C++ (Cpp) ArrayData::DataTypeIdentifier Examples

Example #1

void ArrayDataTest::testproperty_Properties()
{
	string id = "file_id";
	ArrayData array;
	array.ArraySetFileIdentifier() = id;
	CPPUNIT_ASSERT(array.ArraySetFileIdentifier() == id);

	array.DataTypeIdentifier() = "affymetrix-calvin-arraysetfile";
	CPPUNIT_ASSERT(array.DataTypeIdentifier() == "affymetrix-calvin-arraysetfile");
	array.CreatedStep() = ArrayRegistrationStep;
	CPPUNIT_ASSERT(array.CreatedStep() == ArrayRegistrationStep);
	array.InitialProject() = L"none";
	CPPUNIT_ASSERT(array.InitialProject() == L"none");
	array.CreationDateTime() = L"now";
	CPPUNIT_ASSERT(array.CreationDateTime() == L"now");
	array.CreatedBy() = L"me";
	CPPUNIT_ASSERT(array.CreatedBy() == L"me");
}

Example #2

File: FusionArrayFileTest.cpp Project: einon/affymetrix-power-tools

/*! Test the handling of attempting to read an array file that does not exist. */
void FusionArrayFileReaderTest::testmethod_Read_missing_file()
{
	FusionArrayFileReader reader;
	ArrayData data;
	CPPUNIT_ASSERT( reader.Read("no_file", data) == false);
	CPPUNIT_ASSERT( data.ArraySetFileIdentifier() == "");
	CPPUNIT_ASSERT( data.DataTypeIdentifier() == "");
	CPPUNIT_ASSERT( data.PhysicalArraysAttributes().size() == 0);
	CPPUNIT_ASSERT( data.UserAttributes().size() == 0);
}

Example #3

void ArrayDataTest::testmethod_Clear()
{
	string id = "file_id";
	ArrayData array;
	array.ArraySetFileIdentifier() = id;
	array.PhysicalArraysAttributes().resize(2);
	array.UserAttributes().resize(4);
	array.DataTypeIdentifier() = "affymetrix-calvin-arraysetfile";
	array.CreatedStep() = ArrayRegistrationStep;
	array.InitialProject() = L"none";
	array.CreationDateTime() = L"now";
	array.CreatedBy() = L"me";
	array.Clear();

	CPPUNIT_ASSERT(array.ArraySetFileIdentifier() == "");
	CPPUNIT_ASSERT(array.PhysicalArraysAttributes().size() == 0);
	CPPUNIT_ASSERT(array.UserAttributes().size() == 0);
	CPPUNIT_ASSERT(array.DataTypeIdentifier() == "");
	CPPUNIT_ASSERT(array.CreatedStep() == NoStep);
	CPPUNIT_ASSERT(array.InitialProject() == L"");
	CPPUNIT_ASSERT(array.CreationDateTime() == L"");
	CPPUNIT_ASSERT(array.CreatedBy() == L"");
}

Example #4

File: FusionArrayFileTest.cpp Project: einon/affymetrix-power-tools

/*! Test the ability to read a valid Calvin array file. */
void FusionArrayFileReaderTest::testmethod_Read_calvin_array_file()
{
	FusionArrayFileReader reader;
	ArrayData array;
	CPPUNIT_ASSERT( reader.Read(CALVIN_FILE, array) == true);

	CPPUNIT_ASSERT( array.DataTypeIdentifier() == ARRAY_SET_FILE_TYPE_IDENTIFIER );
	CPPUNIT_ASSERT(	array.ArraySetFileIdentifier() == std::string("432-432-432-432"));
	CPPUNIT_ASSERT( array.CreatedStep() == ArrayRegistrationStep);
	CPPUNIT_ASSERT( array.InitialProject() == L"my_project");
	CPPUNIT_ASSERT( array.CreationDateTime() == L"8/12/2005 9:00AM");
	CPPUNIT_ASSERT( array.CreatedBy() == L"ljevon");

	CPPUNIT_ASSERT( array.PhysicalArraysAttributes().size() == 1);

	ArrayAttributes &atts = array.PhysicalArraysAttributes()[0];

	CPPUNIT_ASSERT( atts.Identifier() == "123-123-123-123");
	CPPUNIT_ASSERT( atts.ArrayName() == "mychip");
	CPPUNIT_ASSERT( atts.ArrayBarcode() == "@1234567890");
	CPPUNIT_ASSERT( atts.Media() == PlateOrStripMedia);
	CPPUNIT_ASSERT( atts.MediaRow() == 1);
	CPPUNIT_ASSERT( atts.MediaCol() == 12);
	CPPUNIT_ASSERT( atts.MasterFile() == "Test3.master");
	CPPUNIT_ASSERT( atts.MasterFileId() == "123-123-123-123");
	CPPUNIT_ASSERT( atts.PatAssignment() == AffyBarcodeAssignment);
	CPPUNIT_ASSERT( atts.CreationDateTime() == L"8/12/2005 10:00AM");
	CPPUNIT_ASSERT( atts.CreatedBy() == L"ljevon");
	CPPUNIT_ASSERT( atts.CreatedStep() == ScanningStep);
	CPPUNIT_ASSERT( atts.Comment() == L"here is a comment");

