Example #1
0
 std::vector<size_t> get_array_lengths(int R, h5::group g, std::string const& name, bool is_complex) {
  h5::dataset ds = g.open_dataset(name);
  h5::dataspace d_space = H5Dget_space(ds);
  int Rank = R + (is_complex ? 1 : 0);
  int rank = H5Sget_simple_extent_ndims(d_space);
  if (rank != Rank)
   TRIQS_RUNTIME_ERROR << "triqs::array::h5::read. Rank mismatch : the array has rank = " << Rank
                       << " while the array stored in the hdf5 file has rank = " << rank;
  std::vector<size_t> d2(R);
  hsize_t dims_out[rank];
  H5Sget_simple_extent_dims(d_space, dims_out, NULL);
  for (int u = 0; u < R; ++u) d2[u] = dims_out[u];
  return d2;
 }
 std::c14::enable_if_t<is_amv_value_or_view_class<ArrayType>::value && !has_scalar_or_string_value_type<ArrayType>::value>
 h5_write(h5::group gr, std::string name, ArrayType const& a) {
  if (a.is_empty()) TRIQS_RUNTIME_ERROR << " Cannot save an empty array into hdf5";
  auto gr2 = gr.create_group(name);
  gr2.write_triqs_hdf5_data_scheme(a);
  // save the shape
  array<int, 1> sha(ArrayType::rank);
  for (int u = 0; u < ArrayType::rank; ++u) sha(u) = a.shape()[u];
  h5_write(gr2, "shape", sha);
#ifndef __cpp_generic_lambdas
  foreach(a, h5_impl::_save_lambda<ArrayType>{a, gr2});
#else
  foreach(a, [&](auto... is) { h5_write(gr2, h5_impl::_h5_name(is...), a(is...)); });
#endif
 }
 std::c14::enable_if_t<is_amv_value_or_view_class<ArrayType>::value && !has_scalar_or_string_value_type<ArrayType>::value>
 h5_read(h5::group gr, std::string name, ArrayType& a) {
  static_assert(!std::is_const<ArrayType>::value, "Cannot read in const object");
  auto gr2 = gr.open_group(name);
  // TODO checking scheme...
  // load the shape
  auto sha2 = a.shape();
  array<int, 1> sha;
  h5_read(gr2, "shape", sha);
  if (first_dim(sha) != sha2.size())
   TRIQS_RUNTIME_ERROR << " array<array<...>> load : rank mismatch. Expected " << sha2.size()<< " Got " << first_dim(sha);
  for (int u = 0; u < sha2.size(); ++u) sha2[u] = sha(u);
  if (a.shape() != sha2) a.resize(sha2);
#ifndef __cpp_generic_lambdas
  foreach(a, h5_impl::_load_lambda<ArrayType>{a, gr2});
#else
  foreach(a, [&](auto... is) { h5_read(gr2, h5_impl::_h5_name(is...), a(is...)); });
#endif
 }
Example #4
0
 /// Write into HDF5
 friend void h5_write(h5::group fg, std::string subgroup_name, gf_mesh const& m) {
  h5::group gr = fg.create_group(subgroup_name);
  h5_write(gr, "dims", m.dims.to_vector());
 }
Example #5
0
      /**
   @param fg Parent HDF5 group to write the space to
   @param name Name of the HDF5 subgroup to be created
   @param hs Hilbert subspace to be written
 */
      friend void h5_write(h5::group fg, std::string const &name, sub_hilbert_space const &hs) {
        auto gr = fg.create_group(name);
        h5_write(gr, "index", hs.index);
        h5_write(gr, "fock_states", hs.fock_states);
      }
Example #6
0
      /**
   @param fg Parent HDF5 group to read the space from
   @param name Name of the HDF5 subgroup to be read
   @param hs Reference to a target Hilbert space object
 */
      friend void h5_read(h5::group fg, std::string const &name, hilbert_space &hs) {
        auto gr = fg.open_group(name);
        h5_read(gr, "dim", hs.dim);
      }
Example #7
0
      /**
   @param fg Parent HDF5 group to write the space to
   @param name Name of the HDF5 subgroup to be created
   @param hs Hilbert space to be written
 */
      friend void h5_write(h5::group fg, std::string const &name, hilbert_space const &hs) {
        auto gr = fg.create_group(name);
