/** Execute the algorithm.
*/
void SaveIsawPeaks::exec()
{
// Section header
std::string header = "2 SEQN H K L COL ROW CHAN L2 2_THETA AZ WL D IPK INTI SIGI RFLG";
std::string filename = getPropertyValue("Filename");
PeaksWorkspace_sptr ws = getProperty("InputWorkspace");
std::vector<Peak> peaks = ws->getPeaks();
// We must sort the peaks first by run, then bank #, and save the list of workspace indices of it
typedef std::map<int, std::vector<size_t> > bankMap_t;
typedef std::map<int, bankMap_t> runMap_t;
std::set<int> uniqueBanks;
runMap_t runMap;
for (size_t i=0; i < peaks.size(); ++i)
{
Peak & p = peaks[i];
int run = p.getRunNumber();
int bank = 0;
std::string bankName = p.getBankName();
if (bankName.size() <= 4)
{
g_log.information() << "Could not interpret bank number of peak " << i << "(" << bankName << ")\n";
continue;
}
// Take out the "bank" part of the bank name and convert to an int
bankName = bankName.substr(4, bankName.size()-4);
Strings::convert(bankName, bank);
// Save in the map
runMap[run][bank].push_back(i);
// Track unique bank numbers
uniqueBanks.insert(bank);
}
Instrument_const_sptr inst = ws->getInstrument();
if (!inst) throw std::runtime_error("No instrument in PeaksWorkspace. Cannot save peaks file.");
double l1; V3D beamline; double beamline_norm; V3D samplePos;
inst->getInstrumentParameters(l1, beamline, beamline_norm, samplePos);
std::ofstream out;
bool append = getProperty("AppendFile");
if (append)
{
out.open( filename.c_str(), std::ios::app);
}
else
{
out.open( filename.c_str());
out << "Version: 2.0 Facility: SNS " ;
out << " Instrument: " << inst->getName() << " Date: " ;
//TODO: The experiment date might be more useful than the instrument date.
// For now, this allows the proper instrument to be loaded back after saving.
Kernel::DateAndTime expDate = inst->getValidFromDate() + 1.0;
out << expDate.to_ISO8601_string() << std::endl;
out << "6 L1 T0_SHIFT" << std::endl;
out << "7 "<< std::setw( 10 ) ;
out << std::setprecision( 4 ) << std::fixed << ( l1*100 ) ;
out << std::setw( 12 ) << std::setprecision( 3 ) << std::fixed ;
// Time offset of 0.00 for now
out << "0.000" << std::endl;
// ============================== Save .detcal info =========================================
if (true)
{
out << "4 DETNUM NROWS NCOLS WIDTH HEIGHT DEPTH DETD CenterX CenterY CenterZ BaseX BaseY BaseZ UpX UpY UpZ"
<< std::endl;
// Here would save each detector...
std::set<int>::iterator it;
for (it = uniqueBanks.begin(); it != uniqueBanks.end(); it++)
{
// Build up the bank name
int bank = *it;
std::ostringstream mess;
mess << "bank" << bank;
std::string bankName = mess.str();
// Retrieve it
RectangularDetector_const_sptr det = boost::dynamic_pointer_cast<const RectangularDetector>(inst->getComponentByName(bankName));
if (det)
{
// Center of the detector
V3D center = det->getPos();
// Distance to center of detector
double detd = (center - inst->getSample()->getPos()).norm();
// Base unit vector (along the horizontal, X axis)
V3D base = det->getAtXY(det->xpixels()-1,0)->getPos() - det->getAtXY(0,0)->getPos();
base.normalize();
// Up unit vector (along the vertical, Y axis)
V3D up = det->getAtXY(0,det->ypixels()-1)->getPos() - det->getAtXY(0,0)->getPos();
up.normalize();
// Write the line
out << "5 "
<< std::setw(6) << std::right << bank << " "
<< std::setw(6) << std::right << det->xpixels() << " "
<< std::setw(6) << std::right << det->ypixels() << " "
<< std::setw(7) << std::right << std::fixed << std::setprecision(4) << 100.0*det->xsize() << " "
<< std::setw(7) << std::right << std::fixed << std::setprecision(4) << 100.0*det->ysize() << " "
<< " 0.2000 "
<< std::setw(6) << std::right << std::fixed << std::setprecision(2) << 100.0*detd << " "
<< std::setw(9) << std::right << std::fixed << std::setprecision(4) << 100.0*center.X() << " "
<< std::setw(9) << std::right << std::fixed << std::setprecision(4) << 100.0*center.Y() << " "
<< std::setw(9) << std::right << std::fixed << std::setprecision(4) << 100.0*center.Z() << " "
<< std::setw(8) << std::right << std::fixed << std::setprecision(5) << base.X() << " "
<< std::setw(8) << std::right << std::fixed << std::setprecision(5) << base.Y() << " "
<< std::setw(8) << std::right << std::fixed << std::setprecision(5) << base.Z() << " "
<< std::setw(8) << std::right << std::fixed << std::setprecision(5) << up.X() << " "
<< std::setw(8) << std::right << std::fixed << std::setprecision(5) << up.Y() << " "
<< std::setw(8) << std::right << std::fixed << std::setprecision(5) << up.Z() << " "
<< std::endl;
}
}
}
}
// ============================== Save all Peaks =========================================
// Sequence number
int seqNum = 1;
// Go in order of run numbers
runMap_t::iterator runMap_it;
for (runMap_it = runMap.begin(); runMap_it != runMap.end(); runMap_it++)
{
// Start of a new run
int run = runMap_it->first;
bankMap_t & bankMap = runMap_it->second;
bankMap_t::iterator bankMap_it;
for (bankMap_it = bankMap.begin(); bankMap_it != bankMap.end(); bankMap_it++)
{
// Start of a new bank.
