/* Prints graph in dot language */
std::ostream& DirectionalGraph::print( std::ostream& out ) const{
out << "digraph DataFlowGraph{" << std::endl;
/* Print nodes */
const_node_iterator node = getBeginNode();
const_node_iterator endNode = getEndNode();
for( ; node != endNode; node++ ){
out << *node << std::endl;
}
/* Print arrows between nodes */
node = getBeginNode();
endNode = getEndNode();
for( ; node != endNode; node++ ){
const node_set outArrows = getOutNodesSet(*node);
const_node_iterator nodeOut = outArrows.begin();
const_node_iterator endNodeOut = outArrows.end();
for( ; nodeOut != endNodeOut; nodeOut++ ){
out << *node << "->" << *nodeOut << std::endl;
}
}
out << '}' << std::endl;
return out;
}
void BranchInfo::_insertVariable(node_type &variable, node_set &variables)
{
if ((variables.find(variable) != variables.end()) || (_divergGraph.isDivNode(variable))) {
return;
}
#ifdef DEBUG
std::cout << "Variable " << variable << " taints: " << std::endl;
#endif
node_set newVariables;
newVariables.insert(variable);
while (newVariables.size() > 0) {
node_type newVar = *newVariables.begin();
variables.insert(newVar);
newVariables.erase(newVar);
#ifdef DEBUG
std::cout << newVar << ' ';
#endif
node_set dependences = _divergGraph.getOutNodesSet(newVar);
node_set::const_iterator depend = dependences.begin();
node_set::const_iterator endDepend = dependences.end();
for (; depend != endDepend; depend++) {
if ((variables.find(*depend) == variables.end()) && (!_divergGraph.isDivNode(*depend))) {
newVariables.insert(*depend);
}
}
}
#ifdef DEBUG
std::cout << std::endl;
#endif
}
double
compute_deformed_length(node_set& nodes, EquationSystems* equation_systems)
{
System& X_system = equation_systems->get_system<System>(IBFEMethod::COORDS_SYSTEM_NAME);
const unsigned int X_sys_num = X_system.number();
NumericVector<double>* X_vec = X_system.solution.get();
AutoPtr<NumericVector<Number> > X_serial_vec = NumericVector<Number>::build(X_vec->comm());
X_serial_vec->init(X_vec->size(), true, SERIAL);
X_vec->localize(*X_serial_vec);
// Get the current positions of the points.
std::vector<IBTK::Point> points;
points.reserve(nodes.size());
IBTK::Point p;
for (typename node_set::iterator it = nodes.begin(); it != nodes.end(); ++it)
{
Node* node = *it;
for (unsigned int d = 0; d < NDIM; ++d)
{
p(d) = (*X_serial_vec)(node->dof_number(X_sys_num, d, 0));
}
points.push_back(p);
}
// Compute the length of the center line.
IBTK::Point p0, p1;
double l = 0.0;
std::vector<IBTK::Point>::iterator it = points.begin();
p0 = *it;
++it;
for (; it != points.end(); ++it)
{
p1 = *it;
double l_segment_sq = 0.0;
for (int d = 0; d < NDIM; ++d)
{
l_segment_sq += pow(p0(d) - p1(d), 2.0);
}
l += sqrt(l_segment_sq);
p0 = p1;
}
return l;
}
double
compute_displaced_area(node_set& nodes, EquationSystems* equation_systems)
{
System& X_system = equation_systems->get_system<System>(IBFEMethod::COORDS_SYSTEM_NAME);
const unsigned int X_sys_num = X_system.number();
NumericVector<double>* X_vec = X_system.solution.get();
AutoPtr<NumericVector<Number> > X_serial_vec = NumericVector<Number>::build(X_vec->comm());
X_serial_vec->init(X_vec->size(), true, SERIAL);
X_vec->localize(*X_serial_vec);
// Get the current positions of the points.
std::vector<IBTK::Point> points;
points.reserve(nodes.size());
IBTK::Point p;
for (typename node_set::iterator it = nodes.begin(); it != nodes.end(); ++it)
{
Node* node = *it;
for (unsigned int d = 0; d < NDIM; ++d)
{
p(d) = (*X_serial_vec)(node->dof_number(X_sys_num, d, 0));
}
points.push_back(p);
}
// Compute the area of the polygon.
