void DustSystem::writedensity() const
{
// construct a private class instance to do the work (parallelized)
WriteDensity wd(this);
Parallel* parallel = find<ParallelFactory>()->parallel();
// get the dimension of the dust system
int dimDust = dimension();
// For the xy plane (always)
{
wd.setup(1,1,0);
parallel->call(&wd, Np);
wd.write();
}
// For the xz plane (only if dimension is at least 2)
if (dimDust >= 2)
{
wd.setup(1,0,1);
parallel->call(&wd, Np);
wd.write();
}
// For the yz plane (only if dimension is 3)
if (dimDust == 3)
{
wd.setup(0,1,1);
parallel->call(&wd, Np);
wd.write();
}
}
bool Parallel::initWithActions(ActionInterval * action, ...)
{
va_list actions;
va_start(actions, action);
ActionInterval * action1 = action;
while (action1 != NULL)
{
ActionInterval * action2 = va_arg(actions, ActionInterval *);
if (action2 != NULL)
{
Parallel * tmp = new Parallel();
tmp->autorelease();
tmp->_initWithTwoActions(action1, action2);
action1 = tmp;
}
else
{
ActionInterval * tmp = new ActionInterval();
tmp->autorelease();
_initWithTwoActions(action1, tmp);
break;
}
}
va_end(actions);
return false;
}
// Parses a network that begins with 'R'.
Network* NetworkBuilder::ParseR(const StaticShape& input_shape, char** str) {
char dir = (*str)[1];
if (dir == 'x' || dir == 'y') {
STRING name = "Reverse";
name += dir;
*str += 2;
Network* network = BuildFromString(input_shape, str);
if (network == nullptr) return nullptr;
Reversed* rev =
new Reversed(name, dir == 'y' ? NT_YREVERSED : NT_XREVERSED);
rev->SetNetwork(network);
return rev;
}
int replicas = strtol(*str + 1, str, 10);
if (replicas <= 0) {
tprintf("Invalid R spec!:%s\n", *str);
return nullptr;
}
Parallel* parallel = new Parallel("Replicated", NT_REPLICATED);
char* str_copy = *str;
for (int i = 0; i < replicas; ++i) {
str_copy = *str;
Network* network = BuildFromString(input_shape, &str_copy);
if (network == NULL) {
tprintf("Invalid replicated network!\n");
delete parallel;
return nullptr;
}
parallel->AddToStack(network);
}
*str = str_copy;
return parallel;
}
void test_parallel()
{
printf("[test parallel]\n");
Parallel p;
int cpus = p.get_num_cpus();
printf("CPUS: %d\n", cpus);
}
void DustSystem::writedepthmap() const
{
// construct a private class instance to do the work (parallelized)
WriteDepthMap wdm(this);
Parallel* parallel = find<ParallelFactory>()->parallel();
parallel->call(&wdm, Npy);
wdm.write();
}
EBTStatus PlannerTaskParallel::update(Agent* pAgent, EBTStatus childStatus)
{
BEHAVIAC_UNUSED_VAR(childStatus);
BEHAVIAC_ASSERT(Parallel::DynamicCast(this->m_node) != 0);
Parallel* node = (Parallel*)this->m_node;
EBTStatus s = node->ParallelUpdate(pAgent, this->m_children);
return s;
}
TEST(Parallel_Test, Batch_Test) {
reset_counters();
std::atomic<unsigned> atom = 0;
Future future;
for (unsigned x = 0; x < BATCH_TEST_COUNT; ++x) {
parallel.batch(testFunction, nullptr, &atom);
}
parallel.batch(testFunction, &future, &atom);
future.wait();
while(!parallel.isQueueEmpty()){}
ASSERT_EQ(atom.load(), BATCH_TEST_COUNT + 1);
}
// Parses a parallel set of networks, defined by (<net><net>...).
