Time::Time(const std::string& dicomTime) : _hour(0), _min(0), _second(0.0)
{
OFTime ofTime = AIMUtil::TimeConvert(dicomTime);
if (ofTime.isValid())
{
_hour = ofTime.getHour();
_min = ofTime.getMinute();
_second = ofTime.getSecond();
}
}
bool StoreHandler::AddDICOMFileInfoToDatabase(boost::filesystem::path filename)
{
// now try to add the file into the database
if(!boost::filesystem::exists(filename))
return false;
DcmFileFormat dfile;
if(dfile.loadFile(filename.c_str()).bad())
return false;
OFDate datebuf;
OFTime timebuf;
OFString textbuf;
long numberbuf;
std::string sopuid, seriesuid, studyuid;
dfile.getDataset()->findAndGetOFString(DCM_SOPInstanceUID, textbuf);
sopuid = textbuf.c_str();
dfile.getDataset()->findAndGetOFString(DCM_SeriesInstanceUID, textbuf);
seriesuid = textbuf.c_str();
dfile.getDataset()->findAndGetOFString(DCM_StudyInstanceUID, textbuf);
studyuid = textbuf.c_str();
bool isOk = true;
try
{
Poco::Data::Session dbconnection(config::getConnectionString());
std::vector<PatientStudy> patientstudies;
Poco::Data::Statement patientstudiesselect(dbconnection);
patientstudiesselect << "SELECT id,"
"StudyInstanceUID,"
"StudyID,"
"AccessionNumber,"
"PatientName,"
"PatientID,"
"StudyDate,"
"ModalitiesInStudy,"
"StudyDescription,"
"PatientSex,"
"PatientBirthDate,"
"ReferringPhysicianName,"
"created_at,updated_at"
" FROM patient_studies WHERE StudyInstanceUID = ?",
into(patientstudies),
use(studyuid);
patientstudiesselect.execute();
if(patientstudies.size() == 0)
{
// insert
patientstudies.push_back(PatientStudy());
}
PatientStudy &patientstudy = patientstudies[0];
patientstudy.StudyInstanceUID = studyuid;
dfile.getDataset()->findAndGetOFString(DCM_PatientName, textbuf);
patientstudy.PatientName = textbuf.c_str();
dfile.getDataset()->findAndGetOFString(DCM_StudyID, textbuf);
patientstudy.StudyID = textbuf.c_str();
dfile.getDataset()->findAndGetOFString(DCM_AccessionNumber, textbuf);
patientstudy.AccessionNumber = textbuf.c_str();
dfile.getDataset()->findAndGetOFString(DCM_PatientID, textbuf);
patientstudy.PatientID = textbuf.c_str();
datebuf = getDate(dfile.getDataset(), DCM_StudyDate);
timebuf = getTime(dfile.getDataset(), DCM_StudyTime);
// use DCM_TimezoneOffsetFromUTC ?
if(datebuf.isValid() && timebuf.isValid())
{
patientstudy.StudyDate.assign(datebuf.getYear(), datebuf.getMonth(), datebuf.getDay(), timebuf.getHour(), timebuf.getMinute(), timebuf.getSecond());
}
// handle modality list...
std::string modalitiesinstudy = patientstudy.ModalitiesInStudy;
std::set<std::string> modalityarray;
if(modalitiesinstudy.length() > 0)
boost::split(modalityarray, modalitiesinstudy, boost::is_any_of("\\"));
dfile.getDataset()->findAndGetOFStringArray(DCM_Modality, textbuf);
modalityarray.insert(textbuf.c_str());
patientstudy.ModalitiesInStudy = boost::join(modalityarray, "\\");
dfile.getDataset()->findAndGetOFString(DCM_StudyDescription, textbuf);
patientstudy.StudyDescription = textbuf.c_str();
dfile.getDataset()->findAndGetOFString(DCM_PatientSex, textbuf);
patientstudy.PatientSex = textbuf.c_str();
datebuf = getDate(dfile.getDataset(), DCM_PatientBirthDate);
if(datebuf.isValid())
patientstudy.PatientBirthDate.assign(datebuf.getYear(), datebuf.getMonth(), datebuf.getDay());
dfile.getDataset()->findAndGetOFString(DCM_ReferringPhysicianName, textbuf);
patientstudy.ReferringPhysicianName = textbuf.c_str();
patientstudy.updated_at = Poco::DateTime();
if(patientstudy.id != 0)
{
Poco::Data::Statement update(dbconnection);
update << "UPDATE patient_studies SET "
"id = ?,"
"StudyInstanceUID = ?,"
"StudyID = ?,"
"AccessionNumber = ?,"
"PatientName = ?,"
"PatientID = ?,"
"StudyDate = ?,"
"ModalitiesInStudy = ?,"
"StudyDescription = ?,"
"PatientSex = ?,"
"PatientBirthDate = ?,"
"ReferringPhysicianName = ?,"
"created_at = ?, updated_at = ?"