IBTK::Point p0, p1;
double A2 = 0.0;
p0 = *points.rbegin();
for (std::vector<IBTK::Point>::iterator it = points.begin(); it != points.end(); ++it)
{
p1 = *it;
A2 += p0(0) * p1(1) - p0(1) * p1(0);
p0 = p1;
}
return 0.5 * abs(A2);
}
//寻找最短路径，最短路径存储在path中。返回值为路径长度
int Dijkstra(path_vec& path)
{
//初始化各个变量
path.clear();
dist2start.clear();
open_set.clear();
close_set.clear();
close_set.insert(start_node);
for(int i=0; i<node_count; i++)
{
if(i != start_node)
open_set.insert(i);
dist2start[i] = std::make_pair(start_node, GetCrtMap(start_node,i) );
}
//开始寻路
while(!open_set.empty())
{
path_pair min_cost = std::make_pair(start_node, BIG_NUMBER);
int min_cost_node = -1;
for(note_set_iter nodeToDo = open_set.begin();
nodeToDo != open_set.end();
nodeToDo++)
{
for(note_set_iter nodeDone = close_set.begin();
nodeDone != close_set.end();
nodeDone++)
{
int tmp_cost = dist2start[*nodeDone].second + GetCrtMap(*nodeDone, *nodeToDo);
if(min_cost.second >= tmp_cost)
{
min_cost.first = *nodeDone;
min_cost.second = tmp_cost;
min_cost_node = *nodeToDo;
}
}
}
assert(min_cost_node != start_node);
if(min_cost_node < 0)
return -1;
open_set.erase(min_cost_node);
close_set.insert(min_cost_node);
dist2start[min_cost_node] = (min_cost);
// update nodes connected with min_cost_node
for(note_set_iter nodeRel = open_set.begin();
nodeRel != open_set.end();
nodeRel++)
{
int tmp_dist = GetCrtMap(min_cost_node, *nodeRel);
if(tmp_dist < BIG_NUMBER && min_cost.second + tmp_dist < dist2start[*nodeRel].second)
{
dist2start[*nodeRel].first = min_cost_node;
dist2start[*nodeRel].second = min_cost.second + tmp_dist < dist2start[*nodeRel].second;
}
}
}
//输出路径
int crtNode = end_node;
do
{
path.insert(path.begin(), crtNode);
crtNode = dist2start[crtNode].first;
}while( crtNode != start_node );
path.insert(path.begin(), start_node);
return dist2start[end_node].second;
}
/*!\brief Prints the divergence graph in dot language */
std::ostream& DivergenceGraph::print( std::ostream& out ) const{
using ir::PTXOperand;
out << "digraph DirtyVariablesGraph{" << endl;
/* Print dirt sources */
map<PTXOperand::SpecialRegister, node_set>::const_iterator dirt = _specials.begin();
map<PTXOperand::SpecialRegister, node_set>::const_iterator endDirt = _specials.end();
out << "//Dirt sources:" << endl;
for( ; dirt != endDirt; dirt++ ){
if( dirt->second.size() ){
out << getSpecialName(dirt->first) << "[style=filled, fillcolor = \"" << (isDivSource(dirt->first)?"tomato":"lightblue") << "\"]" << endl;
}
}
/* Print nodes */
out << "//Nodes:" << endl;
const_node_iterator node = getBeginNode();
const_node_iterator endNode = getEndNode();
for( ; node != endNode; node++ ){
out << *node << " [style=filled, fillcolor = \"" << (isDivNode(*node)?"lightyellow":"white") << "\"]" << endl;
}
out << endl;
/* Print edges coming out of dirt sources */
dirt = _specials.begin();
endDirt = _specials.end();
out << "//Dirt out edges:" << endl;
for( ; dirt != endDirt; dirt++ ){
if( dirt->second.size() ){
node = dirt->second.begin();
endNode = dirt->second.end();
for( ; node != endNode; node++ ){
out << getSpecialName(dirt->first) << "->" << *node << "[color = \"" << (isDivSource(dirt->first)?"red":"blue") << "\"]" << endl;
}
}
}
/* Print arrows between nodes */
node = getBeginNode();
endNode = getEndNode();
out << "//Nodes edges:" << endl;
for( ; node != endNode; node++ ){
const node_set outArrows = getOutNodesSet(*node);
const_node_iterator nodeOut = outArrows.begin();
const_node_iterator endNodeOut = outArrows.end();
for( ; nodeOut != endNodeOut; nodeOut++ ){
out << *node << "->" << *nodeOut << endl;
}
}
out << '}';
return out;
}