double bndIntegration(const pointSet& mesh, const scalarField& sf, int bnd)
{
double sum = 0.0;
int n = mesh.getNbBndPoints();
int n1, n2;
double dx;
for (int i=0; i<n; i++)
{
if (mesh.getBND(i) == bnd)
{
mesh.findLeftRightBndPoint(i, n1, n2);
// Check first neighbour
if (n1 > i)
{
dx = mesh.dist(i,n1);
sum += 0.5*(sf(i)+sf(n1)) * dx;
}
if (n2 > i)
{
dx = mesh.dist(i,n2);
sum += 0.5*(sf(i)+sf(n2)) * dx;
}
}
}
return sum;
}
refinement::refinement(const pointSet& mesh, double factor)
{
h = 0.5*factor*mesh.getMinSL();
refValue = NULL;
setNewMesh(mesh);
double SLmax = mesh.getMaxSL();
for (int i=0; i<nbXquads*nbYquads; i++)
refValue[i] = SLmax;
}
void refinement::setNewMesh(const pointSet& mesh)
{
mesh.getBoundingBox(xmin, xmax, ymin, ymax);
nbXquads = int( (xmax-xmin)/h ) +2;
nbYquads = int( (ymax-ymin)/h ) +2;
delete[] refValue;
refValue = new double[nbXquads*nbYquads];
}
void writePointSet
(
const bool binary,
const vtkMesh& vMesh,
const pointSet& set,
const fileName& fileName
)
{
std::ofstream ostr(fileName.c_str());
writeFuns::writeHeader
(
ostr,
binary,
set.name()
);
ostr<< "DATASET POLYDATA" << std::endl;
//------------------------------------------------------------------
//
// Write topology
//
//------------------------------------------------------------------
// Write points
ostr<< "POINTS " << set.size() << " float" << std::endl;
DynamicList<floatScalar> ptField(3*set.size());
writeFuns::insert
(
UIndirectList<point>(vMesh.mesh().points(), set.toc())(),
ptField
);
writeFuns::write(ostr, binary, ptField);
//-----------------------------------------------------------------
//
// Write data
//
//-----------------------------------------------------------------
// Write faceID
ostr
<< "POINT_DATA " << set.size() << std::endl
<< "FIELD attributes 1" << std::endl;
// Cell ids first
ostr<< "pointID 1 " << set.size() << " int" << std::endl;
labelList pointIDs(set.toc());
writeFuns::write(ostr, binary, pointIDs);
}
void approximatedNormals(const pointSet& mesh, vector<int> neighb, int pnb, double& nx_out, double& ny_out)
{
if (mesh.getBND(pnb)==0)
throw mfpmExcept(0);
int NP = neighb.size();
double sl2 = mesh.getSL(pnb);
// New approach
double sumX = 0, sumY = 0;
double nx, ny;
int count = 0;
for (int i=0; i<NP; i++)
{
if (pnb!=neighb[i] )
{
nx = (mesh.y(pnb)-mesh.y(neighb[i]));
ny = -(mesh.x(pnb)-mesh.x(neighb[i]));
double weight = exp(-5.0* (nx*nx+ny*ny) / sl2);
double length = sqrt(nx*nx+ny*ny);
nx /= length;
ny /= length;
if ( nx*mesh.getNormal(0,pnb) + ny*mesh.getNormal(1,pnb) < 0)
{
nx *= -1.0;
ny *= -1.0;
}
sumX += nx*weight;
sumY += ny*weight;
}
}
sumX /= NP-1;
sumY /= NP-1;
double length = sqrt(sumX*sumX+sumY*sumY);
if (length==0)
throw mfpmExcept(1000);
nx_out = sumX / length;
ny_out = sumY / length;
}
void Foam::vtkPV3Foam::addPointSetMesh
(
const fvMesh& mesh,
const pointSet& pSet,
vtkPolyData* vtkmesh
)
{
if (debug)
{
Info<< "entered add point set mesh" << endl;
}
// Use all points: support for inactive points and faces.
