void operator()(boost::ptr_vector<Variable>& target, Tag tag) {
target.push_back( new ValueVariable<Tag>() );
if (localization::MetaInfo<Tag>::has_range) {
target.push_back( new MinVariable<Tag>() );
target.push_back( new MaxVariable<Tag>() );
}
}
const Value MessageSelectorEnv::specialValue(const string& id) const
{
Value v;
// TODO: Just use a simple if chain for now - improve this later
if ( id=="delivery_mode" ) {
v = msg.getEncoding().isPersistent() ? PERSISTENT : NON_PERSISTENT;
} else if ( id=="redelivered" ) {
v = msg.getDeliveryCount()>0 ? true : false;
} else if ( id=="priority" ) {
v = int64_t(msg.getPriority());
} else if ( id=="correlation_id" ) {
MessageId cId = msg.getEncoding().getCorrelationId();
if (cId) {
returnedStrings.push_back(new string(cId.str()));
v = returnedStrings[returnedStrings.size()-1];
}
} else if ( id=="message_id" ) {
MessageId mId = msg.getEncoding().getMessageId();
if (mId) {
returnedStrings.push_back(new string(mId.str()));
v = returnedStrings[returnedStrings.size()-1];
}
} else if ( id=="to" ) {
v = EMPTY; // Hard to get this correct for both 1.0 and 0-10
} else if ( id=="reply_to" ) {
v = EMPTY; // Hard to get this correct for both 1.0 and 0-10
} else if ( id=="absolute_expiry_time" ) {
qpid::sys::AbsTime expiry = msg.getExpiration();
// Java property has value of 0 for no expiry
v = (expiry==qpid::sys::FAR_FUTURE) ? 0
: qpid::sys::Duration(qpid::sys::AbsTime::Epoch(), expiry) / qpid::sys::TIME_MSEC;
} else if ( id=="creation_time" ) {
// Use the time put on queue (if it is enabled) as 0-10 has no standard way to get message
// creation time and we're not paying attention to the 1.0 creation time yet.
v = int64_t(msg.getTimestamp() * 1000); // getTimestamp() returns time in seconds we need milliseconds
} else if ( id=="jms_type" ) {
// Currently we can't distinguish between an empty JMSType and no JMSType
// We'll assume for now that setting an empty JMSType doesn't make a lot of sense
const string jmsType = msg.getAnnotation("jms-type").asString();
if ( !jmsType.empty() ) {
returnedStrings.push_back(new string(jmsType));
v = returnedStrings[returnedStrings.size()-1];
}
} else {
v = Value();
}
return v;
}
void Projector::compute_projections(boost::ptr_vector<Projection>& projections,
int image_size) const {
// get coordinates
IMP::algebra::Vector3Ds points(particles_.size());
for (unsigned int i = 0; i < particles_.size(); i++) {
points[i] = core::XYZ(particles_[i]).get_coordinates();
}
int axis_size = estimate_image_size(points);
if (axis_size <= image_size) axis_size = image_size;
// storage for rotated points
IMP::algebra::Vector3Ds rotated_points(points.size());
IMP::algebra::Rotation3Ds rotations;
IMP::algebra::Vector3Ds axes;
projection_sphere_.get_all_rotations_and_axes(rotations, axes);
for (unsigned int i = 0; i<rotations.size(); i++) {
// rotate points
for (unsigned int point_index = 0; point_index < points.size();
point_index++) {
rotated_points[point_index] = rotations[i] * points[point_index];
}
// project
IMP_UNIQUE_PTR<Projection> p(new Projection(rotated_points, mass_,
pixel_size_, resolution_,
axis_size));
p->set_rotation(rotations[i]);
p->set_axis(axes[i]);
p->set_id(i);
projections.push_back(p.release());
}
}
Layout(float s0_snr,float mean_dif_,unsigned char odf_fold = 8,float discrete_scale_ = 0.5,float spin_density_ = 2000.0)
:mean_dif(mean_dif_),discrete_scale(discrete_scale_),spin_density(spin_density_)
{
ti.init(odf_fold);
for (unsigned int index = 0; index * discrete_scale <= spin_density+1.0; ++index)
rician_gen.push_back(new RacianNoise((float)index * discrete_scale,spin_density/s0_snr));
}
void AotGraphan::analyzeString( const std::string & str, boost::ptr_vector<Unit> & units ) {
setupRml();
try {
CGraphmatFile file;
if( !file.LoadDicts() ) { // Загружаем словари
throw std::logic_error( file.GetLastError() );
}
if( !file.LoadStringToGraphan( str ) ) { // Загружаем файл
throw std::logic_error( file.GetLastError() );
}
for( const CGraLine & line : file.GetUnits() ) {
units.push_back( new Unit( line.GetToken(), line.GetTokenLength(), line.GetInputOffset(), line.IsWordOrNumberOrAbbr() ? Unit::WORD : line.IsPunct() ? Unit::PUNCT : Unit::UNKNOWN ) );
}
} catch ( const std::exception & e ) {
throw e;
} catch ( const CExpc & e ) {
throw std::logic_error( "Couldn't init morphology: " + e.m_strCause );
} catch (...) {
throw std::logic_error( "Couldn't init morphology due to unknown error" );
}
}
/**
* Function FindRescues
* Grab all possible RESCUE_CACHE_CANDIDATEs into a vector.
