void LLPanelGroupGeneral::draw()
{
LLPanelGroupTab::draw();
if (mPendingMemberUpdate)
{
updateMembers();
}
}
static Node *bypass()
{
Node *bypass = getNode(path);
Node *next = NULL;
Arc *arc;
PassageMarkerI nextMarker;
// Remove unwanted arcs
while (getArc(bypass) != NULL)
destroyArc(getArc(bypass), graph);
// Update extensive variables (length + descriptors + passage markers)
while (!isTerminal(path)) {
nextMarker = getNextInSequence(path);
next = getNode(nextMarker);
while (next == bypass) {
disconnectNextPassageMarker(path, graph);
destroyPassageMarker(nextMarker);
nextMarker = getNextInSequence(path);
next = getNode(nextMarker);
}
if (next == NULL)
return bypass;
// Overall node update
if (!getUniqueness(next)) {
adjustShortReads(bypass, getNextInSequence(path));
appendSequence(bypass, sequences,
getNextInSequence(path), graph);
} else {
concatenateReadStarts(bypass, next, graph);
#ifndef SINGLE_COV_CAT
Category cat;
for (cat = 0; cat < CATEGORIES; cat++) {
// Update virtual coverage
incrementVirtualCoverage(bypass, cat,
getVirtualCoverage(next, cat));
// Update original virtual coverage
incrementOriginalVirtualCoverage(bypass, cat,
getOriginalVirtualCoverage(next, cat));
}
#else
incrementVirtualCoverage(bypass, getVirtualCoverage(next));
#endif
appendDescriptors(bypass, next);
}
// Members
updateMembers(bypass, next);
// Termination
if (isTerminal(path) || getUniqueness(next))
break;
}
// Remove unique groupies from arrival
admitGroupies(next, bypass);
// Copy destination arcs
for (arc = getArc(next); arc != NULL; arc = getNextArc(arc)) {
if (getDestination(arc) == next)
continue;
else if (getDestination(arc) == getTwinNode(next))
createAnalogousArc(bypass, getTwinNode(bypass),
arc, graph);
else
createAnalogousArc(bypass, getDestination(arc),
arc, graph);
}
destroyNode(next, graph);
return bypass;
}