// HJ, 28/Mar/2009
const pointField& meshPoints = mesh.allPoints();
vtkPoints *vtkpoints = vtkPoints::New();
vtkpoints->Allocate(pSet.size());
forAllConstIter(pointSet, pSet, iter)
{
vtkPV3FoamInsertNextPoint(vtkpoints, meshPoints[iter.key()]);
}
int partialNeumannMatEntry(const pointSet& mesh, int pnb, const Array& active, Array& entries, bool forceLowOrder)
{
int NP = mesh.getNIDX(pnb);
double b[NP];
double A[6*NP];
double weight[NP];
int arrayEntry[NP];
if (NP < 4)
throw mfpmExcept(20);
double sl2 = pow(mesh.getSL(pnb),2);
b[0] = 0*3.0 / mesh.getSL(pnb);
b[1] = 0.0;
b[2] = mesh.getNormal(0,pnb);
b[3] = mesh.getNormal(1,pnb);
b[4] = 0.0;
b[5] = 0.0;
b[6] = 0.0;
int orderFac = 6;
if (NP<6 | forceLowOrder)
orderFac = 4;
int idx, mi;
int diagEntry=0;
double h, k;
int cnt = 0;
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = orderFac*cnt;
if (idx!=pnb)
{
if (active(i) > 0.5)
{
h = mesh.x(idx) - mesh.x(pnb);
k = mesh.y(idx) - mesh.y(pnb);
weight[cnt] = exp(-2.0 * (h*h+k*k)/sl2 );
A[mi+0] = 0.0;
A[mi+1] = 1.0 * weight[cnt];
A[mi+2] = h * weight[cnt];
A[mi+3] = k * weight[cnt];
if (orderFac>4)
{
A[mi+4] = h*h * weight[cnt];
A[mi+5] = h*k * weight[cnt];
A[mi+6] = k*k * weight[cnt];
}
arrayEntry[cnt] = i;
cnt++;
}
}
else
{
weight[cnt] = 1.0;
A[mi+0] = 1.0;
A[mi+1] = 1.0;
A[mi+2] = 0.0;
A[mi+3] = 0.0;
if (orderFac>4)
{
A[mi+4] = 0.0;
A[mi+5] = 0.0;
}
arrayEntry[cnt] = i;
cnt++;
}
}
int n = orderFac;
int m = cnt;
double work[2*(m+n)];
int info, workl = 2*(m+n);
int one = 1;
char TN[] ="N";
dgels_(TN, &n, &m, &one, A, &n, b, &m, work, &workl, &info);
if (info!=0)
{
cout << "Error solving least squares: laplaceMatEntry!" << endl;
throw mfpmExcept(27);
}
entries = 0.0;
for (int i=0; i<cnt; i++)
{
entries(arrayEntry[i]) = b[i]*weight[i];
}
//~ // Test operator:
//~ double tmp = entries(diagEntry);
//~ for (int i=0; i<NP; i++)
//~ {
//~ if (abs(entries(i))>tmp)
//~ {
//~ //cout << "Invalid Neumann matrix entries!!" << endl;
//~ //return -1;
//~ }
//~ }
//~ double sum = 0;
//~ for (int i=0; i<NP; i++)
//~ {
//~ idx = mesh.getIDX(pnb,i);
//~ sum += entries(i)*(mesh.x(idx)+mesh.y(idx));
//~ }
//~ if ( (sum - mesh.getNormal(0,pnb) - mesh.getNormal(1,pnb)) > 1e-7 )
//~ {
//~ //cout << "Invalid Neumann matrix entries!!" << endl;
//~ return -2;
//~ }
return 0;
}
int laplaceMatEntry(const pointSet& mesh, int pnb, Array& entries)
{
int NP = mesh.getNIDX(pnb);
double b[NP];
double A[7*NP];
double weight[NP];
if (NP < 7)
throw mfpmExcept(20);
b[0] = -10.0 / pow(mesh.getSL(pnb),2);
b[1] = 0.0;
b[2] = 0.0;
b[3] = 0.0;
b[4] = 2.0;
b[5] = 2.0;
b[6] = 0.0;
int diagEntry;
int idx, mi;
double h, k;
double sl2 = pow(mesh.getSL(pnb),2);
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = 7*i;
if (idx!=pnb)
{
h = mesh.x(idx) - mesh.x(pnb);
k = mesh.y(idx) - mesh.y(pnb);
weight[i] = exp(-3.0 * (h*h+k*k)/sl2 );
A[mi+0] = 0.0;
A[mi+1] = 1.0 * weight[i];
A[mi+2] = h * weight[i];
A[mi+3] = k * weight[i];
A[mi+4] = h*h * weight[i];
A[mi+5] = k*k * weight[i];