* @param aRescuer - the working RESCUER instance.
* @param aCandidates - the vector the will hold the candidates.
*/
static void FindRescues( RESCUER& aRescuer, boost::ptr_vector<RESCUE_CANDIDATE>& aCandidates )
{
typedef std::map<wxString, RESCUE_CACHE_CANDIDATE> candidate_map_t;
candidate_map_t candidate_map;
wxString part_name_suffix = aRescuer.GetPartNameSuffix();
for( SCH_COMPONENT* each_component : *( aRescuer.GetComponents() ) )
{
wxString part_name( each_component->GetPartName() );
LIB_PART* cache_match = find_component( part_name, aRescuer.GetLibs(), /* aCached */ true );
LIB_PART* lib_match = aRescuer.GetLibs()->FindLibPart( part_name );
// Test whether there is a conflict
if( !cache_match || !lib_match )
continue;
if( !cache_match->PinsConflictWith( *lib_match, /* aTestNums */ true,
/* aTestNames */ true, /* aTestType */ true, /* aTestOrientation */ true,
/* aTestLength */ false ))
continue;
RESCUE_CACHE_CANDIDATE candidate(
part_name, part_name + part_name_suffix,
cache_match, lib_match );
candidate_map[part_name] = candidate;
}
// Now, dump the map into aCandidates
for( const candidate_map_t::value_type& each_pair : candidate_map )
{
aCandidates.push_back( new RESCUE_CACHE_CANDIDATE( each_pair.second ) );
}
}
/**
* Function FindRescues
* Grab all possible RESCUE_CASE_CANDIDATES into a vector.
* @param aRescuer - the working RESCUER instance.
* @param aCandidates - the vector the will hold the candidates.
*/
static void FindRescues( RESCUER& aRescuer, boost::ptr_vector<RESCUE_CANDIDATE>& aCandidates )
{
typedef std::map<wxString, RESCUE_CASE_CANDIDATE> candidate_map_t;
candidate_map_t candidate_map;
for( SCH_COMPONENT* each_component : *( aRescuer.GetComponents() ) )
{
wxString part_name( each_component->GetPartName() );
LIB_ALIAS* case_sensitive_match = aRescuer.GetLibs()->FindLibraryAlias( part_name );
std::vector<LIB_ALIAS*> case_insensitive_matches;
aRescuer.GetLibs()->FindLibraryNearEntries( case_insensitive_matches, part_name );
if( case_sensitive_match || !( case_insensitive_matches.size() ) )
continue;
RESCUE_CASE_CANDIDATE candidate(
part_name, case_insensitive_matches[0]->GetName(),
case_insensitive_matches[0]->GetPart() );
candidate_map[part_name] = candidate;
}
// Now, dump the map into aCandidates
for( const candidate_map_t::value_type& each_pair : candidate_map )
{
aCandidates.push_back( new RESCUE_CASE_CANDIDATE( each_pair.second ) );
}
}
void read_polygon_xyz(boost::ptr_vector<geometry_type> & paths)
{
int num_rings = read_integer();
if (num_rings > 0)
{
std::unique_ptr<geometry_type> poly(new geometry_type(geometry_type::types::Polygon));
for (int i = 0; i < num_rings; ++i)
{
int num_points = read_integer();
if (num_points > 0)
{
CoordinateArray ar(num_points);
read_coords_xyz(ar);
poly->move_to(ar[0].x, ar[0].y);
for (int j = 1; j < num_points; ++j)
{
poly->line_to(ar[j].x, ar[j].y);
}
poly->close_path();
}
}
if (poly->size() > 2) // ignore if polygon has less than 3 vertices
paths.push_back(poly.release());
}
}
void AddNormalizationRestrictionImpl::operator()( boost::ptr_vector<Restriction> & restrictions ) const {
AgreementRestriction *agrRestr = new AgreementRestriction();
agrRestr->addArgument(new AttributeExpression(new CurrentAnnotationExpression(), lspl::text::attributes::AttributeKey::BASE));
