/**
* @brief Return the array name
* @return AffxString - The array name
*/
AffxString CNReporter::getArrayName()
{
AffxString strArrayName;
if (m_pEngine->getOpt("array-name") == "") {
if ((m_pEngine->isOptDefined("cdf-file")) && (m_pEngine->getOpt("cdf-file") != "")) {
strArrayName = Fs::basename(m_pEngine->getOpt("cdf-file"));
int iFindIndex = strArrayName.indexOf(".");
if (iFindIndex != -1) {
strArrayName = strArrayName.substring(0, iFindIndex);
}
} else if ((m_pEngine->isOptDefined("spf-file")) && (m_pEngine->getOpt("spf-file") != "")) {
strArrayName = Fs::basename(m_pEngine->getOpt("spf-file"));
int iFindIndex = strArrayName.indexOf(".");
if (iFindIndex != -1) {
strArrayName = strArrayName.substring(0, iFindIndex);
}
} else {
if (m_pEngine->isOptDefined("annotation-file")) {
strArrayName = Fs::basename(m_pEngine->getOpt("annotation-file"));
int iFindIndex = strArrayName.indexOf(".");
if (iFindIndex != -1) {
strArrayName = strArrayName.substring(0, iFindIndex);
}
}
}
} else {
strArrayName = m_pEngine->getOpt("array-name");
}
return strArrayName;
}
void CNReporter::loadParam(const AffxString& strName, PgOpt::PgOptType type, const AffxString& strValue, affymetrix_calvin_parameter::ParameterNameValueType& param)
{
param.SetName(StringUtils::ConvertMBSToWCS(strName));
switch (type) {
case PgOpt::BOOL_OPT: param.SetValueInt8(((strValue == "true") ? (char)1 : (char)0)); break;
case PgOpt::DOUBLE_OPT: param.SetValueFloat((float)::getDouble(strValue)); break;
case PgOpt::INT_OPT: param.SetValueInt32(::getInt(strValue)); break;
case PgOpt::STRING_OPT:
if ((strName.indexOf("command-line") != -1) || (strName.indexOf("analysis") != -1) || (strName.indexOf("program-cvs-id") != -1) || (strName.indexOf("version-to-report") != -1) || (strName.endsWith("-dir"))) {
param.SetValueText(StringUtils::ConvertMBSToWCS(strValue));
} else {
param.SetValueText(StringUtils::ConvertMBSToWCS(Fs::basename(strValue)));
}
break;
default: throw(Except("Cannot find PgOpt type for: " + strName));
}
}