	ParameterNameValuePairVector &params = atts.Attributes();
	ParameterNameValuePairVector::iterator paramIt = params.begin();
	CPPUNIT_ASSERT( params.size() == 2);
	CPPUNIT_ASSERT( (*paramIt).Name == L"SampleID");
	CPPUNIT_ASSERT( (*paramIt).Value == L"433232");
	++paramIt;
	CPPUNIT_ASSERT( (*paramIt).Name == L"LIMS System");
	CPPUNIT_ASSERT( (*paramIt).Value == L"Nautilis");


	ParameterNameValueDefaultRequiredTypeList &userParams = array.UserAttributes();
	CPPUNIT_ASSERT( userParams.size() == 6 );

	ParameterNameValueDefaultRequiredTypeList::iterator userIt = userParams.begin();
	CPPUNIT_ASSERT( (*userIt).GetName() == L"Species" );
	CPPUNIT_ASSERT( (*userIt).GetValueText() == L"H**o Sapien" );
	CPPUNIT_ASSERT( (*userIt).RequiredFlag() == true );
	CPPUNIT_ASSERT( (*userIt).ControlledVocabulary().size() == 0 );
	CPPUNIT_ASSERT( (*userIt).ValueType() == ParameterNameValueDefaultRequiredType::TextParameterType);
	++userIt;
	CPPUNIT_ASSERT( (*userIt).GetName() == L"Individual" );
	CPPUNIT_ASSERT( (*userIt).GetValueText() == L"me" );
	CPPUNIT_ASSERT( (*userIt).RequiredFlag() == false );
	CPPUNIT_ASSERT( (*userIt).ControlledVocabulary().size() == 0 );
	CPPUNIT_ASSERT( (*userIt).ValueType() == ParameterNameValueDefaultRequiredType::TextParameterType);
	++userIt;
	CPPUNIT_ASSERT( (*userIt).GetName() == L"When" );
	CPPUNIT_ASSERT( (*userIt).GetValueText() == L"now" );
	CPPUNIT_ASSERT( (*userIt).RequiredFlag() == false );
	CPPUNIT_ASSERT( (*userIt).ControlledVocabulary().size() == 0 );
	CPPUNIT_ASSERT( (*userIt).ValueType() == ParameterNameValueDefaultRequiredType::TimeParameterType);
	++userIt;
	CPPUNIT_ASSERT( (*userIt).GetName() == L"How much" );
	const double eps = 1e-5;
	CPPUNIT_ASSERT_DOUBLES_EQUAL( (*userIt).GetValueFloat(), 1.0, eps);
	CPPUNIT_ASSERT( (*userIt).RequiredFlag() == false );
	CPPUNIT_ASSERT( (*userIt).ControlledVocabulary().size() == 0 );
	CPPUNIT_ASSERT( (*userIt).ValueType() == ParameterNameValueDefaultRequiredType::FloatParameterType);
	++userIt;
	CPPUNIT_ASSERT( (*userIt).GetName() == L"Sex" );
	CPPUNIT_ASSERT( (*userIt).GetValueText() == L"" );
	CPPUNIT_ASSERT( (*userIt).RequiredFlag() == false );
	CPPUNIT_ASSERT( (*userIt).ValueType() == ParameterNameValueDefaultRequiredType::ControlMultiParameterType);

	std::list<std::wstring>::iterator cit = (*userIt).ControlMultiValues().begin();
	CPPUNIT_ASSERT( (*cit) == L"Male" );
	++cit;
	CPPUNIT_ASSERT( (*cit) == L"Other" );

	CPPUNIT_ASSERT( (*userIt).ControlledVocabulary().size() == 4 );
	cit = (*userIt).ControlledVocabulary().begin();
	CPPUNIT_ASSERT( (*cit) == L"Male" );
	++cit;
	CPPUNIT_ASSERT( (*cit) == L"Female" );
	++cit;
	CPPUNIT_ASSERT( (*cit) == L"Unknown" );
	++cit;
	CPPUNIT_ASSERT( (*cit) == L"Other" );
	++userIt;
	CPPUNIT_ASSERT( (*userIt).GetName() == L"Age" );
	CPPUNIT_ASSERT( (*userIt).GetValueText() == L"30 something" );
	CPPUNIT_ASSERT( (*userIt).RequiredFlag() == false );
	CPPUNIT_ASSERT( (*userIt).ValueType() == ParameterNameValueDefaultRequiredType::TextParameterType);
	CPPUNIT_ASSERT( (*userIt).ControlledVocabulary().size() == 0 );
	++userIt;
	CPPUNIT_ASSERT (userIt == userParams.end() );


}