// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AlignSectionsFeatureCentroid::dataCheck()
{
setErrorCondition(0);
// Set the DataContainerName and AttributematrixName for the Parent Class (AlignSections) to Use.
// These are checked for validity in the Parent Class dataCheck
setDataContainerName(m_GoodVoxelsArrayPath.getDataContainerName());
setCellAttributeMatrixName(m_GoodVoxelsArrayPath.getAttributeMatrixName());
AlignSections::dataCheck();
if(getErrorCondition() < 0) { return; }
ImageGeom::Pointer image = getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, m_GoodVoxelsArrayPath.getDataContainerName());
if(getErrorCondition() < 0) { return; }
if (m_ReferenceSlice > image->getZPoints())
{
QString ss = QObject::tr("The Image Geometry extent (%1) is smaller than the supplied reference slice (%2)").arg(image->getZPoints()).arg(m_ReferenceSlice);
setErrorCondition(-5556);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
QVector<size_t> cDims(1, 1);
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() < 0) { return; }
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void ReadImage::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setInputFileName( reader->readString( "InputFileName", getInputFileName() ) );
setDataContainerName( reader->readString( "DataContainerName", getDataContainerName() ) );
setCellAttributeMatrixName( reader->readString( "CellAttributeMatrixName", getCellAttributeMatrixName() ) );
setImageDataArrayName( reader->readString( "ImageDataArrayName", getImageDataArrayName() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void VtkStructuredPointsReader::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setVertexDataContainerName(reader->readString("VertexDataContainerName", getVertexDataContainerName()));
setVolumeDataContainerName(reader->readString("VolumeDataContainerName", getVolumeDataContainerName() ) );
setCellAttributeMatrixName(reader->readString("CellAttributeMatrixName", getCellAttributeMatrixName() ) );
setVertexAttributeMatrixName(reader->readString("VertexAttributeMatrixName", getVertexAttributeMatrixName() ) );
setInputFile( reader->readString( "InputFile", getInputFile() ) );
setReadPointData(reader->readValue("ReadPointData", getReadPointData()));
setReadCellData(reader->readValue("ReadCellData", getReadCellData()));
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void InitializeSyntheticVolume::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setDataContainerName(reader->readString("DataContainerName", getDataContainerName() ) );
setCellAttributeMatrixName(reader->readString("CellAttributeMatrixName", getCellAttributeMatrixName() ) );
setDimensions( reader->readIntVec3("Dimensions", getDimensions() ) );
setResolution( reader->readFloatVec3("Resolution", getResolution() ) );
setOrigin( reader->readFloatVec3("Origin", getOrigin() ) );
setInputStatsArrayPath(reader->readDataArrayPath("InputStatsArrayPath", getInputStatsArrayPath() ) );
setInputPhaseTypesArrayPath(reader->readDataArrayPath("InputPhaseTypesArrayPath", getInputPhaseTypesArrayPath() ) );
setInputStatsFile(reader->readString("InputStatsFile", getInputStatsFile() ) );
setEstimateNumberOfFeatures(reader->readValue("EstimateNumberOfFeatures", getEstimateNumberOfFeatures() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void RegularGridSampleSurfaceMesh::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
SampleSurfaceMesh::readFilterParameters(reader, index);
reader->openFilterGroup(this, index);
setXPoints(reader->readValue("XPoints", getXPoints()));
setYPoints(reader->readValue("YPoints", getYPoints()));
setZPoints(reader->readValue("ZPoints", getZPoints()));
setResolution(reader->readFloatVec3("Resolution", getResolution()));
setOrigin(reader->readFloatVec3("Origin", getOrigin()));
setDataContainerName(reader->readString("DataContainerName", getDataContainerName()));
setCellAttributeMatrixName(reader->readString("CellAttributeMatrixName", getCellAttributeMatrixName() ) );
setFeatureIdsArrayName(reader->readString("FeatureIdsArrayName", getFeatureIdsArrayName() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FeatureInfoReader::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setCellAttributeMatrixName(reader->readDataArrayPath("CellAttributeMatrixName", getCellAttributeMatrixName() ) );
setCellFeatureAttributeMatrixName(reader->readString("CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName() ) );
setFeatureEulerAnglesArrayName(reader->readString("FeatureEulerAnglesArrayName", getFeatureEulerAnglesArrayName() ) );
setFeaturePhasesArrayName(reader->readString("FeaturePhasesArrayName", getFeaturePhasesArrayName() ) );
setCellEulerAnglesArrayName(reader->readString("CellEulerAnglesArrayName", getCellEulerAnglesArrayName() ) );
setCellPhasesArrayName(reader->readString("CellPhasesArrayName", getCellPhasesArrayName() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setInputFile( reader->readString( "InputFile", getInputFile() ) );
setCreateCellLevelArrays( reader->readValue("CreateCellLevelArrays", getCreateCellLevelArrays()) );
setRenumberFeatures( reader->readValue("RenumberFeatures", getRenumberFeatures()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AdaptiveAlignmentMutualInformation::dataCheck()
{
setErrorCondition(0);
// Set the DataContainerName and AttributematrixName for the Parent Class (AdaptiveAlignment) to Use.
