bool MapDatabasePostgreSQL::saveBlock(const v3s16 &pos, const std::string &data)
{
	// Verify if we don't overflow the platform integer with the mapblock size
	if (data.size() > INT_MAX) {
		errorstream << "Database_PostgreSQL::saveBlock: Data truncation! "
			<< "data.size() over 0xFFFFFFFF (== " << data.size()
			<< ")" << std::endl;
		return false;
	}

	verifyDatabase();

	s32 x, y, z;
	x = htonl(pos.X);
	y = htonl(pos.Y);
	z = htonl(pos.Z);

	const void *args[] = { &x, &y, &z, data.c_str() };
	const int argLen[] = {
		sizeof(x), sizeof(y), sizeof(z), (int)data.size()
	};
	const int argFmt[] = { 1, 1, 1, 1 };

	if (getPGVersion() < 90500) {
		execPrepared("write_block_update", ARRLEN(args), args, argLen, argFmt);
		execPrepared("write_block_insert", ARRLEN(args), args, argLen, argFmt);
	} else {
		execPrepared("write_block", ARRLEN(args), args, argLen, argFmt);
	}
	return true;
}
Exemple #2
0
static void test(struct socket_server *ss) {
	pthread_t pid;
	pthread_create(&pid, NULL, _poll, ss);
	int i = 0;

	int connid = socket_server_connect(ss, 400, "127.0.0.1", 8888);
	
	getc(stdin);
	socket_server_start(ss, 401, connid);

	char* tmp[3] = { "hello", "world", "wong" };
	int cnt = ARRLEN(tmp);
	
	char* contents[ARRLEN(tmp)];
	for (i = 0; i < cnt; ++i)
	{
		contents[i] = malloc(strlen(tmp[i]) + 1); 
		memcpy(contents[i], tmp[i], strlen(tmp[i]));
	}
	
	for (i = 0; i < cnt; ++i)
	{
		socket_server_send(ss, connid, contents[i], strlen(contents[i]));
		getc(stdin);
	}
	printf("done\n");

	pthread_join(pid, NULL);
}
Exemple #3
0
int updateMemory(void)
{

#define ARRLEN(X) (sizeof(X) / sizeof(X[0]))
    long pagesize; /* using a long promotes the arithmetic */
    size_t len;

    {
        static int mib[] = {CTL_HW, HW_PHYSMEM};

        len = sizeof(Total);
        sysctl(mib, ARRLEN(mib), &Total, &len, NULL, 0);
        Total >>= 10;
    }

    {
        struct uvmexp x;
        static int mib[] = {CTL_VM, VM_UVMEXP};

        len = sizeof(x);
        STotal = SUsed = SFree = -1;
        pagesize = 1;
        if(-1 < sysctl(mib, ARRLEN(mib), &x, &len, NULL, 0))
        {
            pagesize = x.pagesize;
            STotal = (pagesize * x.swpages) >> 10;
            SUsed = (pagesize * x.swpginuse) >> 10;
            SFree = STotal - SUsed;
        }
    }
Exemple #4
0
void test_nghttp2_hd_deflate_bound(void) {
  nghttp2_hd_deflater deflater;
  nghttp2_nv nva[] = {MAKE_NV(":method", "GET"), MAKE_NV("alpha", "bravo")};
  nghttp2_bufs bufs;
  size_t bound, bound2;
  nghttp2_mem *mem;

  mem = nghttp2_mem_default();
  frame_pack_bufs_init(&bufs);

  nghttp2_hd_deflate_init(&deflater, mem);

  bound = nghttp2_hd_deflate_bound(&deflater, nva, ARRLEN(nva));

  CU_ASSERT(12 + 6 * 2 * 2 + nva[0].namelen + nva[0].valuelen + nva[1].namelen +
                nva[1].valuelen ==
            bound);

  nghttp2_hd_deflate_hd_bufs(&deflater, &bufs, nva, ARRLEN(nva));

  CU_ASSERT(bound > (size_t)nghttp2_bufs_len(&bufs));

  bound2 = nghttp2_hd_deflate_bound(&deflater, nva, ARRLEN(nva));