Network* NetworkBuilder::ParseParallel(const StaticShape& input_shape,
char** str) {
Parallel* parallel = new Parallel("Parallel", NT_PARALLEL);
++*str;
Network* network = NULL;
while (**str != '\0' && **str != ')' &&
(network = BuildFromString(input_shape, str)) != NULL) {
parallel->AddToStack(network);
}
if (**str != ')') {
tprintf("Missing ) at end of (Parallel)!\n");
delete parallel;
return nullptr;
}
++*str;
return parallel;
}
void DustSystem::writequality() const
{
Log* log = find<Log>();
Units* units = find<Units>();
Parallel* parallel = find<ParallelFactory>()->parallel();
// Density metric
log->info("Calculating quality metric for the grid density...");
DustSystemDensityCalculator calc1(this, _Nrandom, _Ncells/5);
parallel->call(&calc1, _Nrandom);
log->info(" Mean value of density delta: "
+ QString::number(units->omassvolumedensity(calc1.meanDelta()*1e9))
+ " nano" + units->umassvolumedensity());
log->info(" Standard deviation of density delta: "
+ QString::number(units->omassvolumedensity(calc1.stddevDelta()*1e9))
+ " nano" + units->umassvolumedensity());
// Optical depth metric
log->info("Calculating quality metric for the optical depth in the grid...");
DustSystemDepthCalculator calc2(this, _Nrandom, _Ncells/50, _Nrandom*10);
parallel->call(&calc2, _Nrandom);
log->info(" Mean value of optical depth delta: " + QString::number(calc2.meanDelta()));
log->info(" Standard deviation of optical depth delta: " + QString::number(calc2.stddevDelta()));
// Output to file
QString filename = find<FilePaths>()->output("ds_quality.dat");
log->info("Writing quality metrics for the grid to " + filename + "...");
ofstream file(filename.toLocal8Bit().constData());
file << "Mean value of density delta: "
<< units->omassvolumedensity(calc1.meanDelta()) << ' '
<< units->umassvolumedensity().toStdString() << '\n'
<< "Standard deviation of density delta: "
<< units->omassvolumedensity(calc1.stddevDelta()) << ' '
<< units->umassvolumedensity().toStdString() << '\n';
file << "Mean value of optical depth delta: "
<< calc2.meanDelta() << '\n'
<< "Standard deviation of optical depth delta: "
<< calc2.stddevDelta() << '\n';
file.close();
log->info("File " + filename + " created.");
}
// Builds a set of 4 lstms with x and y reversal, running in true parallel.
Network* NetworkBuilder::BuildLSTMXYQuad(int num_inputs, int num_states) {
Parallel* parallel = new Parallel("2DLSTMQuad", NT_PAR_2D_LSTM);
parallel->AddToStack(new LSTM("L2DLTRDown", num_inputs, num_states,
num_states, true, NT_LSTM));
Reversed* rev = new Reversed("L2DLTRXRev", NT_XREVERSED);
rev->SetNetwork(new LSTM("L2DRTLDown", num_inputs, num_states, num_states,
true, NT_LSTM));
parallel->AddToStack(rev);
rev = new Reversed("L2DRTLYRev", NT_YREVERSED);
rev->SetNetwork(
new LSTM("L2DRTLUp", num_inputs, num_states, num_states, true, NT_LSTM));
Reversed* rev2 = new Reversed("L2DXRevU", NT_XREVERSED);
rev2->SetNetwork(rev);
parallel->AddToStack(rev2);
rev = new Reversed("L2DXRevY", NT_YREVERSED);
rev->SetNetwork(new LSTM("L2DLTRDown", num_inputs, num_states, num_states,
true, NT_LSTM));
parallel->AddToStack(rev);
return parallel;
}
TEST(Parallel_Test, Process_Object_Test_Large) {
reset_counters();
TestCls* values = new TestCls[DEFAULT_PARALLEL_THREAD_COUNT + 1];
for (unsigned x = 0; x < DEFAULT_PARALLEL_THREAD_COUNT + 1; ++x)
values[x] = x;
Future future;
parallel.process(values, &TestCls::operator*=, DEFAULT_PARALLEL_THREAD_COUNT + 1, 0, &future, 2);
future.wait();
for (unsigned x = 0; x < DEFAULT_PARALLEL_THREAD_COUNT + 1; ++x)
ASSERT_EQ(x * 2, values[x].value());
delete[] values;
}
TEST(Parallel_Test, Future_Test) {
reset_counters();
TestCls* values = new TestCls[DEFAULT_PARALLEL_THREAD_COUNT];
for (unsigned x = 0; x < DEFAULT_PARALLEL_THREAD_COUNT; ++x)
values[x] = x;
Future future;
parallel.process(values, &TestCls::operator*=, DEFAULT_PARALLEL_THREAD_COUNT, 0, &future, 2);
ASSERT_EQ(DEFAULT_PARALLEL_THREAD_COUNT, future.worker_count);
future.wait();
ASSERT_EQ(future.finished_count, future.worker_count);
delete[] values;
}
TEST(Parallel_Test, Process_Object_Test_Equal) {
reset_counters();
TestCls* values = new TestCls[DEFAULT_PARALLEL_THREAD_COUNT];
for (unsigned x = 0; x < DEFAULT_PARALLEL_THREAD_COUNT; ++x)
values[x] = x;
Future future;
parallel.process(values, &TestCls::operator*=, DEFAULT_PARALLEL_THREAD_COUNT, 0, &future, 2);
future.wait();
ASSERT_EQ(DEFAULT_PARALLEL_THREAD_COUNT, multiplication_assignment);
for (unsigned x = 0; x < DEFAULT_PARALLEL_THREAD_COUNT; ++x)
ASSERT_EQ(x * 2, values[x].value());
delete[] values;
}
// Parses an LSTM network, either individual, bi- or quad-directional.
