ModelObjectsTemp GaussianProcessInterpolation::get_inputs()
    const {
  ModelObjectsTemp ret;
  ModelObjectsTemp ret1 = mean_function_->get_inputs();
  ret.insert(ret.end(), ret1.begin(), ret1.end());
  ret.push_back(sigma_);
  ModelObjectsTemp ret2 = covariance_function_->get_inputs();
  ret.insert(ret.end(), ret2.begin(), ret2.end());
  return ret;
}
Example #2
0
ModelObjectsTemp HelixRestraint::do_get_inputs() const {
  ModelObjectsTemp ps;
  Model *m = get_model();
  for (IMP::Vector<IMP::PointerMember<
         core::MultipleBinormalRestraint> >::const_iterator td = dihedral_rs_.begin();
       td != dihedral_rs_.end(); ++td){
    ModelObjectsTemp bps = (*td)->get_inputs();
    ps.insert(ps.end(), bps.begin(), bps.end());
  }
  for (ParticleIndexPairs::const_iterator tb = bonds_ON_.begin();
       tb != bonds_ON_.end(); ++tb) {
    ps.push_back(m->get_particle((*tb)[0]));
    ps.push_back(m->get_particle((*tb)[1]));
  }

  return ps;
}
Example #3
0
void ModelObject::validate_outputs() const {
  if (!get_has_dependencies()) return;
  IMP_IF_CHECK(USAGE_AND_INTERNAL) {
    IMP_CHECK_OBJECT(this);
    ModelObjectsTemp ret = do_get_outputs();
    std::sort(ret.begin(), ret.end());
    ret.erase(std::unique(ret.begin(), ret.end()), ret.end());
    ModelObjectsTemp saved = get_model()->get_dependency_graph_outputs(this);
    std::sort(saved.begin(), saved.end());
    ModelObjectsTemp intersection;
    std::set_intersection(saved.begin(), saved.end(), ret.begin(), ret.end(),
                          std::back_inserter(intersection));
    IMP_USAGE_CHECK(
        intersection.size() == ret.size(),
        "Dependencies changed without invalidating dependencies."
            << " Make sure you call set_has_dependencies(false) any "
            << "time the list of dependencies changed. Object is " << get_name()
            << " of type " << get_type_name());
  }
}