// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AlignSections::execute()
{
  setErrorCondition(0);
  VoxelDataContainer* m = getVoxelDataContainer();
  if (NULL == m)
  {
    setErrorCondition(-1);
    std::stringstream ss;
    ss << " DataContainer was NULL";
    notifyErrorMessage(ss.str(), -1);
    return;
  }

  int64_t totalPoints = m->getTotalPoints();
  size_t numgrains = m->getNumFieldTuples();
  size_t numensembles = m->getNumEnsembleTuples();
  dataCheck(false, totalPoints, numgrains, numensembles);
  if (getErrorCondition() < 0)
  {
    return;
  }

  size_t udims[3] = {0,0,0};
  m->getDimensions(udims);
#if (CMP_SIZEOF_SIZE_T == 4)
  typedef int32_t DimType;
#else
  typedef int64_t DimType;
#endif
  DimType dims[3] = {
    static_cast<DimType>(udims[0]),
    static_cast<DimType>(udims[1]),
    static_cast<DimType>(udims[2]),
  };

  int slice;
  int xspot, yspot;
  DimType newPosition;
  DimType currentPosition;
  //  unsigned int  phase2;

  std::vector<int> xshifts;
  std::vector<int> yshifts;
  xshifts.resize(dims[2],0);
  yshifts.resize(dims[2],0);

  find_shifts(xshifts, yshifts);

  std::list<std::string> voxelArrayNames = m->getCellArrayNameList();
  DimType progIncrement = dims[2]/100;
  DimType prog = 1;
  int progressInt = 0;
  std::stringstream ss;

  for (DimType i = 1; i < dims[2]; i++)
  {
    if (i > prog)
    {
      ss.str("");
      progressInt = ((float)i/dims[2])*100.0;
      ss << "Transferring Cell Data - " << progressInt << "% Complete";
      notifyStatusMessage(ss.str());
      prog = prog + progIncrement;
    }
    if (getCancel() == true)
    {
      return;
    }
    slice = static_cast<int>( (dims[2] - 1) - i );
    for (DimType l = 0; l < dims[1]; l++)
    {
      for (DimType n = 0; n < dims[0]; n++)
      {
        if(yshifts[i] >= 0) yspot = static_cast<int>(l);
        else if(yshifts[i] < 0) yspot = static_cast<int>( dims[1] - 1 - l );
        if(xshifts[i] >= 0) xspot = static_cast<int>(n);
        else if(xshifts[i] < 0) xspot = static_cast<int>( dims[0] - 1 - n );
        newPosition = (slice * dims[0] * dims[1]) + (yspot * dims[0]) + xspot;
        currentPosition = (slice * dims[0] * dims[1]) + ((yspot + yshifts[i]) * dims[0]) + (xspot + xshifts[i]);
        if((yspot + yshifts[i]) >= 0 && (yspot + yshifts[i]) <= dims[1] - 1 && (xspot + xshifts[i]) >= 0
           && (xspot + xshifts[i]) <= dims[0] - 1)
        {
          for(std::list<std::string>::iterator iter = voxelArrayNames.begin(); iter != voxelArrayNames.end(); ++iter)
          {
            std::string name = *iter;
            IDataArray::Pointer p = m->getCellData(*iter);
            p->CopyTuple(currentPosition, newPosition);
          }
        }
        if((yspot + yshifts[i]) < 0 || (yspot + yshifts[i]) > dims[1] - 1 || (xspot + xshifts[i]) < 0
           || (xspot + xshifts[i]) > dims[0] - 1)
        {
          for(std::list<std::string>::iterator iter = voxelArrayNames.begin(); iter != voxelArrayNames.end(); ++iter)
          {
            std::string name = *iter;
            IDataArray::Pointer p = m->getCellData(*iter);
            p->InitializeTuple(newPosition, 0.0);          }
        }
      }
    }
  }

  // If there is an error set this to something negative and also set a message
  notifyStatusMessage("Complete");
}
Example #2
0
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void OpenCloseBadData::execute()
{
  setErrorCondition(0);
 // int err = 0;
  VoxelDataContainer* m = getVoxelDataContainer();
  if(NULL == m)
  {
    setErrorCondition(-999);
    notifyErrorMessage("The DataContainer Object was NULL", -999);
    return;
  }


  int64_t totalPoints = m->getTotalPoints();
  dataCheck(false, totalPoints, m->getNumFieldTuples(), m->getNumEnsembleTuples());
  if (getErrorCondition() < 0 && getErrorCondition() != -305)
  {
    return;
  }
  setErrorCondition(0);