A[mi+6] = h*k * weight[i];
}
else
{
diagEntry = i;
weight[i] = 1.0;
A[mi+0] = 1.0;
A[mi+1] = 1.0;
A[mi+2] = 0.0;
A[mi+3] = 0.0;
A[mi+4] = 0.0;
A[mi+5] = 0.0;
A[mi+6] = 0.0;
}
}
int n = 7;
int m = NP;
double work[m+n];
int info, workl = m+n;
int one = 1;
char TN[] = "N";
dgels_(TN, &n, &m, &one, A, &n, b, &m, work, &workl, &info);
if (info!=0)
{
cout << "Error solving least squares: laplaceMatEntry!" << endl;
throw mfpmExcept(27);
}
for (int i=0; i<NP; i++)
{
entries(i) = b[i]*weight[i];
}
//~ // Check for diagonally dominance
//~ double diagEnt = abs(entries(diagEntry));
//~ double sumte = 0;
//~ cout << "Entry: " << pnb << endl;
//~ for (int i=0; i<NP; i++)
//~ {
//~ if ( i != diagEntry )
//~ {
//~ sumte += abs(entries(i));
//~ cout << entries(i) << " ";
//~ }
//~ else
//~ cout << " * " << entries(i) << " * ";
//~ }
//~ cout << endl;
//~ cout << "LAPDiff: " << diagEnt << " > " << sumte << " = " << (sumte < diagEnt) << endl;
// Test operator:
double sum = 0;
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
sum += entries(i)*(mesh.x(idx)*mesh.x(idx)+mesh.y(idx)*mesh.y(idx));
}
if ( abs(sum - 4.0) > 1e-7 )
{
return -2;
}
return 0;
}
int neumannMatEntry(const pointSet& mesh, int pnb, Array& entries, bool forceLowOrder)
{
int NP = mesh.getNIDX(pnb);
double b[NP];
double A[6*NP];
double weight[NP];
if (NP < 4)
throw mfpmExcept(20);
double sl2 = pow(mesh.getSL(pnb),2);
b[0] = 3.0 / mesh.getSL(pnb);
b[1] = 0.0;
b[2] = mesh.getNormal(0,pnb);
b[3] = mesh.getNormal(1,pnb);
b[4] = 0.0;
b[5] = 0.0;
int orderFac = 6;
if (NP<6 | forceLowOrder)
orderFac = 4;
int idx, mi;
int diagEntry=0;
double h, k;
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = orderFac*i;
if (idx!=pnb)
{
h = mesh.x(idx) - mesh.x(pnb);
k = mesh.y(idx) - mesh.y(pnb);
weight[i] = exp(-2.0 * (h*h+k*k)/sl2 );
A[mi+0] = 0.0;
A[mi+1] = 1.0 * weight[i];
A[mi+2] = h * weight[i];
A[mi+3] = k * weight[i];
if (orderFac>4)
{
A[mi+4] = h*h * weight[i];
A[mi+5] = k*k * weight[i];
}
}
else
{
diagEntry = i;
weight[i] = 1.0;
A[mi+0] = 1.0;
A[mi+1] = 1.0;
A[mi+2] = 0.0;
A[mi+3] = 0.0;
if (orderFac>4)
{
A[mi+4] = 0.0;
A[mi+5] = 0.0;
}
}
}
int n = orderFac;
int m = NP;
double work[m+n];
int info, workl = m+n;
int one = 1;
char TN[] ="N";
dgels_(TN, &n, &m, &one, A, &n, b, &m, work, &workl, &info);
if (info!=0)
{
cout << "Error solving least squares: laplaceMatEntry!" << endl;
throw mfpmExcept(27);
}
for (int i=0; i<NP; i++)
{
entries(i) = b[i]*weight[i];
}
// Test operator:
double tmp = entries(diagEntry);
for (int i=0; i<NP; i++)
{
if (abs(entries(i))>tmp)
{
//cout << "Invalid Neumann matrix entries!!" << endl;
//return -1;
}
}
double sum = 0;
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
sum += entries(i)*(mesh.x(idx)+mesh.y(idx));
}
if ( (sum - mesh.getNormal(0,pnb) - mesh.getNormal(1,pnb)) > 1e-7 )
{
//cout << "Invalid Neumann matrix entries!!" << endl;
return -2;
}
return 0;
}
int gradMatEntry(const pointSet& mesh, int pnb, Array& gradX, Array& gradY, int order)
{
int orderFac;
