C++ (Cpp) wrapMathML Examples

Example #1

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST
#endif

START_TEST (test_parse_function_vector_0args)
{
  const char* expected = wrapMathML
  (
    "  <vector/>\n"
  );

  N = SBML_parseL3Formula("vector()");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #2

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST

#if (0)
START_TEST (test_parse_function_matrix_empty)
{
  const char* expected = wrapMathML
  (
    "  <matrix/>\n"
  );

  N = SBML_parseL3Formula("matrix()");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #3

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_parse_function_vector_1args)
{
  const char* expected = wrapMathML
  (
    "  <vector>\n"
    "    <ci> x </ci>\n"
    "  </vector>\n"
  );

  N = SBML_parseL3Formula("vector(x)");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #4

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST

START_TEST (test_parse_function_determinant)
{
  const char* expected = wrapMathML
  (
    "  <apply>\n"
    "    <determinant/>\n"
    "    <ci> a </ci>\n"
    "  </apply>\n"
  );

  N = SBML_parseL3Formula("determinant(a)");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #5

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_parse_function_selector_1args)
{
  const char* expected = wrapMathML
  (
    "  <apply>\n"
    "    <selector/>\n"
    "    <ci> a </ci>\n"
    "  </apply>\n"
  );

  N = SBML_parseL3Formula("selector(a)");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #6

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_parse_function_matrix_emptyrows)
{
  ASTNode_t *r = SBML_parseL3Formula("matrix(matrixrow(), matrixrow())");
  const char* expected = wrapMathML
  (
    "  <matrix>\n"
    "    <matrixrow/>\n"
    "    <matrixrow/>\n"
    "  </matrix>\n"
  );

  N = SBML_parseL3Formula("matrix(matrixrow(), matrixrow())");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #7

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_parse_function_outer)
{
  const char* expected = wrapMathML
  (
    "  <apply>\n"
    "    <outerproduct/>\n"
    "    <ci> a </ci>\n"
    "    <ci> x </ci>\n"
    "  </apply>\n"
  );

  N = SBML_parseL3Formula("outer(a, x)");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #8

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

LIBSBML_CPP_NAMESPACE_USE
CK_CPPSTART
#endif


START_TEST (test_parse_brackets_0args)
{
  const char* expected = wrapMathML
  (
    "  <apply>\n"
    "    <selector/>\n"
    "    <ci> a </ci>\n"
    "  </apply>\n"
  );

  N = SBML_parseL3Formula("a[]");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #9

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_parse_function_matrix_1row)
{
  const char* expected = wrapMathML
  (
    "  <matrix>\n"
    "    <matrixrow>\n"
    "      <ci> x </ci>\n"
    "      <ci> y </ci>\n"
    "    </matrixrow>\n"
    "  </matrix>\n"
  );

  N = SBML_parseL3Formula("matrix(matrixrow(x, y))");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #10

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_parse_brackets_2args)
{
  const char* expected = wrapMathML
  (
    "  <apply>\n"
    "    <selector/>\n"
    "    <ci> a </ci>\n"
    "    <ci> x </ci>\n"
    "    <ci> y </ci>\n"
    "  </apply>\n"
  );

  N = SBML_parseL3Formula("a[x, y]");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #11

File: TestNewReadMathML.cpp Project: TheCoSMoCompany/biopredyn

END_TEST




START_TEST (test_element_determinant)
{
  const char* s = wrapMathML
  (
    "  <apply>"
    "    <determinant/>"
    "    <ci> A </ci>"
    "  </apply>"
  );



  N = readMathMLFromStringWithNamespaces(s, NS);

  fail_unless( N != NULL );
  fail_unless( N->getType() == AST_ORIGINATES_IN_PACKAGE);
  fail_unless( N->getExtendedType() == AST_LINEAR_ALGEBRA_DETERMINANT);
  fail_unless( N->getNumChildren() == 1);
  fail_unless( N->getPackageName() == "arrays");

  ASTNode * child = N->getChild(0);

  fail_unless( child != NULL );
  fail_unless( child->getType() == AST_NAME);
  fail_unless( child->getExtendedType() == AST_NAME);
  fail_unless( strcmp(child->getName(), "A") == 0);
  fail_unless( child->getNumChildren() == 0);
  fail_unless( child->getPackageName() == "core");

  ArraysASTPlugin* plugin = static_cast<ArraysASTPlugin*>(N->getPlugin("arrays"));
  
  fail_unless(plugin != NULL);
  fail_unless(plugin->getASTType() == AST_LINEAR_ALGEBRA_DETERMINANT);

}

Example #12

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_parse_curlybraces_semicolons_short)
{
  const char* expected = wrapMathML
  (
    "  <matrix>\n"
    "    <matrixrow>\n"
    "      <ci> x </ci>\n"
    "    </matrixrow>\n"
    "    <matrixrow>\n"
    "      <ci> p </ci>\n"
    "    </matrixrow>\n"
    "  </matrix>\n"
  );

  N = SBML_parseL3Formula("{x; p}");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #13

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_parse_curlybraces_2args)
{
  const char* expected = wrapMathML
  (
    "  <vector>\n"
    "    <ci> x </ci>\n"
    "    <apply>\n"
    "      <power/>\n"
    "      <ci> a </ci>\n"
    "      <ci> b </ci>\n"
    "    </apply>\n"
    "  </vector>\n"
  );

  N = SBML_parseL3Formula("{x, a^b}");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #14