agrRestr->addArgument(new ConstantExpression("1"));
Restriction * restriction = agrRestr;
restrictions.push_back( restriction );
}
static void grid2utf(T const& grid_type,
boost::ptr_vector<uint16_t> & lines,
std::vector<typename T::lookup_type>& key_order,
unsigned int resolution)
{
typedef std::map< typename T::lookup_type, typename T::value_type> keys_type;
typedef typename keys_type::const_iterator keys_iterator;
typename T::feature_key_type const& feature_keys = grid_type.get_feature_keys();
typename T::feature_key_type::const_iterator feature_pos;
keys_type keys;
// start counting at utf8 codepoint 32, aka space character
uint16_t codepoint = 32;
unsigned array_size = std::ceil(grid_type.width()/static_cast<float>(resolution));
for (unsigned y = 0; y < grid_type.height(); y=y+resolution)
{
uint16_t idx = 0;
uint16_t* line = new uint16_t[array_size];
typename T::value_type const* row = grid_type.getRow(y);
for (unsigned x = 0; x < grid_type.width(); x=x+resolution)
{
// todo - this lookup is expensive
typename T::value_type feature_id = row[x];
feature_pos = feature_keys.find(feature_id);
if (feature_pos != feature_keys.end())
{
typename T::lookup_type const& val = feature_pos->second;
keys_iterator key_pos = keys.find(val);
if (key_pos == keys.end())
{
// Create a new entry for this key. Skip the codepoints that
// can't be encoded directly in JSON.
if (codepoint == 34) ++codepoint; // Skip "
else if (codepoint == 92) ++codepoint; // Skip backslash
if (feature_id == mapnik::grid::base_mask)
{
keys[""] = codepoint;
key_order.push_back("");
}
else
{
keys[val] = codepoint;
key_order.push_back(val);
}
line[idx++] = static_cast<uint16_t>(codepoint);
++codepoint;
}
else
{
line[idx++] = static_cast<uint16_t>(key_pos->second);
}
}
// else, shouldn't get here...
}
lines.push_back(line);
}
}
void AddWordMatcherImpl::operator()( boost::ptr_vector<Matcher> & matchers, const std::string & base, SpeechPart speechPart, uint index, boost::ptr_vector< Restriction > & restrictions ) const {
Matcher * matcher = new WordMatcher( base, speechPart );
matcher->variable = Variable( speechPart, index );
matcher->addRestrictions( restrictions );
matchers.push_back( matcher );
}
void read_point(boost::ptr_vector<geometry_type> & paths)
{
double x = read_double();
double y = read_double();
std::unique_ptr<geometry_type> pt(new geometry_type(geometry_type::types::Point));
pt->move_to(x, y);
paths.push_back(pt.release());
}
void read_point(boost::ptr_vector<geometry_type> & paths)
{
geometry_type* pt = new geometry_type(Point);
double x = read_double();
double y = read_double();
pt->move_to(x, y);
paths.push_back(pt);
}
void set(const string& id, const qb::Value& value) {
if (value.type==qb::Value::T_STRING) {
strings.push_back(new string(*value.s));
values[id] = strings[strings.size()-1];
} else {
values[id] = value;
}
}
void MultiDispatch::parseParameters(
const std::vector<std::string>& input,
boost::ptr_vector<ExpressionPiece>& output) {
for (vector<string>::const_iterator it = input.begin(); it != input.end();
++it) {
const char* src = it->c_str();
output.push_back(get_complex_param(src));
}
}
void AddAlternativeDefinitionImpl::operator()( boost::ptr_vector<Alternative> & alts, boost::ptr_vector<Matcher> & matchers, boost::ptr_map<AttributeKey,Expression> & bindings, const std::string & source, const std::string & transformSource ) const {