int NP = mesh.getNIDX(pnb);
if (order==1 & NP>=4)
orderFac = 4;
else if (order==2 & NP>=7)
orderFac = 7;
else if (order==3 & NP>=11)
orderFac = 11;
else if (order==4 & NP>=16)
orderFac = 16;
else
throw mfpmExcept(20);
double b[2*NP];
double A[16*NP];
double weight[NP];
if (NP < 4)
throw mfpmExcept(20);
double sl = mesh.getSL(pnb);
double sl2 = pow(sl,2);
double alpha = sl;
// GradX
b[0] = 0.0;
b[1] = 0.0;
b[2] = 1.0 / alpha;
for (int i=3; i<orderFac; i++)
b[i] = 0.0;
// GradY
b[NP+0] = 0.0;
b[NP+1] = 0.0;
b[NP+2] = 0.0;
b[NP+3] = 1.0 / alpha;
for (int i=4; i<orderFac; i++)
b[NP+i] = 0.0;
int diagEntry;
int idx, mi;
double h, k;
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = orderFac*i;
if (idx!=pnb)
{
h = mesh.x(idx) - mesh.x(pnb);
k = mesh.y(idx) - mesh.y(pnb);
weight[i] = exp(-2.0 * (h*h+k*k)/sl2 );
h /= alpha;
k /= alpha;
A[mi+0] = 0.0;
A[mi+1] = 1.0 * weight[i];
A[mi+2] = h * weight[i];
A[mi+3] = k * weight[i];
if (orderFac>4)
{
A[mi+4] = h*h * weight[i];
A[mi+5] = k*k * weight[i];
A[mi+6] = h*k * weight[i];
}
if (orderFac>7)
{
A[mi+7] = h*h*h *weight[i];
A[mi+8] = h*h*k *weight[i];
A[mi+9] = h*k*k *weight[i];
A[mi+10] = k*k*k *weight[i];
}
if (orderFac>11)
{
A[mi+11] = h*h*h*h *weight[i];
A[mi+12] = h*h*h*k *weight[i];
A[mi+13] = h*h*k*k *weight[i];
A[mi+14] = h*k*k*k *weight[i];
A[mi+15] = k*k*k*k *weight[i];
}
}
else
{
diagEntry = i;
weight[i] = 1.0;
A[mi+0] = 1.0;
A[mi+1] = 1.0;
for (int i=2; i<orderFac; i++)
A[mi+i] = 0.0;
}
}
int n = orderFac;
int m = NP;
int workl = 3*(m+n);
double work[workl];
int info;
int nrhs = 2;
char TN[] = "N";
dgels_(TN, &n, &m, &nrhs, A, &n, b, &m, work, &workl, &info);
if (info!=0)
{
cout << "Error solving least squares: laplaceMatEntry!" << endl;
throw mfpmExcept(27);
}
for (int i=0; i<NP; i++)
{
gradX(i) = b[i]*weight[i];
gradY(i) = b[NP+i]*weight[i];
}
// Test operator:
double sum1 = 0;
double sum2 = 0;
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
sum1 += gradX(i)*(mesh.x(idx)+mesh.y(idx));
sum2 += gradY(i)*(mesh.x(idx)+mesh.y(idx));
}
if ( (sum1 - 1.0) > 1e-7 )
{
return -1;
}
if ( (sum2 - 1.0) > 1e-7 )
{
return -2;
}
return 0;
}
int biLaplaceMatEntry(const pointSet& mesh, int pnb, Array& entries)
{
int nbEq = 15;
int NP = mesh.getNIDX(pnb);
double b[NP];
double A[nbEq*NP];
double weight[NP];
if (NP < nbEq)
throw mfpmExcept(20);
b[0] = 0.0; // const
b[1] = 0.0; // h
b[2] = 0.0; // k
b[3] = 0.0; // hh
b[4] = 0.0; // kk
b[5] = 0.0; // hk
b[6] = 0.0; // hhh
b[7] = 0.0; // hhk
b[8] = 0.0; // hkk
b[9] = 0.0; // kkk
b[10] = 24.0; // hhhh
b[11] = 24.0; // kkkk
b[12] = 0.0; // hhhk
b[13] = 8.0; // hhkk
b[14] = 0.0; // hkkk
int diagEntry;
int idx, mi;
double h, k;
double sl2 = pow(mesh.getSL(pnb),2);
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = nbEq*i;
h = mesh.x(idx) - mesh.x(pnb);
k = mesh.y(idx) - mesh.y(pnb);
weight[i] = exp(-2.0 * (h*h+k*k)/sl2 );
A[mi+0] = 1.0 * weight[i];
A[mi+1] = h * weight[i];
A[mi+2] = k * weight[i];
A[mi+3] = h*h * weight[i];
A[mi+4] = k*k * weight[i];
