void ConvertDataset(string &filepath,string &dspath,string &outname)
{
//获取数据集数据
DataSet ds;
ds.InitFromFile(filepath.c_str(),dspath);
//暂时认为全部是ushort型
if(ds.GetData()!=NULL)
ExportFile(&ds,outname);
}
void GetRow(int row, RowDataType &d)
{
GenericData data;
GenericFileReader reader;
reader.SetFilename(TEST_FILE);
reader.Open(data);
DataSet *set = data.DataSet(0, 0);
set->Open();
set->GetData(row, 0, d.str);
set->GetData(row, 1, d.wstr);
set->GetData(row, 2, d.b);
set->GetData(row, 3, d.s);
set->GetData(row, 4, d.i);
set->GetData(row, 5, d.ub);
set->GetData(row, 6, d.us);
set->GetData(row, 7, d.ui);
set->GetData(row, 8, d.f);
set->Close();
set->Delete();
}
/*
* Read the file contents into the data object.
*/
void GridControlFileReader::Read(const std::string &fileName, GridControlData& data)
{
// Clear the old data and read the file.
data.Clear();
GenericFileReader reader;
GenericData gdata;
reader.SetFilename(fileName);
reader.ReadHeader(gdata);
// Check the file identifier
if (gdata.FileIdentifier() != GRD_FILE_TYPE_IDENTIFIER)
{
affymetrix_calvin_exceptions::InvalidFileTypeException e(L"Calvin",L"Default Description, Please Update!",affymetrix_calvin_utilities::DateTime::GetCurrentDateTime().ToString(),std::string(__FILE__),(u_int16_t)__LINE__,0);
throw e;
}
// Get the header parameters.
ParameterNameValueType param;
gdata.Header().GetGenericDataHdr()->FindNameValParam(GRD_ROWS_PARAMETER_NAME, param);
data.SetRows(param.GetValueInt32());
gdata.Header().GetGenericDataHdr()->FindNameValParam(GRD_COLUMNS_PARAMETER_NAME, param);
data.SetColumns(param.GetValueInt32());
// Get the XY coordinates from the dataSets.
FeatureCoordinate coord;
u_int16_t x;
u_int16_t y;
int nRows;
DataSet *dataSet;
// First the B1 probes.
dataSet = gdata.DataSet(GRD_FILE_COORDINATE_GROUP_NAME, GRD_FILE_B1_SET_NAME);
if (dataSet->Open() == false)
{
affymetrix_calvin_exceptions::DataSetNotOpenException e(L"Calvin",L"Default Description, Please Update!",affymetrix_calvin_utilities::DateTime::GetCurrentDateTime().ToString(),std::string(__FILE__),(u_int16_t)__LINE__,0);
throw e;
}
nRows = dataSet->Rows();
data.ResizeB1(nRows);
for (int iRow=0; iRow<nRows; iRow++)
{
dataSet->GetData(iRow, 0, x);
dataSet->GetData(iRow, 1, y);
coord.x = x;
coord.y = y;
data.SetB1(iRow, coord);
}
dataSet->Close();
dataSet->Delete();
// Next the B2 probes.
dataSet = gdata.DataSet(GRD_FILE_COORDINATE_GROUP_NAME, GRD_FILE_B2_SET_NAME);
if (dataSet->Open() == false)
{
affymetrix_calvin_exceptions::DataSetNotOpenException e(L"Calvin",L"Default Description, Please Update!",affymetrix_calvin_utilities::DateTime::GetCurrentDateTime().ToString(),std::string(__FILE__),(u_int16_t)__LINE__,0);
throw e;
}
nRows = dataSet->Rows();
data.ResizeB2(nRows);
for (int iRow=0; iRow<nRows; iRow++)
{
dataSet->GetData(iRow, 0, x);
dataSet->GetData(iRow, 1, y);
coord.x = x;
coord.y = y;
data.SetB2(iRow, coord);
}
dataSet->Close();
dataSet->Delete();
// Last the NS probes.
dataSet = gdata.DataSet(GRD_FILE_COORDINATE_GROUP_NAME, GRD_FILE_NS_SET_NAME);
if (dataSet->Open() == false)
{
affymetrix_calvin_exceptions::DataSetNotOpenException e(L"Calvin",L"Default Description, Please Update!",affymetrix_calvin_utilities::DateTime::GetCurrentDateTime().ToString(),std::string(__FILE__),(u_int16_t)__LINE__,0);
throw e;
}
nRows = dataSet->Rows();
data.ResizeNS(nRows);
for (int iRow=0; iRow<nRows; iRow++)
{
dataSet->GetData(iRow, 0, x);
dataSet->GetData(iRow, 1, y);
coord.x = x;
coord.y = y;
data.SetNS(iRow, coord);
}
dataSet->Close();
dataSet->Delete();
}