Network* NetworkBuilder::ParseLSTM(const StaticShape& input_shape, char** str) {
bool two_d = false;
NetworkType type = NT_LSTM;
char* spec_start = *str;
int chars_consumed = 1;
int num_outputs = 0;
char key = (*str)[chars_consumed], dir = 'f', dim = 'x';
if (key == 'S') {
type = NT_LSTM_SOFTMAX;
num_outputs = num_softmax_outputs_;
++chars_consumed;
} else if (key == 'E') {
type = NT_LSTM_SOFTMAX_ENCODED;
num_outputs = num_softmax_outputs_;
++chars_consumed;
} else if (key == '2' && (((*str)[2] == 'x' && (*str)[3] == 'y') ||
((*str)[2] == 'y' && (*str)[3] == 'x'))) {
chars_consumed = 4;
dim = (*str)[3];
two_d = true;
} else if (key == 'f' || key == 'r' || key == 'b') {
dir = key;
dim = (*str)[2];
if (dim != 'x' && dim != 'y') {
tprintf("Invalid dimension (x|y) in L Spec!:%s\n", *str);
return nullptr;
}
chars_consumed = 3;
if ((*str)[chars_consumed] == 's') {
++chars_consumed;
type = NT_LSTM_SUMMARY;
}
} else {
tprintf("Invalid direction (f|r|b) in L Spec!:%s\n", *str);
return nullptr;
}
int num_states = strtol(*str + chars_consumed, str, 10);
if (num_states <= 0) {
tprintf("Invalid number of states in L Spec!:%s\n", *str);
return nullptr;
}
Network* lstm = nullptr;
if (two_d) {
lstm = BuildLSTMXYQuad(input_shape.depth(), num_states);
} else {
if (num_outputs == 0) num_outputs = num_states;
STRING name(spec_start, *str - spec_start);
lstm = new LSTM(name, input_shape.depth(), num_states, num_outputs, false,
type);
if (dir != 'f') {
Reversed* rev = new Reversed("RevLSTM", NT_XREVERSED);
rev->SetNetwork(lstm);
lstm = rev;
}
if (dir == 'b') {
name += "LTR";
Parallel* parallel = new Parallel("BidiLSTM", NT_PAR_RL_LSTM);
parallel->AddToStack(new LSTM(name, input_shape.depth(), num_states,
num_outputs, false, type));
parallel->AddToStack(lstm);
lstm = parallel;
}
}
if (dim == 'y') {
Reversed* rev = new Reversed("XYTransLSTM", NT_XYTRANSPOSE);
rev->SetNetwork(lstm);
lstm = rev;
}
return lstm;
}
Parallel::Parallel(const Parallel& orig) : refcount(0)
{
num_threads=orig.get_num_threads();
}
void PanDustSystem::write() const
{
DustSystem::write();
// If requested, output the interstellar radiation field in every dust cell to a data file
if (_writeISRF)
{
WavelengthGrid* lambdagrid = find<WavelengthGrid>();
Units* units = find<Units>();
// Create a text file
TextOutFile file(this, "ds_isrf", "ISRF");
// Write the header
file.writeLine("# Mean field intensities for all dust cells with nonzero absorption");
file.addColumn("dust cell index", 'd');
file.addColumn("x coordinate of cell center (" + units->ulength() + ")", 'g');
file.addColumn("y coordinate of cell center (" + units->ulength() + ")", 'g');
file.addColumn("z coordinate of cell center (" + units->ulength() + ")", 'g');
for (int ell=0; ell<_Nlambda; ell++)
file.addColumn("J_lambda (W/m3/sr) for lambda = "
+ QString::number(units->owavelength(lambdagrid->lambda(ell)))
+ " " + units->uwavelength(), 'g');
// Write one line for each dust cell with nonzero absorption
for (int m=0; m<_Ncells; m++)
{
double Ltotm = Labs(m);
if (Ltotm>0.0)
{