  CU_ASSERT(bound == bound2);

  nghttp2_bufs_free(&bufs);
  nghttp2_hd_deflate_free(&deflater);
}
int main(void)
{
	int A[] = {6, 2, 4, 3, 5, 1}; 
	int i = 0;

	
	clock_t begin, end;
	
	printf("Tal før sortering:\n  ");
	
	for(i = 0; i < ARRLEN(A); i++)
		printf("%d  ", A[i]);
		
	printf("\n");
	
	begin = clock();
	MergeSort(A, 0, ARRLEN(A) - 1);
	end = clock();
	
	printf("Tal efter sortering:\n  ");
	
	for(i = 0; i < ARRLEN(A); i++)	
		printf("%d  ", A[i]);
		
	printf("\n");	
	
	printf("Kørselstid = %f\n", (double)(end - begin) / CLOCKS_PER_SEC);
}
Exemple #6
0
static int generateOFFSIVAL(OFFSIVALARR *oivr, 
			    int d_min, int d_max, 
			    const ResultSet *rsp)
     /**< Collect position intervals for the top scoring results of
      * the largest fragment.
      * Array of results must have been sorted by rsr[i].swatscor.
      */
{
  int errcode;
  struct SETUPOFFSIVALARG_ arg;
  
  resultSetGetNumberOfResultsInSegment(0, rsp);
  ARRLEN(*oivr) = (size_t) 0;

  if (resultSetGetNumberOfResultsInSegment(0, rsp) < 1) 
    return ERRCODE_SUCCESS;

  arg.dmin = (SEQLEN_t) (d_min < 0)? 0: d_min;
  arg.dmax = (SEQLEN_t) (d_max < 0)? 0: d_max;
  if (arg.dmin > arg.dmax) 
    return ERRCODE_ASSERT;
  
  arg.oivr = *oivr;
  arg.max_rank = 0;
  if ((errcode = resultSetDo(&arg, setupOFFSIVALcbf, rsp)))
    return errcode;
  *oivr = arg.oivr;

  /* sort intervals by sequence and lower limit */
  qsort(*oivr, ARRLEN(*oivr), sizeof(OFFSIVAL), cmpOFFSIVAL);
  
  return ERRCODE_SUCCESS; 
}
Exemple #7
0
static void resetPairs(ResultPairs *p)
{
  ARRLEN(p->mpr) = 0;
  ARRLEN(p->ivr) = 0;
  p->status = 0;
  p->n_proper = 0;
  p->n_within = 0;
}
Exemple #8
0
void size_readable(float *size, const char **unit)
{
	const char *units[] = { "", "K", "M", "G" };
	int i;

	for (i = 0; i < ARRLEN(units) && *size > 1024.0; i++)
		*size /= 1024.0;
	*unit = units[MIN(i, ARRLEN(units) - 1)];
}
Exemple #9
0
void resultSetBlankPairs(ResultPairs *p)
{
  if ((p)) {
    ARRLEN(p->ivr) = 0;
    ARRLEN(p->mpr) = 0;
    p->status = 0;
    p->n_proper = 0;
    p->n_within = 0;
    p->dmin = 0;
    p->dmax = 0;
  }
}
Exemple #10
0
static void run_nghttp2_hd(void) {
  nghttp2_hd_deflater deflater;
  nghttp2_hd_inflater inflater;
  nghttp2_bufs bufs;
  int rv;
  nghttp2_nv nva1[] = {
      MAKE_NV(":scheme", "https"), MAKE_NV(":authority", "example.org"),
      MAKE_NV(":path", "/slashdot"),
      MAKE_NV("accept-encoding", "gzip, deflate"), MAKE_NV("foo", "bar")};
  nghttp2_nv nva2[] = {
      MAKE_NV(":scheme", "https"), MAKE_NV(":authority", "example.org"),
      MAKE_NV(":path", "/style.css"), MAKE_NV("cookie", "nghttp2=FTW"),
      MAKE_NV("foo", "bar2")};

  rv = frame_pack_bufs_init(&bufs);

  if (rv != 0) {
    return;
  }

  rv = nghttp2_hd_deflate_init(&deflater, nghttp2_mem_fm());

  if (rv != 0) {
    goto deflate_init_fail;
  }

  rv = nghttp2_hd_inflate_init(&inflater, nghttp2_mem_fm());

  if (rv != 0) {
    goto inflate_init_fail;
  }

  rv = deflate_inflate(&deflater, &inflater, &bufs, nva1, ARRLEN(nva1),
                       nghttp2_mem_fm());