Alternative * alternative = new Alternative( source, transformSource ); // Добавляем новую альтернативу к шаблону
alternative->addMatchers( matchers ); // Добавляем сопоставители
alternative->addBindings( bindings ); // Добавляем связывания
alternative->updateDependencies(); // Обновляем зависимости альтернативы
alts.push_back( alternative );
}
void AddPatternMatcherImpl::operator()( boost::ptr_vector<Matcher> & matchers, const std::string & name, uint index, boost::ptr_vector< Restriction > & restrictions ) const {
PatternRef pattern = getPattern( name );
PatternMatcher * matcher = new PatternMatcher( *pattern );
matcher->variable = Variable( *pattern, index );
matcher->addRestrictions( restrictions );
matchers.push_back( matcher );
}
void read_linestring_xyz(boost::ptr_vector<geometry_type> & paths)
{
geometry_type* line = new geometry_type(LineString);
int num_points = read_integer();
CoordinateArray ar(num_points);
read_coords_xyz(ar);
line->move_to(ar[0].x, ar[0].y);
for (int i = 1; i < num_points; ++i)
{
line->line_to(ar[i].x, ar[i].y);
}
paths.push_back(line);
}
void AddLoopMatcherImpl::operator()( boost::ptr_vector<Matcher> & matchers, uint min, uint max, std::vector<uint> & alternativesCount ) const {
LoopMatcher * matcher = new LoopMatcher( min, max );
for ( int i = alternativesCount.size() - 1; i >= 0 ; -- i ) { // Важно!! Здесь перебираем в обратном порядке!
MatcherContainer * matcherGroup = new MatcherContainer(); // Создаем контейнер для альтернативы
matcherGroup->addMatchers( matchers.end() - alternativesCount[ i ], matchers.end(), matchers );
matcher->addAlternative( matcherGroup );
}
matchers.push_back( matcher );
}
void Parser::parseFile ( ProgramOptions &options, boost::ptr_vector<File> &fileList ) {
std::string output = options.getFileName();
std::ifstream stream ( output, std::ios::in );
std::string line, path, name;
std::uintmax_t file_size;
if ( stream.is_open() ) {
while ( stream.good() ) {
std::getline ( stream, line );
std::stringstream lineStream ( line );
lineStream >> file_size >> path >> name;
File *newFile = new File ( file_size, path, name );
fileList.push_back ( newFile );
}
} else
void read_linestring_xyz(boost::ptr_vector<geometry_type> & paths)
{
int num_points = read_integer();
if (num_points > 0)
{
CoordinateArray ar(num_points);
read_coords_xyz(ar);
std::unique_ptr<geometry_type> line(new geometry_type(geometry_type::types::LineString));
line->move_to(ar[0].x, ar[0].y);
for (int i = 1; i < num_points; ++i)
{
line->line_to(ar[i].x, ar[i].y);
}
paths.push_back(line.release());
}
}
inline std::vector<std::string> command::columns()
{
using namespace std;
using namespace brig::unicode;
vector<string> cols;
if (0 == m_hnd.stmt) return cols;
m_cols.clear();
ub4 count(0);
m_hnd.check(lib::singleton().p_OCIAttrGet(m_hnd.stmt, OCI_HTYPE_STMT, &count, 0, OCI_ATTR_PARAM_COUNT, m_hnd.err));
for (ub4 i(0); i < count; ++i)
{
OCIParam *dsc(0);
m_hnd.check(lib::singleton().p_OCIParamGet(m_hnd.stmt, OCI_HTYPE_STMT, m_hnd.err, (void**)&dsc, i + 1));
try
{
ub2 data_type(0), size(0);
sb2 precision(0);
sb1 scale(-1);
ub1 charset_form(SQLCS_NCHAR);
utext *name(0), *nty_schema(0), *nty(0);
