C++ (Cpp) set_label_type Examples

Example #1

File: srf-absolid.c Project: Bhumi28/sra-tools

static
rc_t fe_new_read(fe_context_t *self, pstring *readId, EAbisolidReadType* type, pstring* label)
{
    rc_t rc = 0;
    pstring name_suffix;
    const char* p;

    assert(self && readId && type && label);
    DEBUG_MSG(3, ("READ_LABEL: '%s'\n", readId->data));
    /* spot name suffix may end with '_(F|R).+' */
    p = strrchr(readId->data, '_');
    if( p != NULL ) {
        rc = set_label_type(p + 1, label, type);
        if( rc == 0 && *type > eAbisolidReadType_SPOT) {
            /* cut label */
            readId->len -= label->len + 1;
        }
    } else {
        pstring_clear(label);
        *type = eAbisolidReadType_SPOT;
    }
    if( rc == 0 && (rc = pstring_copy(&name_suffix, readId)) == 0 ) {
        rc = SRAWriteAbsolid_MakeName(&self->name_prefix, &name_suffix, readId);
    }
    return rc;
}

Example #2

File: srf-absolid.c Project: Bhumi28/sra-tools

static
rc_t fe_new_region(fe_context_t *self, size_t region_count, const region_t region[])
{
    rc_t rc = 0;
    int i;

    self->region.nreads = region_count / 2;
    DEBUG_MSG(3, ("REGION: %u -> %u reads\n", region_count, self->region.nreads));
    if( self->region.nreads <= 0 || self->region.nreads > ABSOLID_FMT_MAX_NUM_READS ) {
        rc = RC(rcSRA, rcFormatter, rcParsing, rcData, rcUnsupported);
        SRALoaderFile_LOG(self->ctx.file, klogErr, rc, "read count $(c)", PLOG_U8(c), self->region.nreads);
    }
    for(i = 0; rc == 0 && i < self->region.nreads ; i++ ) {
        int j = i * 2 + 1;
        self->region.start[i] = region[j].start;
        if( (rc = set_label_type(region[j].name, &self->region.label[i], &self->region.type[i])) != 0 ) {
            break;
        }
        self->region.cs_key[i] = region[j - 1].name[0];
        DEBUG_MSG(3, ("REGION[%u]: '%s', %u, '%c', start: %u\n",
                      i, self->region.label[i].data, self->region.type[i], self->region.cs_key[i], self->region.start[i]));
        switch(region[j].type) {
            case Biological:
            case Normal:
            case Paired:
            case Technical:
                break;
            default:
                rc = RC(rcSRA, rcFormatter, rcParsing, rcData, rcUnexpected);
                SRALoaderFile_LOG(self->ctx.file, klogErr, rc, "read #$(read_id) type mismatch; expected $(expected), got $(got)",
                        "read_id=%u,expected=%s,got=%u", i, "(B|N|P|T)", region[j].type);
                return rc;
        }
    }
    if( rc == 0 &&
        self->region.nreads > 1 && self->region.type[0] == self->region.type[1] ) {
        rc = RC(rcSRA, rcFormatter, rcParsing, rcData, rcDuplicate);
        SRALoaderFile_LOG(self->ctx.file, klogErr, rc, "both reads have same type", NULL);
    }
    return rc;
}

Example #3

File: dlg-prop.c Project: cranes-bill/exred

static void
set_label (GtkWidget *label, const char *text)
{
	set_label_type (label, text, "b");
}