  if (rv != 0) {
    goto deflate_hd_fail;
  }

  rv = deflate_inflate(&deflater, &inflater, &bufs, nva2, ARRLEN(nva2),
                       nghttp2_mem_fm());

  if (rv != 0) {
    goto deflate_hd_fail;
  }

deflate_hd_fail:
  nghttp2_hd_inflate_free(&inflater);
inflate_init_fail:
  nghttp2_hd_deflate_free(&deflater);
deflate_init_fail:
  nghttp2_bufs_free(&bufs);
}
Exemple #11
0
static int flagOutPairsWithDoubleFragments(const ResultPairs *pairp,
					   const ResultSet *rsrp, 
					   const ResultSet *rsmp)
{
  int errcode;
  MATEPAIRARR mpr = pairp->mpr;
  size_t npairs = ARRLEN(pairp->mpr);
  MAPFLG_t const mask = MAPFLG_PROPER | MAPFLG_WITHIN | MAPFLG_INVALID;
  MAPFLG_t const properflg = MAPFLG_PROPER | MAPFLG_WITHIN;
  int nn, i, j;
  short qsegnoA, qsegnoB;

  if (npairs > INT_MAX)
    return ERRCODE_OVERFLOW;

  nn = (int) npairs;
  if ((errcode = resultSetGetNumberOfSegments(NULL, &qsegnoA, rsrp)))
    return errcode;

  if ((errcode = resultSetGetNumberOfSegments(NULL, &qsegnoB, rsmp)))
    return errcode;

  if (nn < 2 || (qsegnoA < 1 && qsegnoB < 1))
    return ERRCODE_SUCCESS;
  
  for (i=0; i<nn; i++) {
    if ((mpr[i].mapflg&mask) == properflg) {
      /* is first proper pair, flag out all other pairs with complementary fragments */
      int sxA = resultGetFragmentNo(mpr[i].ap);
      int sxB = resultGetFragmentNo(mpr[i].bp);
 
      for (j=0; j<nn; j++) {
	if (!(mpr[j].mapflg&MAPFLG_INVALID) &&
	    j != i &&
	    (mpr[j].mapflg&properflg) != properflg &&
	    (resultGetFragmentNo(mpr[j].ap) == sxA ||
	     resultGetFragmentNo(mpr[j].bp) == sxB)
	    )
	  mpr[j].mapflg |= MAPFLG_INVALID;
      }
    }
  }
  /* skip the flagged out pairs */
  for (j=0; j<nn && !(mpr[j].mapflg&MAPFLG_INVALID); j++);
  for (i=j+1; i<nn; i++) {
    if (!(mpr[i].mapflg&MAPFLG_INVALID)) 
      mpr[j++] = mpr[i];
  }
  ARRLEN(mpr) = (size_t) j;

  return ERRCODE_SUCCESS;
}
Exemple #12
0
void test_nghttp2_hd_deflate_same_indexed_repr(void) {
  nghttp2_hd_deflater deflater;
  nghttp2_hd_inflater inflater;
  nghttp2_nv nva1[] = {MAKE_NV("cookie", "alpha"), MAKE_NV("cookie", "alpha")};
  nghttp2_nv nva2[] = {MAKE_NV("cookie", "alpha"), MAKE_NV("cookie", "alpha"),
                       MAKE_NV("cookie", "alpha")};
  nghttp2_bufs bufs;
  ssize_t blocklen;
  nva_out out;
  int rv;
  nghttp2_mem *mem;

  mem = nghttp2_mem_default();
  frame_pack_bufs_init(&bufs);

  nva_out_init(&out);
  CU_ASSERT(0 == nghttp2_hd_deflate_init(&deflater, mem));
  CU_ASSERT(0 == nghttp2_hd_inflate_init(&inflater, mem));

  /* Encode 2 same headers.  Emit 1 literal reprs and 1 index repr. */
  rv = nghttp2_hd_deflate_hd_bufs(&deflater, &bufs, nva1, ARRLEN(nva1));
  blocklen = nghttp2_bufs_len(&bufs);

  CU_ASSERT(0 == rv);
  CU_ASSERT(blocklen > 0);
  CU_ASSERT(blocklen == inflate_hd(&inflater, &out, &bufs, 0, mem));

  CU_ASSERT(2 == out.nvlen);
  assert_nv_equal(nva1, out.nva, 2, mem);

  nva_out_reset(&out, mem);
  nghttp2_bufs_reset(&bufs);