ub4 name_len(0), nty_schema_len(0), nty_len(0);
m_hnd.check(lib::singleton().p_OCIAttrGet(dsc, OCI_DTYPE_PARAM, &name, &name_len, OCI_ATTR_NAME, m_hnd.err));
m_hnd.check(lib::singleton().p_OCIAttrGet(dsc, OCI_DTYPE_PARAM, &data_type, 0, OCI_ATTR_DATA_TYPE, m_hnd.err));
m_hnd.check(lib::singleton().p_OCIAttrGet(dsc, OCI_DTYPE_PARAM, &size, 0, OCI_ATTR_DATA_SIZE, m_hnd.err));
m_hnd.check(lib::singleton().p_OCIAttrGet(dsc, OCI_DTYPE_PARAM, &precision, 0, OCI_ATTR_PRECISION, m_hnd.err));
m_hnd.check(lib::singleton().p_OCIAttrGet(dsc, OCI_DTYPE_PARAM, &scale, 0, OCI_ATTR_SCALE, m_hnd.err));
m_hnd.check(lib::singleton().p_OCIAttrGet(dsc, OCI_DTYPE_PARAM, &charset_form, 0, OCI_ATTR_CHARSET_FORM, m_hnd.err));
m_hnd.check(lib::singleton().p_OCIAttrGet(dsc, OCI_DTYPE_PARAM, &nty_schema, &nty_schema_len, OCI_ATTR_SCHEMA_NAME, m_hnd.err));
m_hnd.check(lib::singleton().p_OCIAttrGet(dsc, OCI_DTYPE_PARAM, &nty, &nty_len, OCI_ATTR_TYPE_NAME, m_hnd.err));
identifier nty_lcase = { transform<char>(nty_schema, lower_case), transform<char>(nty, lower_case), "" };
m_cols.push_back(define_factory(&m_hnd, i + 1, data_type, size, precision, scale, charset_form, nty_lcase));
cols.push_back(transform<char>(name));
}
catch (const exception&) { handles::free_descriptor((void**)&dsc, OCI_DTYPE_PARAM); throw; }
handles::free_descriptor((void**)&dsc, OCI_DTYPE_PARAM);
}
ub4 rows = ub4(PageSize);
m_hnd.check(lib::singleton().p_OCIAttrSet(m_hnd.stmt, OCI_HTYPE_STMT, &rows, 0, OCI_ATTR_PREFETCH_ROWS, m_hnd.err));
return cols;
}
void GetAll(boost::ptr_vector<acl::Group>& groups)
{
groups.clear();
QueryResults results;
mongo::Query query;
boost::unique_future<bool> future;
TaskPtr task(new db::Select("groups", query, results, future));
Pool::Queue(task);
future.wait();
if (results.size() == 0) return;
for (auto& obj: results)
groups.push_back(bson::Group::Unserialize(obj));
}
SharedIO(const std::string &type1, const std::string &type2,
const std::string &type3_1, const std::string &type3_2,
const std::string &type4_1, const std::string &type4_2,
const CharString &input1, const CharString &input2)
: n(0), type1_n(0), type2_n(0), type3_n(0), type4_n(0),
Stream_1(type1.c_str(), SequenceStream::WRITE),
Stream_2(type2.c_str(), SequenceStream::WRITE),
Stream_3_1(type3_1.c_str(), SequenceStream::WRITE),
Stream_3_2(type3_2.c_str(), SequenceStream::WRITE),
Stream_4_1(type4_1.c_str(), SequenceStream::WRITE),
Stream_4_2(type4_2.c_str(), SequenceStream::WRITE),
seqStream1(toCString(input1)),
seqStream2(toCString(input2)),
mutTypes(4) {
for (int i = 0; i < 4; i++) {
mutTypes.push_back(new boost::mutex());
}
}
inline std::vector<std::string> command::columns()
{
std::vector<std::string> cols;
if (lib::error(m_req)) return cols;
m_cols.clear();
T_CCI_SQLX_CMD cmd_type;
int col_count(0);
T_CCI_COL_INFO* col_info(lib::singleton().p_cci_get_result_info(m_req, &cmd_type, &col_count));
if (!col_info) throw std::runtime_error("CUBRID error");
for (int i(1); i <= col_count; ++i)
{
m_cols.push_back(get_data_factory(CCI_GET_RESULT_INFO_TYPE(col_info, i)));
cols.push_back(CCI_GET_RESULT_INFO_NAME(col_info, i));
}
return cols;
}
void read_polygon_xyz(boost::ptr_vector<geometry_type> & paths)
{
geometry_type* poly = new geometry_type(Polygon);
int num_rings = read_integer();
