// ========================================================================
void process_elementblocks(Ioss::Region ®ion, stk::mesh::BulkData &bulk)
{
const Ioss::ElementBlockContainer& elem_blocks = region.get_element_blocks();
for(Ioss::ElementBlockContainer::const_iterator it = elem_blocks.begin();
it != elem_blocks.end(); ++it) {
Ioss::ElementBlock *entity = *it;
if (stk::io::include_entity(entity)) {
const std::string &name = entity->name();
const stk::mesh::MetaData& meta = stk::mesh::MetaData::get(bulk);
stk::mesh::Part* const part = meta.get_part(name);
STKIORequire(part != NULL);
const stk::topology topo = part->topology();
if (topo == stk::topology::INVALID_TOPOLOGY) {
std::ostringstream msg ;
msg << " INTERNAL_ERROR: Part " << part->name() << " returned INVALID from get_topology()";
throw std::runtime_error( msg.str() );
}
std::vector<int> elem_ids ;
std::vector<int> connectivity ;
entity->get_field_data("ids", elem_ids);
entity->get_field_data("connectivity", connectivity);
size_t element_count = elem_ids.size();
int nodes_per_elem = topo.num_nodes();
stk::mesh::EntityIdVector connectivity2(nodes_per_elem);
std::vector<int>::const_iterator connBegin = connectivity.begin();
std::vector<stk::mesh::Entity> elements(element_count);
for(size_t i=0; i<element_count; ++i, connBegin += nodes_per_elem) {
std::copy(connBegin, connBegin + nodes_per_elem, connectivity2.begin());
elements[i] = stk::mesh::declare_element(bulk, *part, elem_ids[i], connectivity2);
}
// For this example, we are just taking all attribute fields
// found on the io database and populating fields on the
// corresponding mesh part. In practice, would probably be
// selective about which attributes to use...
Ioss::NameList names;
entity->field_describe(Ioss::Field::ATTRIBUTE, &names);
for (Ioss::NameList::const_iterator I = names.begin(); I != names.end(); ++I) {
if (*I == "attribute" && names.size() > 1)
continue;
stk::mesh::FieldBase *field = meta.get_field<stk::mesh::FieldBase>(stk::topology::ELEMENT_RANK, *I);
stk::io::field_data_from_ioss(bulk, field, elements, entity, *I);
}
}
}
}
void generate_element_ids(RegionVector &part_mesh,
const std::vector<INT> &local_element_map,
std::vector<INT> &global_element_map)
{
// Follow same logic as 'build_local_element_map' to ensure elements
// are processed in same order.
// Many models do not use the element number map at all, so they
// will have a 1..numel map. If all parts have that, then we don't
// want to do any fancy duplicate removal and other processing, just
// output a 1..numel map for the output mesh... We still generate
// the global_element_map, but check whether any of the part blocks
// have a non-1..numel map...
bool has_map = false;
size_t offset = 0;
for (size_t p = 0; p < part_mesh.size(); p++) {
Ioss::ElementBlockContainer ebs = part_mesh[p]->get_element_blocks();
Ioss::ElementBlockContainer::const_iterator i = ebs.begin();
while (i != ebs.end()) {
Ioss::ElementBlock *eb = *i++;
INT num_elem = eb->get_property("entity_count").get_int();
if (!entity_is_omitted(eb)) {
std::vector<INT> part_ids;
eb->get_field_data("ids", part_ids);
if (!has_map) {
INT eb_offset = eb->get_offset();
for (INT j = 0; j < num_elem; j++) {
if (part_ids[j] != eb_offset+j+1) {
has_map = true;
break;
}
}
}
for (INT j = 0; j < num_elem; j++) {
INT gpos = local_element_map[offset+j];
if (gpos >= 0)
global_element_map[gpos] = part_ids[j];
}
}
offset += num_elem;
}
}
// Check for duplicates...
// NOTE: Used to use an indexed sort here, but if there was a
// duplicate id, it didnt really care whether part 1 or part N's
// index came first which causes really screwy element maps.
// Instead, lets sort a vector containing pairs of <id, index> where
// the index will always? increase for increasing part numbers...
std::vector<std::pair<INT,INT> > index(global_element_map.size());
for (size_t i=0; i < index.size(); i++) {
index[i] = std::make_pair(global_element_map[i],(INT)i);
}
std::sort(index.begin(), index.end());
INT max_id = index[index.size()-1].first + 1;
size_t beg = 0;
for (size_t i=1; i < index.size(); i++) {
if (index[beg].first == index[i].first) {
// Duplicate found... Assign it a new id greater than any
// existing id... (What happens if we exceed INT_MAX?)
global_element_map[index[i].second] = max_id++;
// Keep 'beg' the same in case multiple duplicate of this value.
} else {
beg = i;
}
}
}