A[mi+5] = h*k * weight[i];
double fac=1.0;
A[mi+6] = fac*h*h*h * weight[i];
A[mi+7] = fac*h*h*k * weight[i];
A[mi+8] = fac*h*k*k * weight[i];
A[mi+9] = fac*k*k*k * weight[i];
A[mi+10] = h*h*h*h * weight[i];
A[mi+11] = k*k*k*k * weight[i];
A[mi+12] = h*h*h*k * weight[i];
A[mi+13] = h*h*k*k * weight[i];
A[mi+14] = h*k*k*k * weight[i];
}
int n = nbEq;
int lda = nbEq;
int m = NP;
int jpv[m+n];
int lwork = 3*(m+n);
double work[lwork];
int info;
int one = 1;
int rank;
char TN[] = "N";
dgels_(TN, &n, &m, &one, A, &lda, b, &m, work, &lwork, &info);
if (info!=0)
{
cout << "Error solving least squares: laplaceMatEntry!" << endl;
throw mfpmExcept(27);
}
for (int i=0; i<NP; i++)
{
entries(i) = b[i]*weight[i];
}
// Test operator:
double sum = 0;
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
sum += entries(i)*(pow(mesh.x(idx),4)+pow(mesh.y(idx),4));
}
if ( abs(sum - 48.0) > 1e-7 )
{
cout << pnb << " " << sum << endl;
return -2;
}
return 0;
}
int divLambdaGradMatEntry(const pointSet& mesh, int pnb, double lambda, double DxLambda, double DyLambda, const Array& larr, Array& entries)
{
int NP = mesh.getNIDX(pnb);
double b[NP];
double A[7*NP];
double weight[NP];
if (NP < 7)
throw mfpmExcept(20);
double nx = DxLambda;
double ny = DyLambda;
double nabs = sqrt(nx*nx+ny*ny);
if ( nabs > 1e-5 )
{
nx /= nabs;
ny /= nabs;
}
else
{
nx = 1.0;
ny = 0.0;
}
double tx = -ny;
double ty = nx;
b[0] = -10 / pow(mesh.getSL(pnb),2);
b[1] = 0.0;
b[2] = DxLambda;
b[3] = DyLambda;
b[4] = 2.0*lambda;
b[5] = 2.0*lambda;
b[6] = 0.0;
double alphaL = 3.0;
double alphaR = 10.0;
int diagEntry;
int idx, mi;
double h, k;
double sl2 = pow(mesh.getSL(pnb),2);
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = 7*i;
if (idx!=pnb)
{
h = mesh.x(idx) - mesh.x(pnb);
k = mesh.y(idx) - mesh.y(pnb);
double hN = h*nx + k*ny;
double hT = h*tx + k*ty;
weight[i] = exp(-alphaL*hT*hT/sl2 );
double alpha = alphaL;
// TODO: Only for particular test case!!!!!
if ( lambda < 0.1 )
if ( hN > 0)
alpha = alphaR;
else
alpha = alphaL;
else if (hN > 0)
alpha = alphaL;
else
alpha = alphaR;
weight[i] *= exp(-alpha*hN*hN/sl2 );
A[mi+0] = 0.0;
A[mi+1] = 1.0 * weight[i];
A[mi+2] = h * weight[i];
A[mi+3] = k * weight[i];
A[mi+4] = h*h * weight[i];
A[mi+5] = k*k * weight[i];
A[mi+6] = h*k * weight[i];
}
else
{
diagEntry = i;
weight[i] = 1.0;
A[mi+0] = 1.0;
A[mi+1] = 1.0;
A[mi+2] = 0.0;
A[mi+3] = 0.0;
A[mi+4] = 0.0;
A[mi+5] = 0.0;
A[mi+6] = 0.0;
}
}
int n = 7;
int m = NP;
double work[m+n];
int info, workl = m+n;
int one = 1;
char TN[] = "N";
dgels_(TN, &n, &m, &one, A, &n, b, &m, work, &workl, &info);
if (info!=0)
{
cout << "Error solving least squares: laplaceMatEntry!" << endl;
throw mfpmExcept(27);
}
for (int i=0; i<NP; i++)
{
entries(i) = b[i]*weight[i];
}
// Check for diagonally dominance
double diagEnt = abs(entries(diagEntry));
double sum = 0;
cout << "Entry: " << pnb << endl;
for (int i=0; i<NP; i++)
{
if ( i != diagEntry )
{
sum += abs(entries(i));
cout << entries(i) << " ";
}
else
cout << " * " << entries(i) << " * ";