unsigned capacity = 0;
for (int i = 0; i < num_rings; ++i)
{
int num_points = read_integer();
capacity += num_points;
CoordinateArray ar(num_points);
read_coords_xyz(ar);
poly->move_to(ar[0].x, ar[0].y);
for (int j = 1; j < num_points; ++j)
{
poly->line_to(ar[j].x, ar[j].y);
}
}
paths.push_back(poly);
}
void AotMorphology::appendWordForms( const std::string & token, boost::ptr_vector<WordForm> & forms ) {
std::string tokenCopy = token;
std::vector<CFormInfo> aotForms;
lemmatizer->CreateParadigmCollection(false, tokenCopy, is_russian_upper( (BYTE)token[0] ), true, aotForms);
for ( uint i = 0; i < aotForms.size(); ++ i) {
const CFormInfo & f = aotForms[i];
std::string srcAncode = f.GetSrcAncode();
const char * gramCodes = srcAncode.c_str();
uint attributeSetCount = srcAncode.length() / 2;
uint64 * attributeSets = new uint64[ attributeSetCount ];
for ( uint i = 0; i < attributeSetCount; ++i )
attributeSets[i] = getAttributes( gramCodes + 2*i );
forms.push_back( new WordForm( getSpeechPart( gramCodes ), f.GetWordForm( 0 ), getStem( f ), attributeSets, attributeSetCount ) );
}
}
inline std::vector<std::string> command::columns()
{
std::vector<std::string> cols;
if (!m_stmt) return cols;
m_binds.clear();
m_cols.clear();
MYSQL_RES* res(lib::singleton().p_mysql_stmt_result_metadata(m_stmt));
check(res != 0);
const unsigned int count(lib::singleton().p_mysql_num_fields(res));
m_binds.resize(count);
memset(m_binds.data(), 0, m_binds.size() * sizeof(MYSQL_BIND));
for (unsigned int i(0); i < count; ++i)
{
MYSQL_FIELD* field(lib::singleton().p_mysql_fetch_field_direct(res, i));
m_cols.push_back(bind_result_factory(field, m_binds[i]));
cols.push_back(field->name);
}
lib::singleton().p_mysql_free_result(res);
check(lib::singleton().p_mysql_stmt_bind_result(m_stmt, m_binds.data()) == 0);
return cols;
}
bool load_dicom_multi_frame(const char* file_name,boost::ptr_vector<DwiHeader>& dwi_files)
{
image::io::dicom dicom_header;// multiple frame image
if(!dicom_header.load_from_file(file_name))
return false;
{
// Philips multiframe
unsigned int slice_num = dicom_header.get_int(0x2001,0x102D);
if(!slice_num)
slice_num = 1;
image::basic_image<unsigned short,3> buf_image;
dicom_header >> buf_image;
unsigned short num_gradient = buf_image.depth()/slice_num;
unsigned int plane_size = buf_image.width()*buf_image.height();
for(unsigned int index = 0;check_prog(index,num_gradient);++index)
{
std::auto_ptr<DwiHeader> new_file(new DwiHeader);
if(index == 0)
get_report_from_dicom(dicom_header,new_file->report);
new_file->image.resize(image::geometry<3>(buf_image.width(),buf_image.height(),slice_num));
for(unsigned int j = 0;j < slice_num;++j)
std::copy(buf_image.begin()+(j*num_gradient + index)*plane_size,
buf_image.begin()+(j*num_gradient + index+1)*plane_size,
new_file->image.begin()+j*plane_size);
// Philips use neurology convention. Now changes it to radiology
image::flip_x(new_file->image);
new_file->file_name = file_name;
std::ostringstream out;
out << index;
new_file->file_name += out.str();
dicom_header.get_voxel_size(new_file->voxel_size);
dwi_files.push_back(new_file.release());
}
}
return true;
}
void set(const string& id, const char* value) {
strings.push_back(new string(value));
values[id] = strings[strings.size()-1];
}