  /* Encode 3 same headers.  This time, emits 3 index reprs. */
  rv = nghttp2_hd_deflate_hd_bufs(&deflater, &bufs, nva2, ARRLEN(nva2));
  blocklen = nghttp2_bufs_len(&bufs);

  CU_ASSERT(0 == rv);
  CU_ASSERT(blocklen == 3);
  CU_ASSERT(blocklen == inflate_hd(&inflater, &out, &bufs, 0, mem));

  CU_ASSERT(3 == out.nvlen);
  assert_nv_equal(nva2, out.nva, 3, mem);

  nva_out_reset(&out, mem);
  nghttp2_bufs_reset(&bufs);

  /* Cleanup */
  nghttp2_bufs_free(&bufs);
  nghttp2_hd_inflate_free(&inflater);
  nghttp2_hd_deflate_free(&deflater);
}
Exemple #13
0
MapgenSpecificParams *EmergeManager::createMapgenParams(const std::string &mgname)
{
	u32 i;
	for (i = 0; i < ARRLEN(reg_mapgens) && mgname != reg_mapgens[i].name; i++);
	if (i == ARRLEN(reg_mapgens)) {
		errorstream << "EmergeManager: Mapgen " << mgname <<
			" not registered" << std::endl;
		return NULL;
	}

	MapgenFactory *mgfactory = reg_mapgens[i].factory;
	return mgfactory->createMapgenParams();
}
Exemple #14
0
void test_nghttp2_hd_no_index(void) {
  nghttp2_hd_deflater deflater;
  nghttp2_hd_inflater inflater;
  nghttp2_bufs bufs;
  ssize_t blocklen;
  nghttp2_nv nva[] = {
      MAKE_NV(":method", "GET"), MAKE_NV(":method", "POST"),
      MAKE_NV(":path", "/foo"),  MAKE_NV("version", "HTTP/1.1"),
      MAKE_NV(":method", "GET"),
  };
  size_t i;
  nva_out out;
  int rv;
  nghttp2_mem *mem;

  mem = nghttp2_mem_default();

  /* 1st :method: GET can be indexable, last one is not */
  for (i = 1; i < ARRLEN(nva); ++i) {
    nva[i].flags = NGHTTP2_NV_FLAG_NO_INDEX;
  }

  frame_pack_bufs_init(&bufs);

  nva_out_init(&out);

  nghttp2_hd_deflate_init(&deflater, mem);
  nghttp2_hd_inflate_init(&inflater, mem);

  rv = nghttp2_hd_deflate_hd_bufs(&deflater, &bufs, nva, ARRLEN(nva));
  blocklen = nghttp2_bufs_len(&bufs);

  CU_ASSERT(0 == rv);
  CU_ASSERT(blocklen > 0);
  CU_ASSERT(blocklen == inflate_hd(&inflater, &out, &bufs, 0, mem));

  CU_ASSERT(ARRLEN(nva) == out.nvlen);
  assert_nv_equal(nva, out.nva, ARRLEN(nva), mem);

  CU_ASSERT(out.nva[0].flags == NGHTTP2_NV_FLAG_NONE);
  for (i = 1; i < ARRLEN(nva); ++i) {
    CU_ASSERT(out.nva[i].flags == NGHTTP2_NV_FLAG_NO_INDEX);
  }

  nva_out_reset(&out, mem);

  nghttp2_bufs_free(&bufs);
  nghttp2_hd_inflate_free(&inflater);
  nghttp2_hd_deflate_free(&deflater);
}
Exemple #15
0
Mapgen *EmergeManager::createMapgen(const std::string &mgname, int mgid,
	MapgenParams *mgparams)
{
	u32 i;
	for (i = 0; i != ARRLEN(reg_mapgens) && mgname != reg_mapgens[i].name; i++);
	if (i == ARRLEN(reg_mapgens)) {
		errorstream << "EmergeManager; mapgen " << mgname <<
			" not registered" << std::endl;
		return NULL;
	}