}
cout << endl;
cout << "Diff: " << diagEnt << " > " << sum << " = " << (sum < diagEnt) << endl;
return 0;
}
int partialLaplaceMatEntry(const pointSet& mesh, int pnb, Array& active, Array& entries)
{
int NP = mesh.getNIDX(pnb);
double b[NP];
double A[7*NP];
double weight[NP];
int arrayEntry[NP];
if (NP < 7)
throw mfpmExcept(20);
b[0] = -10.0 / pow(mesh.getSL(pnb),2);
b[1] = 0.0;
b[2] = 0.0;
b[3] = 0.0;
b[4] = 2.0;
b[5] = 2.0;
b[6] = 0.0;
int diagEntry;
int idx, mi, cnt;
double h, k;
double sl2 = pow(mesh.getSL(pnb),2);
cnt = 0;
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = cnt*7;
if (idx!=pnb)
{
if ( active(i) > 0.5 )
{
h = mesh.x(idx) - mesh.x(pnb);
k = mesh.y(idx) - mesh.y(pnb);
weight[cnt] = exp(-3.0 * (h*h+k*k)/sl2 );
A[mi+0] = 0.0;
A[mi+1] = 1.0 * weight[cnt];
A[mi+2] = h * weight[cnt];
A[mi+3] = k * weight[cnt];
A[mi+4] = h*h * weight[cnt];
A[mi+5] = k*k * weight[cnt];
A[mi+6] = h*k * weight[cnt];
arrayEntry[cnt] = i;
cnt++;
}
}
else
{
diagEntry = i;
weight[cnt] = 1.0;
A[mi+0] = 1.0;
A[mi+1] = 1.0;
A[mi+2] = 0.0;
A[mi+3] = 0.0;
A[mi+4] = 0.0;
A[mi+5] = 0.0;
A[mi+6] = 0.0;
arrayEntry[cnt] = i;
cnt++;
}
}
if (cnt < 7)
throw mfpmExcept(20);
int n = 7;
int m = cnt;
double work[2*(m+n)];
int info, workl = 2*(m+n);
int one = 1;
char TN[] = "N";
dgels_(TN, &n, &m, &one, A, &n, b, &m, work, &workl, &info);
if (info!=0)
{
cout << "Error solving least squares: laplaceMatEntry!" << endl;
throw mfpmExcept(27);
}
for (int i=0; i<cnt; i++)
{
entries(arrayEntry[i]) = b[i]*weight[i];
}
// Test operator:
//~ double sum = 0;
//~ for (int i=0; i<NP; i++)
//~ {
//~ idx = mesh.getIDX(pnb,i);
//~ sum += entries(i)*(mesh.x(idx)*mesh.x(idx)+mesh.y(idx)*mesh.y(idx));
//~ }
//~ if ( abs(sum - 4.0) > 1e-7 )
//~ {
//~ return -2;
//~ }
return 0;
}
int partialApproximationMatEntry(const pointSet& mesh, int pnb, Array& active, Array& entries)
{
int NP = mesh.getNIDX(pnb);
double b[NP];
double A[7*NP];
double weight[NP];
int arrayEntry[NP];
if (NP < 5)
throw mfpmExcept(20);
int orderFac = 6;
b[0] = 1.0;
b[1] = 0.0;
b[2] = 0.0;
if (orderFac > 3)
{
b[3] = 0.0;
b[4] = 0.0;
b[5] = 0.0;
}
int diagEntry;
int idx, mi, cnt;
double h, k;
double sl2 = pow(mesh.getSL(pnb),2);
cnt = 0;
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = cnt*orderFac;
if ( active(i) > 0.5 )
{
h = mesh.x(idx) - mesh.x(pnb);
k = mesh.y(idx) - mesh.y(pnb);
weight[cnt] = exp(-3.0 * (h*h+k*k)/sl2 );
A[mi+0] = 1.0 * weight[cnt];
A[mi+1] = h * weight[cnt];
A[mi+2] = k * weight[cnt];
if (orderFac>3)
{
A[mi+3] = h*h * weight[cnt];
A[mi+4] = h*k * weight[cnt];
A[mi+5] = k*k * weight[cnt];
}
arrayEntry[cnt] = i;
cnt++;
}
}
if (cnt < 4)
throw mfpmExcept(20);
int n = orderFac;
int m = cnt;
double work[2*(m+n)];
int info, workl = 2*(m+n);
int one = 1;
char TN[] = "N";
dgels_(TN, &n, &m, &one, A, &n, b, &m, work, &workl, &info);
if (info!=0)
{
cout << "Error solving least squares: laplaceMatEntry!" << endl;
throw mfpmExcept(27);
}
for (int i=0; i<cnt; i++)
{