File: TestWriteMathMLFromInfix.cpp Project: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_parse_function_selector_needNoParens2)
{
  const char* expected = wrapMathML
  (
    "  <apply>\n"
    "    <selector/>\n"
    "    <vector>\n"
    "      <cn type=\"integer\"> 1 </cn>\n"
    "      <cn type=\"integer\"> 2 </cn>\n"
    "      <cn type=\"integer\"> 3 </cn>\n"
    "      <cn type=\"integer\"> 4 </cn>\n"
    "    </vector>\n"
    "    <ci> x </ci>\n"
    "  </apply>\n"
  );

  N = SBML_parseL3Formula("selector({1, 2, 3, 4},x)");
  S = writeMathMLToString(N);

  fail_unless( equals(expected, S) );
}

Example #15

File: TestNewReadMathML.cpp Project: TheCoSMoCompany/biopredyn

CK_CPPSTART


START_TEST (test_element_vector)
{
  const char* s = wrapMathML
  (
    "<vector>"
    "  <apply>"
    "    <cos/>"
    "    <cn type=\"integer\"> 5 </cn>"
    "  </apply>"
    "  <ci> y </ci>"
    "</vector>\n"
  );



  N = readMathMLFromStringWithNamespaces(s, NS);

  fail_unless( N != NULL );
  fail_unless( N->getType() == AST_ORIGINATES_IN_PACKAGE);
  fail_unless( N->getExtendedType() == AST_LINEAR_ALGEBRA_VECTOR_CONSTRUCTOR);
  fail_unless( N->getNumChildren() == 2);
  fail_unless( N->getPackageName() == "arrays");

  ASTNode * child = N->getChild(0);

  fail_unless( child != NULL );
  fail_unless( child->getType() == AST_FUNCTION_COS);
  fail_unless( child->getExtendedType() == AST_FUNCTION_COS);
  fail_unless( child->getNumChildren() == 1);
  fail_unless( child->getPackageName() == "core");

  ASTNode *c1 = child->getChild(0);

  fail_unless( c1 != NULL );
  fail_unless( c1->getType() == AST_INTEGER);
  fail_unless( c1->getExtendedType() == AST_INTEGER);
  fail_unless( c1->getNumChildren() == 0);
  fail_unless( c1->getInteger() == 5);

  child = N->getChild(1);

  fail_unless( child != NULL );
  fail_unless( child->getType() == AST_NAME);
  fail_unless( child->getExtendedType() == AST_NAME);
  fail_unless( strcmp(child->getName(), "y") == 0);
  fail_unless( child->getNumChildren() == 0);


  ArraysASTPlugin* plugin = static_cast<ArraysASTPlugin*>(N->getPlugin("arrays"));
  
  fail_unless(plugin != NULL);
  fail_unless(plugin->getASTType() == AST_LINEAR_ALGEBRA_VECTOR_CONSTRUCTOR);


  plugin = static_cast<ArraysASTPlugin*>(child->getPlugin("arrays"));
  
  fail_unless(plugin != NULL);
  fail_unless(plugin->getASTType() == AST_ARRAYS_UNKNOWN);

}

Example #16

File: TestNewReadMathML.cpp Project: TheCoSMoCompany/biopredyn

END_TEST




START_TEST (test_element_matrix)
{
  const char* s = wrapMathML
  (
    "<matrix>"
    "<matrixrow>"
    "<apply>"
    "<cos/>"
    "<cn type=\"integer\"> 5 </cn>"
    "</apply>"
    "<ci> y </ci>"
    "</matrixrow>"
    "<matrixrow>"
    "<cn type=\"integer\"> 2 </cn>"
    "<apply>"
    "<cos/>"
    "<cn type=\"integer\"> 5 </cn>"
    "</apply>"
    "</matrixrow>"
    "</matrix>\n"
  );



  N = readMathMLFromStringWithNamespaces(s, NS);

  fail_unless( N != NULL );
  fail_unless( N->getType() == AST_ORIGINATES_IN_PACKAGE);
  fail_unless( N->getExtendedType() == AST_LINEAR_ALGEBRA_MATRIX_CONSTRUCTOR);
  fail_unless( N->getNumChildren() == 2);
  fail_unless( N->getPackageName() == "arrays");

  ASTNode * child = N->getChild(0);

  fail_unless( child != NULL );
  fail_unless( child->getType() == AST_ORIGINATES_IN_PACKAGE);
  fail_unless( child->getExtendedType() == AST_LINEAR_ALGEBRA_MATRIXROW_CONSTRUCTOR);
  fail_unless( child->getNumChildren() == 2);
  fail_unless( child->getPackageName() == "arrays");

  ASTNode *c1 = child->getChild(0);

  fail_unless( c1 != NULL );
  fail_unless( c1->getType() == AST_FUNCTION_COS);
  fail_unless( c1->getExtendedType() == AST_FUNCTION_COS);
  fail_unless( c1->getNumChildren() == 1);
  fail_unless( c1->getPackageName() == "core");

  child = N->getChild(1);

  fail_unless( child != NULL );
  fail_unless( child->getType() == AST_ORIGINATES_IN_PACKAGE);
  fail_unless( child->getExtendedType() == AST_LINEAR_ALGEBRA_MATRIXROW_CONSTRUCTOR);
  fail_unless( child->getNumChildren() == 2);
  fail_unless( child->getPackageName() == "arrays");

  c1 = child->getChild(0);

  fail_unless( c1 != NULL );
  fail_unless( c1->getType() == AST_INTEGER);
  fail_unless( c1->getExtendedType() == AST_INTEGER);
  fail_unless( c1->getNumChildren() == 0);
  fail_unless( c1->getInteger() == 2);
  
  ArraysASTPlugin* plugin = static_cast<ArraysASTPlugin*>(N->getPlugin("arrays"));
  
  fail_unless(plugin != NULL);
  fail_unless(plugin->getASTType() == AST_LINEAR_ALGEBRA_MATRIX_CONSTRUCTOR);

}