	MapgenFactory *mgfactory = reg_mapgens[i].factory;
	return mgfactory->createMapgen(mgid, mgparams, this);
}
Exemple #16
0
void test_nghttp2_nv_array_copy(void)
{
  nghttp2_nv *nva;
  ssize_t rv;
  nghttp2_nv emptynv[] = {MAKE_NV("", ""),
                          MAKE_NV("", "")};
  nghttp2_nv nv[] = {MAKE_NV("alpha", "bravo"),
                     MAKE_NV("charlie", "delta")};
  nghttp2_nv bignv;

  bignv.name = (uint8_t*)"echo";
  bignv.namelen = strlen("echo");
  bignv.valuelen = (1 << 14) - 1;
  bignv.value = malloc(bignv.valuelen);
  memset(bignv.value, '0', bignv.valuelen);

  rv = nghttp2_nv_array_copy(&nva, NULL, 0);
  CU_ASSERT(0 == rv);
  CU_ASSERT(NULL == nva);

  rv = nghttp2_nv_array_copy(&nva, emptynv, ARRLEN(emptynv));
  CU_ASSERT(0 == rv);
  CU_ASSERT(nva[0].namelen == 0);
  CU_ASSERT(nva[0].valuelen == 0);
  CU_ASSERT(nva[1].namelen == 0);
  CU_ASSERT(nva[1].valuelen == 0);

  nghttp2_nv_array_del(nva);

  rv = nghttp2_nv_array_copy(&nva, nv, ARRLEN(nv));
  CU_ASSERT(0 == rv);
  CU_ASSERT(nva[0].namelen == 5);
  CU_ASSERT(0 == memcmp("alpha", nva[0].name, 5));
  CU_ASSERT(nva[0].valuelen = 5);
  CU_ASSERT(0 == memcmp("bravo", nva[0].value, 5));
  CU_ASSERT(nva[1].namelen == 7);
  CU_ASSERT(0 == memcmp("charlie", nva[1].name, 7));
  CU_ASSERT(nva[1].valuelen == 5);
  CU_ASSERT(0 == memcmp("delta", nva[1].value, 5));

  nghttp2_nv_array_del(nva);

  /* Large header field is acceptable */
  rv = nghttp2_nv_array_copy(&nva, &bignv, 1);
  CU_ASSERT(0 == rv);

  nghttp2_nv_array_del(nva);

  free(bignv.value);
}
gint read_memswap(gulong *mem, gulong *swap, gulong *MT, gulong *MU, gulong *ST, gulong *SU)
{
    int pagesize;
    size_t len;

#define ARRLEN(X) (sizeof(X)/sizeof(X[0]))
    {
        static int mib[2];
        /* 64-bit datatype */
        if(sizeof(size_t) == 8) {
            mib[0] = CTL_HW;
            mib[1] = HW_PHYSMEM64;
        }
        /* assume 32-bit datatype */
        else {
            mib[0] = CTL_HW;
            mib[1] = HW_PHYSMEM;
        }
        len = sizeof(MTotal);
        sysctl(mib, ARRLEN(mib), &MTotal, &len, NULL, 0);
        MTotal >>= 10;
    }

    {
      static int mib[] = {CTL_HW, HW_PAGESIZE};
      len = sizeof(pagesize);
      sysctl(mib, ARRLEN(mib), &pagesize, &len, NULL, 0);
    }

#if __NetBSD_Version__ > 106210000
    {
      struct swapent* swap;
      int nswap, n;
      STotal = SUsed = SFree = 0;
      if ((nswap = swapctl(SWAP_NSWAP, NULL, 0)) > 0) {
        swap = (struct swapent*)malloc(nswap * sizeof(*swap));
        if (swapctl(SWAP_STATS, (void*)swap, nswap) == nswap) {
          for (n = 0; n < nswap; n++) {
            STotal += swap[n].se_nblks;
            SUsed  += swap[n].se_inuse;
          }

          STotal = dbtob(STotal >> 10);
          SUsed  = dbtob(SUsed >> 10);
          SFree  = STotal - SUsed;
        }
        free(swap);
      }
    }
Exemple #18
0
void img_init(img_t *img, win_t *win) {
	zoom_min = zoom_levels[0] / 100.0;
	zoom_max = zoom_levels[ARRLEN(zoom_levels) - 1] / 100.0;

	if (img == NULL || win == NULL)
		return;

	imlib_context_set_display(win->env.dpy);
	imlib_context_set_visual(win->env.vis);
	imlib_context_set_colormap(win->env.cmap);