QList<double> values;
Position bfr = _grid->centralPositionInCell(m);
values << m << units->olength(bfr.x()) << units->olength(bfr.y()) << units->olength(bfr.z());
for (auto J : meanintensityv(m)) values << J;
file.writeRow(values);
}
}
}
// If requested, output temperate map(s) along coordiate axes cuts
if (_writeTemp)
{
// construct a private class instance to do the work (parallelized)
WriteTemp wt(this);
Parallel* parallel = find<ParallelFactory>()->parallel();
// get the dimension of the dust grid
int dimDust = _grid->dimension();
// Create an assigner that assigns all the work to the root process
RootAssigner* assigner = new RootAssigner(0);
assigner->assign(Np);
// For the xy plane (always)
{
wt.setup(1,1,0);
parallel->call(&wt, assigner);
wt.write();
}
// For the xz plane (only if dimension is at least 2)
if (dimDust >= 2)
{
wt.setup(1,0,1);
parallel->call(&wt, assigner);
wt.write();
}
// For the yz plane (only if dimension is 3)
if (dimDust == 3)
{
wt.setup(0,1,1);
parallel->call(&wt, assigner);
wt.write();
}
}
}
cchem::cc::Energy cchem::cc::energy(Wavefunction wf, Runtime &rt,
const std::string &method) {
using utility::make_array;
wf.sort();
wf.reverse();
double cutoff = rt.get<double>("/cc/integrals/cutoff", 1e-10);
::integrals::Screening screening(wf.basis(), cutoff);
size_t N = wf.basis().size();
size_t no = wf.active().size();
size_t nv = wf.virtuals().size();
// std::cout << "atomic orbitals: " << N << std::endl;
// std::cout << "occupied orbitals: " << no << std::endl;
// std::cout << "virtual orbitals: " << nv << std::endl;
Parallel pe;
#define RT_ARRAYS_ALLOCATE(name, dims) \
if (!rt.arrays().contains(name)) { \
rt.arrays().allocate<double>(name, make_array dims, pe); \
pe.cout() << *rt.arrays().find<Array>(name) << std::endl; \
}
// first ones may be allocated in faster storage
RT_ARRAYS_ALLOCATE("cc.t(ijab)", (no,no,nv,nv));
RT_ARRAYS_ALLOCATE("cc.u(ijab)", (no,no,N,N));
RT_ARRAYS_ALLOCATE("integrals.v(ijab)", (no,no,nv+no,N));
size_t B = wf.basis().max().size();
RT_ARRAYS_ALLOCATE("integrals.v(iqrs)", (no,B,N,no+nv));
RT_ARRAYS_ALLOCATE("integrals.v(ijka)", (no,no,no,nv));
RT_ARRAYS_ALLOCATE("integrals.v(ijkl)", (no,no,no,no));
RT_ARRAYS_ALLOCATE("integrals.v(iajb)", (no,nv,no,N));
{
Map<Array*> V;
V["ijkl"] = rt.arrays().find<Array>("integrals.v(ijkl)");
V["ijka"] = rt.arrays().find<Array>("integrals.v(ijka)");
V["ijab"] = rt.arrays().find<Array>("integrals.v(ijab)");
V["iajb"] = rt.arrays().find<Array>("integrals.v(iajb)");
// V["iabc"] = rt.arrays().find<Array>("integrals.v(iabc)");
V["iqrs"] = rt.arrays().find<Array>("integrals.v(iqrs)");
utility::timer timer;
double cutoff = rt.get<double>("/cc/integrals/cutoff", 1e-10);
integrals::Screening screening(wf.basis(), cutoff);
cc::integrals(pe, wf, V, screening);
pe.cout() << "integrals time: " << timer << std::endl;
}
if (method == "ccsd")
rt.arrays().erase<Array>("integrals.v(iqrs)");
Map<const Array*> V;
V["ijkl"] = rt.arrays().find<Array>("integrals.v(ijkl)");
V["ijka"] = rt.arrays().find<Array>("integrals.v(ijka)");