" WHERE id = ?",
use(patientstudy),
use(patientstudy.id);
update.execute();
}
else
{
patientstudy.created_at = Poco::DateTime();
Poco::Data::Statement insert(dbconnection);
insert << "INSERT INTO patient_studies VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)",
use(patientstudy);
insert.execute();
dbconnection << "SELECT LAST_INSERT_ID()", into(patientstudy.id), now;
}
// update the series table
std::vector<Series> series_list;
Poco::Data::Statement seriesselect(dbconnection);
seriesselect << "SELECT id,"
"SeriesInstanceUID,"
"Modality,"
"SeriesDescription,"
"SeriesNumber,"
"SeriesDate,"
"created_at,updated_at,"
"patient_study_id"
" FROM series WHERE SeriesInstanceUID = ?",
into(series_list),
use(seriesuid);
seriesselect.execute();
if(series_list.size() == 0)
{
series_list.push_back(Series(patientstudy.id));
}
Series &series = series_list[0];
series.SeriesInstanceUID = seriesuid;
dfile.getDataset()->findAndGetOFString(DCM_Modality, textbuf);
series.Modality = textbuf.c_str();
dfile.getDataset()->findAndGetOFString(DCM_SeriesDescription, textbuf);
series.SeriesDescription = textbuf.c_str();
dfile.getDataset()->findAndGetSint32(DCM_SeriesNumber, numberbuf);
series.SeriesNumber = numberbuf;
datebuf = getDate(dfile.getDataset(), DCM_SeriesDate);
timebuf = getTime(dfile.getDataset(), DCM_SeriesTime);
// use DCM_TimezoneOffsetFromUTC ?
if(datebuf.isValid() && timebuf.isValid())
{
series.SeriesDate.assign(datebuf.getYear(), datebuf.getMonth(), datebuf.getDay(), timebuf.getHour(), timebuf.getMinute(), timebuf.getSecond());
}
series.updated_at = Poco::DateTime();
if(series.id != 0)
{
Poco::Data::Statement update(dbconnection);
update << "UPDATE series SET "
"id = ?,"
"SeriesInstanceUID = ?,"
"Modality = ?,"
"SeriesDescription = ?,"
"SeriesNumber = ?,"
"SeriesDate = ?,"
"created_at = ?, updated_at = ?,"
"patient_study_id = ?"
" WHERE id = ?",
use(series),
use(series.id);
update.execute();
}
else
{
series.created_at = Poco::DateTime();
Poco::Data::Statement insert(dbconnection);
insert << "INSERT INTO series VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?)",
use(series);
insert.execute();
dbconnection << "SELECT LAST_INSERT_ID()", into(series.id), now;
}
// update the images table
std::vector<Instance> instances;
Poco::Data::Statement instanceselect(dbconnection);
instanceselect << "SELECT id,"
"SOPInstanceUID,"
"InstanceNumber,"
"created_at,updated_at,"
"series_id"
" FROM instances WHERE SOPInstanceUID = ?",
into(instances),
use(sopuid);
instanceselect.execute();
if(instances.size() == 0)
{
instances.push_back(Instance(series.id));
}
Instance &instance = instances[0];
instance.SOPInstanceUID = sopuid;
dfile.getDataset()->findAndGetSint32(DCM_InstanceNumber, numberbuf);
instance.InstanceNumber = numberbuf;
instance.updated_at = Poco::DateTime();
if(instance.id != 0)
{
Poco::Data::Statement update(dbconnection);
update << "UPDATE instances SET "
"id = ?,"
"SOPInstanceUID = ?,"
"InstanceNumber = ?,"
"created_at = ?, updated_at = ?,"
"series_id = ?"
" WHERE id = ?",
use(instance),
use(instance.id);
update.execute();
}
else
{
instance.created_at = Poco::DateTime();
Poco::Data::Statement insert(dbconnection);
insert << "INSERT INTO instances VALUES(?, ?, ?, ?, ?, ?)",
use(instance);
insert.execute();
dbconnection << "SELECT LAST_INSERT_ID()", into(series.id), now;
}
}
catch(Poco::Data::DataException &e)
{
std::string what = e.message();
isOk = false;
DCMNET_ERROR(what);
}
return isOk;
}