        h5_write(gr, "dim", hs.dim);
      }
Example #8
0
 /// Read from HDF5
 friend void h5_read(h5::group fg, std::string subgroup_name, discrete_mesh &m) {
  h5::group gr = fg.open_group(subgroup_name);
  typename discrete_mesh::domain_t dom;
  h5_read(gr, "domain", dom);
  m = discrete_mesh(std::move(dom));
 }
Example #9
0
 /// Write into HDF5
 friend void h5_write(h5::group fg, std::string subgroup_name, discrete_mesh const &m) {
  h5::group gr = fg.create_group(subgroup_name);
  h5_write(gr, "domain", m.domain());
 }
Example #10
0
 /// Read from HDF5
 friend void h5_read(h5::group fg, std::string subgroup_name, gf_mesh &m) {
  h5::group gr = fg.open_group(subgroup_name);
  auto l = [gr](int N, auto &m) { h5_read(gr, "MeshComponent" + std::to_string(N), m); };
  triqs::tuple::for_each_enumerate(m.components(), l);
 }
Example #11
0
 // HDF5 interface
 friend void h5_write (h5::group g, std::string const & name, measure_set const & ms) {
     auto gr = g.create_group(name);
     for (auto & p : ms.m_map) h5_write(gr,p.first, p.second);
 }
Example #12
0
 friend void h5_read(h5::group fg, std::string subgroup_name, tail_impl &t) {
  auto gr = fg.open_group(subgroup_name);
  h5_read(gr, "omin", t.omin);
  h5_read(gr, "mask", t._mask);
  h5_read(gr, "data", t._data);
 }
Example #13
0
 friend void h5_write(h5::group fg, std::string subgroup_name, tail_impl const &t) {
  auto gr = fg.create_group(subgroup_name);
  h5_write(gr, "omin", t.omin);
  h5_write(gr, "mask", t._mask);
  h5_write(gr, "data", t._data);
 }
 /// Read from HDF5
 void h5_read(h5::group fg, std::string subgroup_name, bravais_lattice& bl) {
  h5::group gr = fg.open_group(subgroup_name);
  matrix<double> u;
  h5_read(gr, "units", u);
  bl = bravais_lattice{u}; // NOT COMPLETE
 }
 /// Write into HDF5
 void h5_write(h5::group fg, std::string subgroup_name, bravais_lattice const& bl) {
  h5::group gr = fg.create_group(subgroup_name);
  h5_write(gr, "units", bl.units_); // NOT COMPLETE
 }
 /// Read from HDF5
 void h5_read(h5::group fg, std::string subgroup_name, brillouin_zone& bz) {
  h5::group gr = fg.open_group(subgroup_name);
  bravais_lattice bl;
  h5_read(gr, "bravais_lattice", bl);
  bz = brillouin_zone{bl};
 }
 //------------------------------------------------------------------------------------
 /// Write into HDF5
 void h5_write(h5::group fg, std::string subgroup_name, brillouin_zone const& bz) {
  h5::group gr = fg.create_group(subgroup_name);
  h5_write(gr, "bravais_lattice", bz.lattice_);
 }
Example #18
0
 /// Read from HDF5
 friend void h5_read(h5::group fg, std::string subgroup_name, gf_mesh& m) {
  h5::group gr = fg.open_group(subgroup_name);
  auto dims = h5::h5_read<std::vector<int>>(gr, "dims");
  m = gf_mesh(dims[0], dims[1], dims[2]);
 }
Example #19
0
 /// Write into HDF5
 friend void h5_write(h5::group fg, std::string subgroup_name, matsubara_domain const &d) {
  h5::group gr = fg.create_group(subgroup_name);
  h5_write(gr, "beta", d.beta);
  h5_write(gr, "statistic", (d.statistic == Fermion ? "F" : "B"));
 }
Example #20
0
 friend void h5_read (h5::group g, std::string const & name, measure_set & ms) {
     auto gr = g.open_group(name);
     for (auto & p : ms.m_map) h5_read(gr,p.first, p.second);
 }
Example #21
0
 /// Write into HDF5
 friend void h5_write(h5::group fg, std::string subgroup_name, gf_mesh const &m) {
  h5::group gr = fg.create_group(subgroup_name);
  h5_write(gr, "domain", m.domain());
  h5_write(gr, "size", long(m.size()));
  h5_write(gr, "positive_freq_only", (m._positive_only?1:0));
 }