V["ijab"] = rt.arrays().find<Array>("integrals.v(ijab)");
V["iajb"] = rt.arrays().find<Array>("integrals.v(iajb)");
// V["iabc"] = rt.arrays().find<Array>("integrals.v(iabc)");
Map<Array*> A;
A["t(ijab)"] = rt.arrays().find<Array>("cc.t(ijab)");
A["u(ijab)"] = rt.arrays().find<Array>("cc.u(ijab)");
cc::Energy E;
E["mp2"] = mp2(pe, wf, *V["ijab"], *A["t(ijab)"]);
pe.cout() << "mbpt(2) energy: "
<< std::setprecision(10)
<< E["mp2"] << std::endl;
RT_ARRAYS_ALLOCATE("cc.vt2(ijab)", (no,no,N,N));
RT_ARRAYS_ALLOCATE("cc.vt1(ijab)", (no,no,N,N));
RT_ARRAYS_ALLOCATE("cc.vt1\'", (no,no,N,N));
RT_ARRAYS_ALLOCATE("cc.vt1\"", (no,no,N,N));
RT_ARRAYS_ALLOCATE("cc.t(ia)", (no, nv));
A["t(ia)"] = rt.arrays().find<Array>("cc.t(ia)");
A["vt1"] = rt.arrays().find<Array>("cc.vt1(ijab)");
A["vt2"] = rt.arrays().find<Array>("cc.vt2(ijab)");
A["vt1\'"] = rt.arrays().find<Array>("cc.vt1\'");
A["vt1\""] = rt.arrays().find<Array>("cc.vt1\"");
std::auto_ptr<DIIS> diis;
if (pe.rank() == 0) {
File::Group fg = rt.file("cc").create_group("diis");
diis.reset(new DIIS(no, nv, fg, rt.get<int>("/cc/diis/max", 5)));
}
E["ccsd"] = sd(rt).energy(pe, wf, V, A, diis.get());
rt.arrays().erase<Array>("cc.vt2(ijab)");
rt.arrays().erase<Array>("cc.vt1(ijab)");
rt.arrays().erase<Array>("cc.vt1\"");
rt.arrays().erase<Array>("cc.vt1\'");
V.clear();
A.clear();
if (method == "ccsd(t)") {
Map<Array*> V;
RT_ARRAYS_ALLOCATE("integrals.v(iabc)", (no,nv,N,nv));
V["iqrs"] = rt.arrays().find<Array>("integrals.v(iqrs)");
V["iabc"] = rt.arrays().find<Array>("integrals.v(iabc)");
{
utility::timer timer;
double cutoff = rt.get<double>("/cc/integrals/cutoff", 1e-10);
integrals::Screening screening(wf.basis(), cutoff);
cc::integrals(pe, wf, V, screening);
pe.cout() << "integrals time: " << timer << std::endl;
}
V["ijka"] = rt.arrays().find<Array>("integrals.v(ijka)");
V["ijab"] = rt.arrays().find<Array>("integrals.v(ijab)");
Map<Array*> t;
t["ia"] = rt.arrays().find<Array>("cc.t(ia)");
t["ijab"] = rt.arrays().find<Array>("cc.t(ijab)");
cc::Energy e = cc::triples::energy(pe, wf, V, t);
E["ccsd[t]"] = E["ccsd"] + e["[t]"];
E["ccsd(t)"] = E["ccsd[t]"] + e["(t)"];
pe.cout() << "ccsd[t]: " << E["ccsd[t]"] << std::endl;
pe.cout() << "ccsd(t): " << E["ccsd(t)"] << std::endl;
}
return E;
}
int main(){
Mecanismo P = Mecanismo(2);
cube I1__; I1__.zeros(3,3,2);
I1__.slice(0) << 0 << 0 << 0 << endr
<< 0 << 107.307e-6 + 146.869e-6 << 0 << endr
<< 0 << 0 << 107.307e-6 + 146.869e-6 << endr;
I1__.slice(1) << 0 << 0 << 0 << endr
<< 0 << 438.0e-6 << 0 << endr
<< 0 << 0 << 438.0e-6 << endr;
cube I2__; I2__.zeros(3,3,2);
I2__.slice(0) << 0 << 0 << 0 << endr
<< 0 << 107.307e-6 + 188.738e-6 << 0 << endr
<< 0 << 0 << 107.307e-6 + 188.738e-6 << endr;
I2__.slice(1) << 0 << 0 << 0 << endr
<< 0 << 301.679e-6 << 0 << endr
<< 0 << 0 << 301.679e-6 << endr;
Serial RR1 = Serial(2, {0.12, 0.16}, {0.06, 0.078},{0.062, 0.124}, I1__ , {0, 0, 9.8}, &fDH_RR);
Serial RR2 = Serial(2, {0.12, 0.16}, {0.06, 0.058},{0.062, 0.097}, I2__ , {0, 0, 9.8}, &fDH_RR);