entries(arrayEntry[i]) = b[i]*weight[i];
}
return 0;
}
double bgGridIntegration(const pointSet& mesh, const scalarField& data)
{
//cout << "Integrating over domain" << endl;
// Get bounding box
double xmin, ymin, xmax, ymax;
mesh.getBoundingBox(xmin, xmax, ymin, ymax);
// Get smoothing length
double sl = mesh.getMinSL();
double h = 0.15*sl;
// Calc dimensions
int nx = (int) ((xmax-xmin)/h)+2;
int ny = (int) ((ymax-ymin)/h)+2;
// Build background grid
#ifndef USE_STACK
vector<point> P;
P.reserve(nx*ny);
#else
point P[nx*ny];
#endif
double val;
for (int i=0; i<nx; i++)
{
for (int j=0; j<ny; j++)
{
#ifndef USE_STACK
point pTmp;
pTmp.X = xmin + i*h;
pTmp.Y = ymin + j*h;
P.push_back(pTmp);
#else
P[i*ny+j].X = xmin + i*h;
P[i*ny+j].Y = ymin + j*h;
#endif
}
}
// Interpolate scalarField values onto bg grid
int n = nx*ny;
int ix, iy;
double sum = 0;
for (int i=0; i<n; i++)
{
mesh.getQuad(P[i], ix, iy);
const vector<int>& bndquad = mesh.getQuad(ix, iy, false);
int bqSize = bndquad.size();
// Point definitely in / out domain?
if (bqSize == 0)
{
const vector<int>& quad = mesh.getQuad(ix, iy);
if (quad.size() != 0)
{
sum += data.interpolateLS(P[i]);
}
}
// No? Check in/out with normals
else
{
// Find nearest bnd point
double minDist = 1e100;
int minPos = -1;
for (int j=0; j<bqSize; j++)
{
if (minDist > mesh.P(bndquad[j]).dist(P[i]))
{
minDist = mesh.P(bndquad[j]).dist(P[i]);
minPos = bndquad[j];
}
}
double vecX = P[i].X - mesh.P(minPos).X;
double vecY = P[i].Y - mesh.P(minPos).Y;
double nDir = mesh.P(minPos).Nx*vecX + mesh.P(minPos).Ny*vecY;
if (nDir <= 0)
{
sum += data.interpolateLS(P[i]);
}
}
}
sum *= h*h;
return sum;
}
int partialGradMatEntry(const pointSet& mesh, int pnb, const Array& active, Array& gradX, Array& gradY, int order)
{
int orderFac;
int NP = mesh.getNIDX(pnb);
int cntNP = 0;
for (int i=0; i<NP; i++)
{
if (active(i)>0.5)
cntNP++;
}
if (order==1 & cntNP>=4)
orderFac = 4;
else if (order==2 & cntNP>=7)
orderFac = 7;
else if (order==3 & cntNP>=11)
orderFac = 11;
else if (order==4 & cntNP>=16)
orderFac = 16;
else
throw mfpmExcept(20);
double b[2*NP];
double A[16*NP];
double weight[NP];
int entryArray[NP];
if (NP < 4)
throw mfpmExcept(20);
double sl = mesh.getSL(pnb);
double sl2 = pow(sl,2);
double alpha = sl;
int diagEntry;
int idx, mi, cnt;
double h, k;
cnt = 0;
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = orderFac*cnt;
if (idx!=pnb)
{
if (active(i) > 0.5)
{
h = mesh.x(idx) - mesh.x(pnb);
k = mesh.y(idx) - mesh.y(pnb);
weight[cnt] = exp(-2.0 * (h*h+k*k)/sl2 );
h /= alpha;
k /= alpha;
A[mi+0] = 0.0;
A[mi+1] = 1.0 * weight[cnt];
A[mi+2] = h * weight[cnt];
A[mi+3] = k * weight[cnt];
if (orderFac>4)
{
A[mi+4] = h*h * weight[cnt];
A[mi+5] = k*k * weight[cnt];
A[mi+6] = h*k * weight[cnt];
}
entryArray[cnt] = i;
cnt++;
}
}
else
{
diagEntry = i;
weight[i] = 1.0;
A[mi+0] = 1.0;
A[mi+1] = 1.0;
for (int j=2; j<orderFac; j++)
A[mi+j] = 0.0;
entryArray[cnt] = i;
cnt++;
}
}
// GradX
b[0] = 0.0;
b[1] = 0.0;
b[2] = 1.0 / alpha;
for (int i=3; i<orderFac; i++)