	img->im = NULL;
	img->win = win;
	img->zoom = options->zoom;
	img->zoom = MAX(img->zoom, zoom_min);
	img->zoom = MIN(img->zoom, zoom_max);
	img->checkpan = false;
	img->dirty = false;
	img->aa = options->aa;
	img->alpha = true;
	img->slideshow = false;
	img->ss_delay = SLIDESHOW_DELAY * 1000;
	img->multi.cap = img->multi.cnt = 0;
	img->multi.animate = false;
}
Exemple #19
0
void img_init(img_t *img, win_t *win)
{
	zoom_min = zoom_levels[0] / 100.0;
	zoom_max = zoom_levels[ARRLEN(zoom_levels) - 1] / 100.0;

	if (img == NULL || win == NULL)
		return;

	imlib_context_set_display(win->env.dpy);
	imlib_context_set_visual(win->env.vis);
	imlib_context_set_colormap(win->env.cmap);

	img->im = NULL;
	img->win = win;
	img->scalemode = options->scalemode;
	img->zoom = options->zoom;
	img->zoom = MAX(img->zoom, zoom_min);
	img->zoom = MIN(img->zoom, zoom_max);
	img->checkpan = false;
	img->dirty = false;
	img->aa = ANTI_ALIAS;
	img->alpha = ALPHA_LAYER;
	img->multi.cap = img->multi.cnt = 0;
	img->multi.animate = false;
	img->multi.length = img->multi.repeat = 0;

	img->cmod = imlib_create_color_modifier();
	img->gamma = MIN(MAX(options->gamma, -GAMMA_RANGE), GAMMA_RANGE);
	
	img->ss.on = options->slideshow > 0;
	img->ss.delay = options->slideshow > 0 ? options->slideshow : SLIDESHOW_DELAY;
}
Exemple #20
0
void img_init(img_t *img, win_t *win)
{
	zoom_min = zoom_levels[0] / 100.0;
	zoom_max = zoom_levels[ARRLEN(zoom_levels) - 1] / 100.0;

	if (img == NULL || win == NULL)
		return;

	imlib_context_set_display(win->env.dpy);
	imlib_context_set_visual(win->env.vis);
	imlib_context_set_colormap(win->env.cmap);

	img->im = NULL;
	img->win = win;
	img->zoom = options->zoom;
	img->zoom = MAX(img->zoom, zoom_min);
	img->zoom = MIN(img->zoom, zoom_max);
	img->checkpan = false;
	img->dirty = false;
	img->aa = RENDER_ANTI_ALIAS;
	img->alpha = !RENDER_WHITE_ALPHA;
	img->multi.cap = img->multi.cnt = 0;
	img->multi.animate = false;

	img->cmod = imlib_create_color_modifier();
	img->gamma = MIN(MAX(options->gamma, -GAMMA_RANGE), GAMMA_RANGE);
}
Exemple #21
0
static int error_reply(nghttp2_session *session,
                       http2_stream_data *stream_data)
{
  int rv;
  int pipefd[2];
  nghttp2_nv hdrs[] = {
    MAKE_NV(":status", "404")
  };

  rv = pipe(pipefd);
  if(rv != 0) {
    warn("Could not create pipe");
    rv = nghttp2_submit_rst_stream(session, NGHTTP2_FLAG_NONE,
                                   stream_data->stream_id,
                                   NGHTTP2_INTERNAL_ERROR);
    if(rv != 0) {
      warnx("Fatal error: %s", nghttp2_strerror(rv));
      return -1;
    }
    return 0;
  }
  write(pipefd[1], ERROR_HTML, sizeof(ERROR_HTML) - 1);
  close(pipefd[1]);
  stream_data->fd = pipefd[0];
  if(send_response(session, stream_data->stream_id, hdrs, ARRLEN(hdrs),
                   pipefd[0]) != 0) {
    close(pipefd[0]);
    return -1;
  }
  return 0;
}
Exemple #22
0
static int fprintMatePairStats(FILE *fp, const MATEPAIRARR mpr, 
			       const RESULTPTRARR rresr, const RESULTPTRARR mresr,
			       int dmin, int dmax, RSLTPAIRLIB_t pairlibcode,
			       const InsHist *ihp)
{
  int i, npair = ARRLEN(mpr);
  int n = 0;
  MAPFLG_t bitflg;
  int32_t count, totnum;
  RESULT *rrp, *mrp;
  for (i=0; i<npair; i++) {
    count = totnum = 0;
    bitflg = testProperPair(mpr[i].ins, mpr[i].flag, dmin, dmax, pairlibcode);
    if ((bitflg & MAPFLG_WITHIN) && (bitflg & MAPFLG_PROPER))
      count = insGetHistoCount(&totnum, mpr[i].ins, 1, ihp);
    rrp = rresr[mpr[i].ax];
    mrp = mresr[mpr[i].bx];
    fprintf(fp, "PAIR[%i] posA=(%i, %llu), posB=(%i, %llu), ins=%i, mapqA=%i, mapqB=%i," \
	    "totnum=%i, counts=%i, mscor=%i\n",
	    n,
	    (int) rrp->sidx,
	    (long long unsigned int) rrp->s_start, 
	    (int) mrp->sidx,
	    (long long unsigned int) mrp->s_start,
	    mpr[i].ins, rrp->mapscor, mrp->mapscor,
	    totnum, count, mpr[i].mscor);    
    n++;
  }

