void StructureManager::AddFile(const char* filename)
{
if (!filename)
return;
char* localCopy = strdup(filename);
if (!localCopy)
return;
// Strip any trailing directory markers. Maybe we could load all files in the directory in this case,
// but it hardly seems worth the effort.
while (strlen(localCopy) > 0 && localCopy[strlen(localCopy) - 1] == '/')
localCopy[strlen(localCopy) - 1] = 0;
// Get the base file name
const char* basename = strrchr(localCopy, '/');
if (!basename)
basename = localCopy;
else
basename++;
// TODO: Check for duplicate file name.
// Figure out what kind of file we have and try to load it.
const char* extension = strrchr(basename, '.');
RNAStructure* structure = 0;
if (extension && !strncmp(extension, ".bpseq", 6))
{
structure = RNAStructure::CreateFromFile(localCopy, true);
}
else if (extension && !strncmp(extension, ".ct", 3))
{
structure = RNAStructure::CreateFromFile(localCopy, false);
}
else
{
if (strlen(filename) > 1000)
fl_message("Unknown file type: <file name too long>");
else
fl_message("Unknown file type: %s", filename);
return;
}
if (structure)
{
// TODO: Check for duplicates.
int index = AddFirstEmpty(structure);
MainWindow::AddStructure(structure->GetFilename(), index, false);
}
free(localCopy);
}
void StructureManager::AddFile(const char* filename)
{
if (!filename)
return;
char* localCopy = strdup(filename);
if (!localCopy)
{
return;
}
// Strip any trailing directory markers. Maybe we could load all files in the directory in this case,
// but it hardly seems worth the effort.
while (strlen(localCopy) > 0 && localCopy[strlen(localCopy) - 1] == '/')
localCopy[strlen(localCopy) - 1] = 0;
// Get the base file name
const char* basename = strrchr(localCopy, '/');
if (!basename)
basename = localCopy;
else
basename++;
// Don't load if it shares a filename with another loaded structure
// TODO: Check whether to allow multiple structures with the same filename
for (int i = 0; i < m_structureCount; ++i)
{
if (m_structures[i])
{
if (!strcmp(m_structures[i]->GetFilename(), basename))
{
fl_message("Already have a structure loaded with the filename: %s", basename);
return;
}
}
}
// Figure out what kind of file we have and try to load it.
const char* extension = strrchr(basename, '.');
RNAStructure* structure = 0;
if (extension && !strncmp(extension, ".bpseq", 6))
{
structure = RNAStructure::CreateFromFile(localCopy, true);
}
else if (extension && !strncmp(extension, ".ct", 3))
{
structure = RNAStructure::CreateFromFile(localCopy, false);
}
else if (extension && !strncmp(extension, ".nopct", 6))
{
structure = RNAStructure::CreateFromFile(localCopy, false);
}
else
{
if (strlen(filename) > 1000)
fl_message("Unknown file type: <file name too long>");
else
fl_message("Unknown file type: %s", filename);
return;
}
if (structure)
{
// TODO: Check for duplicates.
int count = (int)folders.size();
AddFirstEmpty(structure);
if(count == (int) folders.size()-1)
{
InputWindow* input_window = new InputWindow(400, 150, "New Folder Added",
folders[count]->folderName, InputWindow::FOLDER_INPUT);
while (input_window->visible())
{
Fl::wait();
}
bool same = false;
for(unsigned int ui = 0; ui < folders.size(); ui++)
{
if (!strcmp(folders[ui]->folderName,input_window->getName())
&& strcmp(input_window->getName(),""))
{
same = true;
break;
}
}
while (same) {
fl_message("Already have a folder with the name: %s, please choose another name.", input_window->getName());
delete input_window;
input_window = new InputWindow(400, 150, "New Folder Added",
folders[count]->folderName, InputWindow::FOLDER_INPUT);
while (input_window->visible())
{
Fl::wait();
}
same = false;
for(unsigned int ui = 0; ui < folders.size(); ui++)
{
if (!strcmp(folders[ui]->folderName,input_window->getName()))
{
same = true;
break;
}
}
}
if(strcmp(input_window->getName(), ""))
strcpy(folders[count]->folderName,input_window->getName());
MainWindow::AddFolder(folders[count]->folderName, count, false);
delete input_window;
}
//MainWindow::AddStructure(structure->GetFilename(), index, false);
}
free(localCopy); localCopy = NULL;
}
void StructureManager::AddFile(const char* filename)
{
if (!filename)
return;
char* localCopy = strdup(filename);
if (!localCopy) {
return;
}
// Get the base file name
const char* basename = strrchr(localCopy, '/');
if (!basename)
basename = localCopy;
else
basename++;
// Don't load if it shares a filename with another loaded structure
for (int i = 0; i < m_structureCount; ++i)
{
if (m_structures[i])
{
if (!strcmp(m_structures[i]->GetFilename(), basename))
{
fl_message("Already have a structure loaded with filename: %s",
basename);
free(localCopy);
return;
}
}
}
// Figure out what kind of file we have and try to load it.
const char* extension = strrchr(basename, '.');
extension = extension ? extension : "";
RNAStructure* structure = NULL;
if (extension && !strncasecmp(extension, ".bpseq", 6)) {
structure = RNAStructure::CreateFromFile(localCopy, true);
}
else if (extension && !strncasecmp(extension, ".ct", 3)) {
structure = RNAStructure::CreateFromFile(localCopy, false);
}
else if (extension && !strncasecmp(extension, ".nopct", 6)) {
structure = RNAStructure::CreateFromFile(localCopy, false);
}
else if(extension && (!strncasecmp(extension, ".dot", 4) ||
!strncasecmp(extension, ".bracket", 8) ||
!strncasecmp(extension, ".dbn", 4))) {
structure = RNAStructure::CreateFromDotBracketFile(localCopy);
}
else {
if (strlen(filename) > 1000)
fl_message("Unknown file type: <file name too long>");
else
fl_message("Unknown file type: %s . %s [%s]", filename, extension, basename);
return;
}
if (structure)
{
int count = (int)folders.size();
AddFirstEmpty(structure);
if(count == (int) folders.size()-1)
{
InputWindow* input_window = new InputWindow(400, 150,
"New Folder Added", folders[count]->folderName,
InputWindow::FOLDER_INPUT);
while (input_window->visible() && !GUI_USE_DEFAULT_FOLDER_NAMES)
{
Fl::wait();
}
bool same = false;
for(unsigned int ui = 0; ui < folders.size(); ui++)
{
if (!strcmp(folders[ui]->folderName,input_window->getName())
&& strcmp(input_window->getName(),""))
{
same = true;
break;
}
}
while (same) {
fl_message("Already have a folder with the name: %s, please choose another name.",
input_window->getName());
delete input_window;
input_window = new InputWindow(400, 150, "New Folder Added",
folders[count]->folderName, InputWindow::FOLDER_INPUT);
while (input_window->visible() && !GUI_USE_DEFAULT_FOLDER_NAMES)
{
Fl::wait();
}
same = false;
for(unsigned int ui = 0; ui < folders.size(); ui++)
{
if (!strcmp(folders[ui]->folderName, input_window->getName()))
{
same = true;
break;
}
}
}
if(strcmp(input_window->getName(), ""))
strcpy(folders[count]->folderName, input_window->getName());
MainWindow::AddFolder(folders[count]->folderName, count, false);
delete input_window;
}
}
else {
fl_alert("Error adding structure \"%s\"! Could not parse the specified format for this file.\n",
localCopy);
}
Free(localCopy);
}
