C++ (Cpp) Genome::setSubString Examples

Example #1

File: halTopSegmentTest.cpp Project: glennhickey/hal

void TopSegmentSequenceTest::createCallBack(Alignment *alignment) {
    Genome *ancGenome = alignment->addRootGenome("Anc0", 0);
    vector<Sequence::Info> seqVec(1);
    seqVec[0] = Sequence::Info("Sequence", 1000000, 5000, 700000);
    ancGenome->setDimensions(seqVec);

    ancGenome->setSubString("CACACATTC", 500, 9);
    TopSegmentIteratorPtr tsIt = ancGenome->getTopSegmentIterator(100);
    tsIt->getTopSegment()->setCoordinates(500, 9);
}