  return n;
}
Exemple #23
0
static int getNumberOfProperPairs(int *n_proper, const MATEPAIRARR mpr)
/**< Returns the number of pairs within range that have the same best 
 * pair score.
 *
 * \param n_proper Returns the number of proper pairs within the range (can be NULL).
 * \param mpr Array of mate pairs.
 *
 * \note Pair mapping score must have been assigned (assignScoresToPairs) and the
 *       pairs sorted (cmpMATEPAIRbyScoreDescending) before this routine gets called.
 */
{
  int i, npair = ARRLEN(mpr);
  int n, npr;
  int32_t maxscor;

  if (npair < 1)
    return 0;

  n = npr = 0;

  for (i=0; i<npair; i++) {
    if (mpr[i].mscor < maxscor)
      break;
    if (mpr[i].mapflg & MAPFLG_WITHIN) {
      if (mpr[i].mapflg & MAPFLG_PROPER)  {
	npr++;
      }
      n++;
    }
  }

  return n;
}
Exemple #24
0
		void logRaw(LogLevel lev, const std::string &line)
		{
			STATIC_ASSERT(ARRLEN(g_level_to_android) == LL_MAX,
				mismatch_between_android_and_internal_loglevels);
			__android_log_print(g_level_to_android[lev],
				PROJECT_NAME_C, "%s", line.c_str());
		}
Exemple #25
0
int load(char *name)
{
	char path[255];
	char *err;
	struct dso_entry *entry = NULL;
	int i;
	
	for (i = 0; i < ARRLEN(loaded); i++) {
		if (!loaded[i].lib) {
			entry = &loaded[i];
			break;
		}
	}

	if (!entry) {
		ftdm_log(FTDM_LOG_CRIT, "Cannot load more libraries\n");
		return -1;
	}

	ftdm_build_dso_path(name, path, sizeof(path));
	ftdm_log(FTDM_LOG_DEBUG, "Loading %s!\n", path);
	entry->lib = ftdm_dso_open(path, &err);
	if (!entry->lib) {
		ftdm_log(FTDM_LOG_CRIT, "Cannot load library '%s': %s\n", path, err);
		return -1;
	}
	strncpy(entry->name, name, sizeof(entry->name)-1);
	entry->name[sizeof(entry->name)-1] = 0;
	return 0;
}
Exemple #26
0
int draw_particles(void)
{
  static Vec pointv[512];
  static size_t pointc = ARRLEN(pointv, Vec);
  double z = zoom();
  particle_t* p = particles;
  int i = 0;
  size_t count = HASH_COUNT(particles);

  while(i < count) {
    for(; p != NULL && i < pointc; p = p->hh.next, i++) {
      cpVect pos = cpBodyGetPos(p->body);

      if(fabs(pos.x) <= z / 2 && fabs(pos.y) <= z / 2) {
        // rough check if position is inside screen borders
        // TODO: possibly make it separate function
        pointv[i] = cpv2vec(pos);
      }
    }
    if(draw_points(pointv, i % pointc)) {
      return -1;
    }
  }

  return 0;
}
Exemple #27
0
static int getPairNumbersAndSortByCategory(int *n_proper, int *n_within, const ResultPairs *p)
/**< Return the number of all pairs, n_proper and n_within can be NULL 
 * Assign PAIR_CATEGORIES and sort according to those (proper pairs first)
 */
{
  int i, npr=0, nin=0;
  int n_pairs = ARRLEN(p->mpr);
  MATEPAIR *mp;

