C++ (Cpp) Chronometer::print_time Examples

Example #1

File: kClust.cpp Project: soedinglab/kClust

int main(int argc, const char **argv){

	if( argc<5 ){
		usage(cerr);
		return 1;
	}

	try{
		Params params;
		set_params( argc, argv, params );
		params.check();

		K_Clust c( &params );

		if (params.profile_query){
			std::cerr << "Preprocessing...\n";
			c.prepare();
			std::cerr << "done.\n";
		}

		Chronometer chron;
		chron.start();

		c.cluster();

		//	c.kDP_benchmark_scop_tpfp();


		float cl_seconds = chron.getSnapShotSeconds();
		cerr << "Runtime for representatives: " << cl_seconds << " seconds" << endl;

		c.write_representatives_db();
		float wrep_seconds = chron.getSnapShotSeconds();
		cerr << "Runtime for write representatives: " << wrep_seconds - cl_seconds << " seconds" << endl;
		c.write_dmp_files();
		float wdmp_seconds = chron.getSnapShotSeconds();
		cerr << "Runtime for write dmp files: " << wdmp_seconds - wrep_seconds << " seconds" << endl;
//		c.write_debug_files((params.get_working_dir() +"debug.dat").c_str());
//		float wdebug_seconds = chron.getSnapShotSeconds();
//		cerr << "Runtime for write debug files: " << wdebug_seconds - wdmp_seconds << " seconds" << endl;

		if( params.refinement ){
			cerr << "Perform refinement" << endl;
			c.refine();
			cerr << "Runtime for refinement: " << chron.getSnapShotSeconds()-wdmp_seconds << " seconds" << endl;
		}
		//cerr << "After refinement - before free tables" << endl;
		c.free_tables_seedlists_kmeraln();

		if( params.refinement ){
			//cerr << "Write refined nodes" << endl;
			c.write_refined_nodes_dmp();
		}

		//cerr << "write debug files" << endl;
//		c.write_debug_files( (params.get_working_dir() +"debug_refined.dat").c_str() );

		//cerr << "cleanup tmp-files" << endl;
		c.cleanup_tmp_files();

		//cerr << "Print time" << endl;
		chron.stop();

		chron.print_time( std::cerr );

	}catch(const std::exception &e){
		std::cerr << std::endl << ">" << std::endl;
		std::cerr << "ERROR: " << e.what() << std::endl;
		std::cerr << ">" << std::endl;
		return 3;
	}
	return 0;
}