  Int32ArrayType::Pointer neighborsPtr = Int32ArrayType::CreateArray(totalPoints, "Neighbors");
  m_Neighbors = neighborsPtr->GetPointer(0);
  neighborsPtr->initializeWithValues(-1);

  size_t udims[3] = {0,0,0};
  m->getDimensions(udims);
#if (CMP_SIZEOF_SIZE_T == 4)
  typedef int32_t DimType;
#else
  typedef int64_t DimType;
#endif
  DimType dims[3] = {
    static_cast<DimType>(udims[0]),
    static_cast<DimType>(udims[1]),
    static_cast<DimType>(udims[2]),
  };

//  size_t count = 1;
  int good = 1;
//  int neighbor;
//  int index = 0;
//  float x, y, z;
//  DimType row, plane;
  int neighpoint;
  size_t numgrains = m->getNumFieldTuples();

  int neighpoints[6];
  neighpoints[0] = static_cast<int>(-dims[0] * dims[1]);
  neighpoints[1] = static_cast<int>(-dims[0]);
  neighpoints[2] = static_cast<int>(-1);
  neighpoints[3] = static_cast<int>(1);
  neighpoints[4] = static_cast<int>(dims[0]);
  neighpoints[5] = static_cast<int>(dims[0] * dims[1]);
  std::vector<int> currentvlist;

  size_t count = 0;
  int kstride, jstride;
  int grainname, grain;

  int current;
  int most;

  std::vector<int > n(numgrains + 1,0);
  for (int iteration = 0; iteration < m_NumIterations; iteration++)
  {
    for (int k = 0; k < dims[2]; k++)
    {
    kstride = static_cast<int>( dims[0]*dims[1]*k );
      for (int j = 0; j < dims[1]; j++)
      {
      jstride = static_cast<int>( dims[0]*j );
        for (int i = 0; i < dims[0]; i++)
        {
        count = kstride+jstride+i;
        std::stringstream ss;
        grainname = m_GrainIds[count];
        if (grainname == 0)
        {
			current = 0;
			most = 0;
			for (int l = 0; l < 6; l++)
			{
			  good = 1;
			  neighpoint = static_cast<int>( count + neighpoints[l] );
			  if (l == 0 && k == 0) good = 0;
			  if (l == 5 && k == (dims[2] - 1)) good = 0;
			  if (l == 1 && j == 0) good = 0;
			  if (l == 4 && j == (dims[1] - 1)) good = 0;
			  if (l == 2 && i == 0) good = 0;
			  if (l == 3 && i == (dims[0] - 1)) good = 0;
			  if (good == 1)
			  {
				  grain = m_GrainIds[neighpoint];
				  if (m_Direction == 0 && grain > 0)
				  {
					m_Neighbors[neighpoint] = count;
				  }
				  if ((grain > 0 && m_Direction == 1))
				  {
					n[grain]++;
					current = n[grain];
					if (current > most)
					{
					  most = current;
					  m_Neighbors[count] = neighpoint;
					}
				  }
			  }
			}
			if (m_Direction == 1)
			{
			  for (int l = 0; l < 6; l++)
			  {
  				good = 1;
				neighpoint = static_cast<int>( count + neighpoints[l] );
				if (l == 0 && k == 0) good = 0;
				if (l == 5 && k == (dims[2] - 1)) good = 0;
				if (l == 1 && j == 0) good = 0;
				if (l == 4 && j == (dims[1] - 1)) good = 0;
				if (l == 2 && i == 0) good = 0;
				if (l == 3 && i == (dims[0] - 1)) good = 0;
				if (good == 1)
				{
					grain = m_GrainIds[neighpoint];
					n[grain] = 0;
				}
			  }
			}
        }
      }
    }

    }
    std::list<std::string> voxelArrayNames = m->getCellArrayNameList();
    for (int j = 0; j < totalPoints; j++)
    {
      int grainname = m_GrainIds[j];
      int neighbor = m_Neighbors[j];
      if (neighbor >= 0)
      {
        if ( (grainname == 0 && m_GrainIds[neighbor] > 0 && m_Direction == 1)
            || (grainname > 0 && m_GrainIds[neighbor] == 0 && m_Direction == 0))
        {
            for(std::list<std::string>::iterator iter = voxelArrayNames.begin(); iter != voxelArrayNames.end(); ++iter)
            {
              std::string name = *iter;
              IDataArray::Pointer p = m->getCellData(*iter);
              p->CopyTuple(neighbor, j);
            }
        }
      }
    }
  }

  // If there is an error set this to something negative and also set a message
  notifyStatusMessage("Complete");
}