b[i] = 0.0;
// GradY
b[cnt+0] = 0.0;
b[cnt+1] = 0.0;
b[cnt+2] = 0.0;
b[cnt+3] = 1.0 / alpha;
for (int i=4; i<orderFac; i++)
b[cnt+i] = 0.0;
int n = orderFac;
int m = cnt;
int workl = 3*(m+n);
double work[workl];
int info;
int nrhs = 2;
char TN[] = "N";
dgels_(TN, &n, &m, &nrhs, A, &n, b, &m, work, &workl, &info);
cout << "NP: " << cnt << endl;
if (info!=0)
{
cout << "Error solving least squares: partialGradMatEntry!" << endl;
throw mfpmExcept(27);
}
gradX = 0;
gradY = 0;
for (int i=0; i<cnt; i++)
{
gradX(entryArray[i]) = b[i]*weight[i];
gradY(entryArray[i]) = b[cnt+i]*weight[i];
}
return 0;
}
void writePointSet
(
const bool binary,
const vtkMesh& vMesh,
const pointSet& set,
const fileName& fileName
)
{
std::ofstream pStream(fileName.c_str());
pStream
<< "# vtk DataFile Version 2.0" << std::endl
<< set.name() << std::endl;
if (binary)
{
pStream << "BINARY" << std::endl;
}
else
{
pStream << "ASCII" << std::endl;
}
pStream << "DATASET POLYDATA" << std::endl;
//------------------------------------------------------------------
//
// Write topology
//
//------------------------------------------------------------------
// Write points
pStream << "POINTS " << set.size() << " float" << std::endl;
DynamicList<floatScalar> ptField(3*set.size());
writeFuns::insert
(
UIndirectList<point>(vMesh.mesh().points(), set.toc())(),
ptField
);
writeFuns::write(pStream, binary, ptField);
//-----------------------------------------------------------------
//
// Write data
//
//-----------------------------------------------------------------
// Write faceID
pStream
<< "POINT_DATA " << set.size() << std::endl
<< "FIELD attributes 1" << std::endl;
// Cell ids first
pStream << "pointID 1 " << set.size() << " int" << std::endl;
labelList pointIDs(set.toc());
writeFuns::write(pStream, binary, pointIDs);
}
int approximationXYMatEntry(const pointSet& mesh, int pnb, double xp, double yp, Array& entries, int order)
{
int orderFac = 3;
int NP = mesh.getNIDX(pnb);
double b[NP];
double A[7*NP];
double weight[NP];
int arrayEntry[NP];
if (order == 1)
orderFac = 3;
else
orderFac = 6;
if (NP < orderFac)
throw mfpmExcept(20);
b[0] = 1.0;
b[1] = 0.0;
b[2] = 0.0;
b[3] = 0.0;
b[4] = 0.0;
b[5] = 0.0;
int diagEntry;
int idx, mi;
double h, k;
double sl2 = pow(mesh.getSL(pnb),2);
// Store matrix in Fortran format
for (int i=0; i<NP; i++)
{
idx = mesh.getIDX(pnb,i);
mi = i*orderFac;
h = mesh.x(idx) - xp;
k = mesh.y(idx) - yp;
weight[i] = exp(-3.0 * (h*h+k*k)/sl2 );
A[mi+0] = 1.0 * weight[i];
A[mi+1] = h * weight[i];
A[mi+2] = k * weight[i];
if (orderFac > 3)
{
A[mi+3] = h*h * weight[i];
A[mi+4] = k*k * weight[i];
A[mi+5] = h*k * weight[i];
}
}
int n = orderFac;
int m = NP;
double work[2*(m+n)];
int info, workl = 2*(m+n);
int one = 1;
char TN[] = "N";
dgels_(TN, &n, &m, &one, A, &n, b, &m, work, &workl, &info);
if (info!=0)
{
cout << "Error solving least squares: laplaceMatEntry!" << endl;
throw mfpmExcept(27);
}
for (int i=0; i<NP; i++)
{
entries(i) = b[i]*weight[i];
}
return 0;
}