  for (i=0; i<n_pairs; i++) {
    mp = p->mpr + i;
    mp->cls = PAIRCAT_DEFAULT;
    if (mp->mapflg & MAPFLG_CONTIG) {
      if (mp->mapflg & MAPFLG_WITHIN) {
	nin++;
	if (mp->mapflg & MAPFLG_PROPER) {
	  mp->cls = PAIRCAT_PROPER;
	  npr++;
	} else {
	  mp->cls = PAIRCAT_WITHINLIMIT;
	}
      } else {
	mp->cls = PAIRCAT_SAMECONTIG;
      }
    }
  }
  if (n_pairs > 1)
    qsort(p->mpr, n_pairs, sizeof(MATEPAIR), cmpMATEPAIRbyCategoryDescending);

  if (n_proper) *n_proper = npr;
  if (n_within) *n_within = nin;

  return n_pairs;
}
void android_main(android_app *app)
{
	int retval = 0;
	porting::app_global = app;

	Thread::setName("Main");

	try {
		app_dummy();
		char *argv[] = {strdup(PROJECT_NAME), NULL};
		main(ARRLEN(argv) - 1, argv);
		free(argv[0]);
#if !EXEPTION_DEBUG
	} catch (std::exception &e) {
		errorstream << "Uncaught exception in main thread: " << e.what() << std::endl;
		retval = -1;
	} catch (...) {
		errorstream << "Uncaught exception in main thread!" << std::endl;
		retval = -1;
#else
	} catch (int) { // impossible
#endif
	}

	porting::cleanupAndroid();
	infostream << "Shutting down." << std::endl;
	exit(retval);
}
Exemple #29
0
static MATEPAIR *drawPairAtRandomByProbability(const MATEPAIRARR mpr)
{
  int i;
  const int n_pairs = ARRLEN(mpr);
  double pthresh;
  double s = 0.0;
  MATEPAIR *mp = NULL;
 
  for (i=0; i<n_pairs; i++)
    s += mpr[i].pbf;

  pthresh = RANDRAW_UNIFORM_1()*s;
  s = 0.0;

  for (i=0; i<n_pairs; i++) {
    s += mpr[i].pbf;
    if (s + MINLOGARG > pthresh) {
      mp = mpr + i;
      break;
    }
  }
  if (mp == NULL && n_pairs > 0) 
    mp = mpr + n_pairs - 1;
  
  return mp;
}
Exemple #30
0
static int setupOFFSIVALcbf(int *errcode, void *argp, const Result *rp)
{
  SEQLEN_t s_start, s_end, q_start, q_end;
  SEQNUM_t sidx;
  RSLTFLG_t status;
  SEQLEN_t r0;
  OFFSIVAL *ivp;
  struct SETUPOFFSIVALARG_ *p = (struct SETUPOFFSIVALARG_ *) argp;

  if (resultGetSWRank(rp) > p->max_rank)
    return RSLTSCBRTN_BREAK;

  *errcode = resultGetData(&q_start, &q_end,
			   &s_start, &s_end, &sidx,
			   NULL, &status, rp);

  if ((*errcode))
    return RSLTSCBRTN_STOP;

  if (status&RSLTFLAG_REVERSE) {
      r0 = s_end + q_start - 2;
  } else {
      r0 = s_start - q_start;
  }

  ARRNEXTP(ivp, p->oivr);
  if (!ivp) {
    *errcode = ERRCODE_NOMEM;
    return RSLTSCBRTN_STOP;
  }
  ivp->rp = rp;
  ivp->sidx = sidx;
  ivp->status = status;
  if (r0 >= p->dmax) {
    ivp->upper = r0 - p->dmin;
    ivp->lower = r0 - p->dmax;
  } else {
    ivp->upper = (r0 > p->dmin)? r0 - p->dmin: 0;
    ivp->lower = 0;
  }

  ARRNEXTP(ivp, p->oivr);
  if (!ivp) {
    *errcode = ERRCODE_NOMEM;
    return RSLTSCBRTN_STOP;
  }

  ivp->rp = rp;
  ivp->sidx = sidx;
  ivp->status = status;
  ivp->upper = r0 + p->dmax;
  ivp->lower = r0 + p->dmin;

  if (ivp->lower <= (ivp-1)->upper) {
    (ivp-1)->upper = ivp->upper;
    ARRLEN(p->oivr)--;
  }

  return RSLTSCBRTN_OK;
}