static struct dyString *asdMakeBaselineQuery(struct annoStreamDb *self, boolean *retHasWhere)
/* Return a baseline query, i.e. "select * from <table>". This is the default implementation
* of annoStreamDb.makeBaselineQuery. */
{
if (retHasWhere)
*retHasWhere = FALSE;
return sqlDyStringCreate("select * from %s ", self->table);
}
static struct aHubMatch *filterTrixSearchMatches(struct dbDb *dbDbList,
struct trixSearchResult *tsrList)
/* Collect the assembly hub matches (not track hub matches) from a search in hub trix files. */
{
if (tsrList == NULL)
return NULL;
struct aHubMatch *aHubMatchList = NULL;
// Make a hash of local dbs so we can tell which hub dbs must be assembly hubs
// not track hubs.
struct hash *localDbs = hashNew(0);
struct dbDb *dbDb;
for (dbDb = dbDbList; dbDb != NULL; dbDb = dbDb->next)
hashStore(localDbs, dbDb->name);
// tsrList gives hub URLs which we can then look up in hubPublic.
struct dyString *query = sqlDyStringCreate("select shortLabel,hubUrl,dbList from %s "
"where hubUrl in (",
hubPublicTableName());
struct trixSearchResult *tsr;
for (tsr = tsrList; tsr != NULL; tsr = tsr->next)
{
if (tsr != tsrList)
dyStringAppend(query, ", ");
dyStringPrintf(query, "'%s'", tsr->itemId);
}
dyStringAppendC(query, ')');
struct sqlConnection *conn = hConnectCentral();
struct sqlResult *sr = sqlGetResult(conn, query->string);
char **row;
while ((row = sqlNextRow(sr)) != NULL)
{
char *shortLabel = row[0];
char *hubUrl = row[1];
struct slName *dbName, *dbList = slNameListFromComma(row[2]);
for (dbName = dbList; dbName != NULL; dbName = dbName->next)
if (! hashLookup(localDbs, dbName->name))
{
slAddHead(&aHubMatchList, aHubMatchNew(shortLabel, hubUrl, dbName->name));
}
}
slReverse(&aHubMatchList);
hDisconnectCentral(&conn);
return aHubMatchList;
}
void expHistory(int id)
/* Show changes to an existing experiment */
{
// TODO: Libify
int i;
char **row;
struct dyString *dy = sqlDyStringCreate("select * from %sHistory", table);
if (id != 0)
dyStringPrintf(dy, " where %s=%d ", ENCODE_EXP_FIELD_IX, id);
dyStringPrintf(dy, " order by updateTime, %s", ENCODE_EXP_FIELD_IX);
struct sqlResult *sr = sqlGetResult(connExp, dyStringCannibalize(&dy));
while ((row = sqlNextRow(sr)) != NULL)
{
for (i = 0; i < ENCODEEXP_NUM_COLS+2; i++)
// history has 2 additional fields: action and user
{
printf("%s\t", row[i]);
}
puts("\n");
}
sqlFreeResult(&sr);
}
