}
/*************************************************************************
* This function performs an edge-based FM refinement
**************************************************************************/
void RedoMyLink(ctrl_t *ctrl, graph_t *graph, idx_t *home, idx_t me,
idx_t you, real_t *flows, real_t *sr_cost, real_t *sr_lbavg)
{
idx_t h, i, r;
idx_t nvtxs, nedges, ncon;
idx_t pass, lastseed, totalv;
idx_t *xadj, *adjncy, *adjwgt, *where, *vsize;
idx_t *costwhere, *lbwhere, *selectwhere;
idx_t *ed, *id, *bndptr, *bndind, *perm;
real_t *nvwgt, mycost;
real_t lbavg, *lbvec;
real_t best_lbavg, other_lbavg = -1.0, bestcost, othercost = -1.0;
real_t *npwgts, *pwgts, *tpwgts;
real_t ipc_factor, redist_factor, ftmp;
idx_t mype;
gkMPI_Comm_rank(MPI_COMM_WORLD, &mype);
WCOREPUSH;
nvtxs = graph->nvtxs;
nedges = graph->nedges;
ncon = graph->ncon;
xadj = graph->xadj;
nvwgt = graph->nvwgt;
vsize = graph->vsize;
adjncy = graph->adjncy;
adjwgt = graph->adjwgt;
where = graph->where;
ipc_factor = ctrl->ipc_factor;
redist_factor = ctrl->redist_factor;
/* set up data structures */
id = graph->sendind = iwspacemalloc(ctrl, nvtxs);
ed = graph->recvind = iwspacemalloc(ctrl, nvtxs);
bndptr = graph->sendptr = iwspacemalloc(ctrl, nvtxs);
bndind = graph->recvptr = iwspacemalloc(ctrl, nvtxs);
costwhere = iwspacemalloc(ctrl, nvtxs);
lbwhere = iwspacemalloc(ctrl, nvtxs);
perm = iwspacemalloc(ctrl, nvtxs);
lbvec = rwspacemalloc(ctrl, ncon);
pwgts = rset(2*ncon, 0.0, rwspacemalloc(ctrl, 2*ncon));
npwgts = rwspacemalloc(ctrl, 2*ncon);
tpwgts = rwspacemalloc(ctrl, 2*ncon);
graph->gnpwgts = npwgts;
RandomPermute(nvtxs, perm, 1);
icopy(nvtxs, where, costwhere);
icopy(nvtxs, where, lbwhere);
/* compute target pwgts */
for (h=0; h<ncon; h++) {
tpwgts[h] = -1.0*flows[h];
tpwgts[ncon+h] = flows[h];
}
for (i=0; i<nvtxs; i++) {
if (where[i] == me) {
for (h=0; h<ncon; h++) {
tpwgts[h] += nvwgt[i*ncon+h];
pwgts[h] += nvwgt[i*ncon+h];
}
}
else {
ASSERT(where[i] == you);
for (h=0; h<ncon; h++) {
tpwgts[ncon+h] += nvwgt[i*ncon+h];
pwgts[ncon+h] += nvwgt[i*ncon+h];
}
}
}
/* we don't want any weights to be less than zero */
for (h=0; h<ncon; h++) {
if (tpwgts[h] < 0.0) {
tpwgts[ncon+h] += tpwgts[h];
tpwgts[h] = 0.0;
}
if (tpwgts[ncon+h] < 0.0) {
tpwgts[h] += tpwgts[ncon+h];
tpwgts[ncon+h] = 0.0;
}
}
/* now compute new bisection */
bestcost = (real_t)isum(nedges, adjwgt, 1)*ipc_factor +
(real_t)isum(nvtxs, vsize, 1)*redist_factor;
best_lbavg = 10.0;
lastseed = 0;
for (pass=N_MOC_REDO_PASSES; pass>0; pass--) {
iset(nvtxs, 1, where);
/* find seed vertices */
r = perm[lastseed] % nvtxs;
lastseed = (lastseed+1) % nvtxs;
where[r] = 0;
Mc_Serial_Compute2WayPartitionParams(ctrl, graph);
Mc_Serial_Init2WayBalance(ctrl, graph, tpwgts);
Mc_Serial_FM_2WayRefine(ctrl, graph, tpwgts, 4);
Mc_Serial_Balance2Way(ctrl, graph, tpwgts, 1.02);
Mc_Serial_FM_2WayRefine(ctrl, graph, tpwgts, 4);
for (i=0; i<nvtxs; i++)
where[i] = (where[i] == 0) ? me : you;
for (i=0; i<ncon; i++) {
ftmp = (pwgts[i]+pwgts[ncon+i])/2.0;
if (ftmp != 0.0)
lbvec[i] = fabs(npwgts[i]-tpwgts[i])/ftmp;
else
lbvec[i] = 0.0;
}
lbavg = ravg(ncon, lbvec);
totalv = 0;
for (i=0; i<nvtxs; i++)
if (where[i] != home[i])
totalv += vsize[i];
mycost = (real_t)(graph->mincut)*ipc_factor + (real_t)totalv*redist_factor;
if (bestcost >= mycost) {
bestcost = mycost;
other_lbavg = lbavg;
icopy(nvtxs, where, costwhere);
}
if (best_lbavg >= lbavg) {
best_lbavg = lbavg;
othercost = mycost;
icopy(nvtxs, where, lbwhere);
}
}
if (other_lbavg <= .05) {
selectwhere = costwhere;
*sr_cost = bestcost;
*sr_lbavg = other_lbavg;
}
else {
selectwhere = lbwhere;
*sr_cost = othercost;
*sr_lbavg = best_lbavg;
}
icopy(nvtxs, selectwhere, where);
WCOREPOP;
}