Serial **RR_ = new Serial* [2];
RR_[0] = &RR1;
RR_[1] = &RR2;
//Matrizes que descrevem a arquitetura do mecanismo
double l0 = 0.05;
mat D_ = join_vert((mat)eye(2,2),2);
mat E_ = join_diag( Roty(0)(span(0,1),span(0,2)), Roty(PI)(span(0,1),span(0,2)) );
mat F_ = zeros(4,4);
vec f_ = {l0,0,-l0,0};
Parallel Robot = Parallel(2, &P, RR_, 2, {2,4}, D_, E_, F_, f_);
Reference RefObj = Reference(0.12, {0.08, 0.16}, {-0.08, 0.4});
//Plotar área de trabalho
uint nx = 96.0;
uint ny = 56.0;
double lx = 0.24;
double ly = 0.28;
double xi = -lx;
double xf = lx;
double yi = 0.0;
double yf = ly;
double dx = (xf-xi)/(nx-1);
double dy = (yf-yi)/(ny-1);
double dl = 0.5*(dx+dy);
Mat<int> M; M.zeros(nx,ny);
field<mat> fZ_(nx,ny);
field<mat> fMh_(nx,ny);
field<vec> fgh_(nx,ny);
field<vec> fa1_(nx,ny);
field<vec> fa2_(nx,ny);
field<vec> fa12_(nx,ny);
for(uint i=0; i<nx; i++){
for(uint j=0; j<ny; j++){
fZ_(i,j).zeros(2,2);
fMh_(i,j).zeros(2,2);
fgh_(i,j).zeros(2);
fa1_(i,j).zeros(2);
fa2_(i,j).zeros(2);
fa12_(i,j).zeros(2);
}
}
vec v1_ = {1,0};
vec v2_ = {0,1};
vec v12_ = {1,1};
double r = 0.07;
double x0 = 0.0;
double y0 = 0.17;
uint rows = nx;
uint cols = ny;
vec q0_ = {0.823167, 1.81774, 0.823167, 1.81774};
GNR2 gnr2 = GNR2("RK6", &Robot, 1e-6, 30);
//gnr2.Doit(q0_, {0.05,0.08});
//cout << gnr2.convergiu << endl;
//cout << gnr2.x_ << endl;
//cout << gnr2.res_ << endl;
//cout << gnr2.n << endl;
double x;
double y;
mat A2_;
for(uint i=0; i<rows; i++){
for(uint j=0; j<cols; j++){
x = xi + i*dx;
y = yi + j*dy;
gnr2.Doit(q0_, {x, y});
if(gnr2.convergiu){
q0_ = gnr2.x_;
A2_ = join_horiz(Robot.Ah_, join_horiz(Robot.Ao_.col(1), Robot.Ao_.col(3)) );
if(abs(det(Robot.Ao_)) < 1.6*1e-6 || abs(det(A2_)) < 1e-11 ) M(i,j) = 2;
else{
M(i,j) = 1;
Robot.Doit(Robot.q0_, join_vert(v1_, -solve(Robot.Ao_, Robot.Ah_*v1_)) );
fZ_(i,j) = Robot.Z_;
fMh_(i,j) = Robot.dy->Mh_;
fgh_(i,j) = Robot.dy->gh_;
fa1_(i,j) = Robot.dy->vh_;
Robot.Doit(Robot.q0_, Robot.C_*v2_);
fa2_(i,j) = Robot.dy->vh_;
Robot.Doit(Robot.q0_, Robot.C_*v12_);
fa12_(i,j) = Robot.dy->vh_ - fa1_(i,j) - fa2_(i,j);
}
}
gnr2.convergiu = false;
if( ((x - x0)*(x - x0) + (y - y0)*(y - y0) <= (r+dl)*(r+dl) ) && ((x - x0)*(x - x0) + (y - y0)*(y - y0) >= (r-dl)*(r-dl) ) && (M(i,j) != 2) )
M(i,j) = 3;
}
}
for(uint i=0; i<rows; i++){
for(uint j=0; j<cols; j++){
cout << M(i,j) << ";" ;
if(j==cols-1) cout << endl;
}
}
fZ_.save("fZ_field");
fMh_.save("fMh_field");
fgh_.save("fgh_field");
fa1_.save("fa1_field");
fa2_.save("fa2_field");
fa12_.save("fa12_field");
return 0;
}
void PanDustSystem::write() const
{
DustSystem::write();
PeerToPeerCommunicator* comm = find<PeerToPeerCommunicator>();
bool dataParallel = comm->dataParallel();
// If requested, output the interstellar radiation field in every dust cell to a data file
if (_writeISRF)
{
WavelengthGrid* lambdagrid = find<WavelengthGrid>();
Units* units = find<Units>();
// Create a text file
TextOutFile file(this, "ds_isrf", "ISRF");
// Write the header
file.writeLine("# Mean field intensities for all dust cells with nonzero absorption");