int bank = bankMap_it->first;
std::vector<size_t> & ids = bankMap_it->second;
if (ids.size() > 0)
{
// Write the bank header
out << "0 NRUN DETNUM CHI PHI OMEGA MONCNT" << std::endl;
out << "1" << std::setw( 5 ) << run << std::setw( 7 ) <<
std::right << bank;
// Determine goniometer angles by calculating from the goniometer matrix of a peak in the list
Goniometer gon(peaks[ids[0]].getGoniometerMatrix());
std::vector<double> angles = gon.getEulerAngles("yzy");
double phi = angles[2];
double chi = angles[1];
double omega = angles[0];
out << std::setw( 7 ) << std::fixed << std::setprecision( 2 ) << chi << " ";
out << std::setw( 7 ) << std::fixed << std::setprecision( 2 ) << phi << " ";
out << std::setw( 7 ) << std::fixed << std::setprecision( 2 ) << omega << " ";
out << std::setw( 7 ) << (int)( 0 ) << std::endl;
out << header << std::endl;
// Go through each peak at this run / bank
for (size_t i=0; i < ids.size(); i++)
{
size_t wi = ids[i];
Peak & p = peaks[wi];
// Sequence (run) number
out << "3" << std::setw( 7 ) << seqNum;
// HKL is flipped by -1 due to different q convention in ISAW vs mantid.
out << std::setw( 5 ) << Utils::round(-p.getH())
<< std::setw( 5 ) << Utils::round(-p.getK())
<< std::setw( 5 ) << Utils::round(-p.getL());
// Row/column
out << std::setw( 8 ) << std::fixed << std::setprecision( 2 )
<< static_cast<double>(p.getCol()) << " ";
out << std::setw( 8 ) << std::fixed << std::setprecision( 2 )
<< static_cast<double>(p.getRow()) << " ";
out << std::setw( 8 ) << std::fixed << std::setprecision( 0 )
<< p.getTOF() << " ";
out << std::setw( 9 ) << std::fixed << std::setprecision( 3 )
<< (p.getL2()*100.0) << " ";
// This is the scattered beam direction
V3D dir = p.getDetPos() - inst->getSample()->getPos();
double scattering, azimuth;
// Two-theta = polar angle = scattering angle = between +Z vector and the scattered beam
scattering = dir.angle( V3D(0.0, 0.0, 1.0) );
// "Azimuthal" angle: project the beam onto the XY plane, and measure the angle between that and the +X axis (right-handed)
azimuth = atan2( dir.Y(), dir.X() );
out << std::setw( 9 ) << std::fixed << std::setprecision( 5 )
<< scattering << " "; //two-theta scattering
out << std::setw( 9 ) << std::fixed << std::setprecision( 5 )
<< azimuth << " ";
out << std::setw( 10 ) << std::fixed << std::setprecision( 6 )
<< p.getWavelength() << " ";
out << std::setw( 9 ) << std::fixed << std::setprecision( 4 )
<< p.getDSpacing() << " ";
out << std::setw( 8 ) << std::fixed << int(p.getBinCount()) << std::setw( 10 ) << " "
<< std::fixed << std::setprecision( 2 ) << p.getIntensity() << " ";
out << std::setw( 7 ) << std::fixed << std::setprecision( 2 )
<< p.getSigmaIntensity() << " ";
int thisReflag = 310;
out << std::setw( 5 ) << thisReflag;
out << std::endl;
// Count the sequence
seqNum++;
}
}
}
}
out.flush();
out.close();
// //REMOVE:
// std::string line;
// std::ifstream myfile (filename.c_str());
// if (myfile.is_open())
// {
// while ( myfile.good() )
// {
// getline (myfile,line);
// std::cout << line << std::endl;
// }
// myfile.close();
// }
}
/**
* Set the run start and end
* @param start :: The run start
* @param end :: The run end
*/
void Run::setStartAndEndTime(const Kernel::DateAndTime & start, const Kernel::DateAndTime & end)
{
this->addProperty<std::string>("start_time", start.to_ISO8601_string(), true);
this->addProperty<std::string>("end_time", end.to_ISO8601_string(), true);
}