setDataContainerName(m_QuatsArrayPath.getDataContainerName());
setCellAttributeMatrixName(m_QuatsArrayPath.getAttributeMatrixName());
AdaptiveAlignment::dataCheck();
if (getErrorCondition() < 0) { return; }
INIT_DataArray(m_FeatureCounts, int32_t);
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 4);
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if (NULL != m_QuatsPtr.lock().get()) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_Quats = m_QuatsPtr.lock()->getPointer(0);
} /* Now assign the raw pointer to data from the DataArray<T> object */
if (getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
cDims[0] = 1;
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray< int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if (NULL != m_CellPhasesPtr.lock().get()) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0);
} /* Now assign the raw pointer to data from the DataArray<T> object */
if (getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
if (m_UseGoodVoxels == true)
{
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if (NULL != m_GoodVoxelsPtr.lock().get()) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0);
} /* Now assign the raw pointer to data from the DataArray<T> object */
if (getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
}
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<unsigned int>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if (NULL != m_CrystalStructuresPtr.lock().get()) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0);
} /* Now assign the raw pointer to data from the DataArray<T> object */
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AlignSectionsFeature::dataCheck()
{
setErrorCondition(0);
// Set the DataContainerName and AttributematrixName for the Parent Class (AlignSections) to Use.
// These are checked for validity in the Parent Class dataCheck
setDataContainerName(m_GoodVoxelsArrayPath.getDataContainerName());
setCellAttributeMatrixName(m_GoodVoxelsArrayPath.getAttributeMatrixName());
AlignSections::dataCheck();
if(getErrorCondition() < 0) { return; }
QVector<size_t> cDims(1, 1);
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void YSChoiAbaqusReader::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setDataContainerName(reader->readString("DataContainerName", getDataContainerName() ) );
setCellAttributeMatrixName(reader->readString("CellAttributeMatrixName", getCellAttributeMatrixName() ) );
setCellFeatureAttributeMatrixName(reader->readString("CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName() ) );
setCellEnsembleAttributeMatrixName(reader->readString("CellEnsembleAttributeMatrixName", getCellEnsembleAttributeMatrixName() ) );
setCrystalStructuresArrayName(reader->readString("CrystalStructuresArrayName", getCrystalStructuresArrayName() ) );
setFeatureIdsArrayName(reader->readString("FeatureIdsArrayName", getFeatureIdsArrayName() ) );
setSurfaceFeaturesArrayName(reader->readString("SurfaceFeaturesArrayName", getSurfaceFeaturesArrayName() ) );
setCellPhasesArrayName(reader->readString("CellPhasesArrayName", getCellPhasesArrayName() ) );
setAvgQuatsArrayName(reader->readString("AvgQuatsArrayName", getAvgQuatsArrayName() ) );
setQuatsArrayName(reader->readString("QuatsArrayName", getQuatsArrayName() ) );
setCellEulerAnglesArrayName(reader->readString("CellEulerAnglesArrayName", getCellEulerAnglesArrayName() ) );
setInputFile( reader->readString( "InputFile", getInputFile() ) );
setInputFeatureInfoFile( reader->readString( "InputFeatureInfoFile", getInputFeatureInfoFile() ) );
reader->closeFilterGroup();
}