file.addColumn("dust cell index", 'd');
file.addColumn("x coordinate of cell center (" + units->ulength() + ")", 'g');
file.addColumn("y coordinate of cell center (" + units->ulength() + ")", 'g');
file.addColumn("z coordinate of cell center (" + units->ulength() + ")", 'g');
for (int ell=0; ell<_Nlambda; ell++)
file.addColumn("J_lambda (W/m3/sr) for lambda = "
+ QString::number(units->owavelength(lambdagrid->lambda(ell)))
+ " " + units->uwavelength(), 'g');
// Write one line for each dust cell with nonzero absorption
for (int m=0; m<_Ncells; m++)
{
if (!dataParallel)
{
double Ltotm = Labs(m);
if (Ltotm>0.0)
{
QList<double> values;
Position bfr = _grid->centralPositionInCell(m);
values << m << units->olength(bfr.x()) << units->olength(bfr.y()) << units->olength(bfr.z());
for (auto J : meanintensityv(m)) values << J;
file.writeRow(values);
}
}
else // for distributed mode
{
QList<double> values;
Position bfr = _grid->centralPositionInCell(m);
values << m << units->olength(bfr.x()) << units->olength(bfr.y()) << units->olength(bfr.z());
// the correct process gets Jv
Array Jv(_Nlambda);
if (_assigner->validIndex(m)) Jv = meanintensityv(m);
// and broadcasts it
int sender = _assigner->rankForIndex(m);
comm->broadcast(Jv,sender);
if (Jv.sum()>0)
{
for (auto J : Jv) values << J;
file.writeRow(values);
}
}
}
}
// If requested, output temperature map(s) along coordinate axes and temperature data for each dust cell
if (_writeTemp)
{
// Parallelize the calculation over the threads
Parallel* parallel = find<ParallelFactory>()->parallel();
// If the necessary data is distributed over the processes, do the calculation on all processes.
// Else, let the root do everything.
bool isRoot = comm->isRoot();
// Output temperature map(s) along coordinate axes
{
// Construct a private class instance to do the work (parallelized)
WriteTempCut wt(this);
// Get the dimension of the dust grid
int dimDust = _grid->dimension();
// For the xy plane (always)
{
wt.setup(1,1,0);
if (dataParallel) parallel->call(&wt, Np);
else if (isRoot) parallel->call(&wt, Np);
wt.write();
}
// For the xz plane (only if dimension is at least 2)
if (dimDust >= 2)
{
wt.setup(1,0,1);
if (dataParallel) parallel->call(&wt, Np);
else if (isRoot) parallel->call(&wt, Np);
wt.write();
}
// For the yz plane (only if dimension is 3)
if (dimDust == 3)
{
wt.setup(0,1,1);
if (dataParallel) parallel->call(&wt, Np);
else if (isRoot) parallel->call(&wt, Np);
wt.write();
}
}
// Output a text file with temperature data for each dust cell
{
find<Log>()->info("Calculating indicative dust temperatures for each cell...");
// Construct a private class instance to do the work (parallelized)
WriteTempData wt(this);
// Call the body on the right cells. If everything is available, no unnecessary communication will be done.
if (dataParallel)
{
// Calculate the temperature for the cells owned by this process
parallel->call(&wt, _assigner);
}
else if (isRoot)
{
// Let root calculate it for everything
parallel->call(&wt, _Ncells);
}
wt.write();
}
}
}