DatabaseConnectionFormat::DatabaseConnectionFormat(QObject *p) :
DocumentFormat(p,
DocumentFormatFlags(DocumentFormatFlag_NoPack)
| DocumentFormatFlag_NoFullMemoryLoad
| DocumentFormatFlag_Hidden
| DocumentFormatFlag_SupportWriting
| DocumentFormatFlag_CannotBeCreated
| DocumentFormatFlag_AllowDuplicateNames
| DocumentFormatFlag_DirectWriteOperations)
{
formatName = DocumentFormat::tr("Database connection");
formatDescription = DocumentFormat::tr("A fake format that was added to implement shared database connection within existing document model.");
supportedObjectTypes << GObjectTypes::SEQUENCE
<< GObjectTypes::MULTIPLE_SEQUENCE_ALIGNMENT
<< GObjectTypes::UNKNOWN
<< GObjectTypes::UNLOADED
<< GObjectTypes::TEXT
<< GObjectTypes::SEQUENCE
<< GObjectTypes::ANNOTATION_TABLE
<< GObjectTypes::VARIANT_TRACK
<< GObjectTypes::CHROMATOGRAM
<< GObjectTypes::MULTIPLE_CHROMATOGRAM_ALIGNMENT
<< GObjectTypes::PHYLOGENETIC_TREE
<< GObjectTypes::BIOSTRUCTURE_3D
<< GObjectTypes::ASSEMBLY;
}
NEXUSFormat::NEXUSFormat(QObject *p) :
DocumentFormat(p, DocumentFormatFlags(DocumentFormatFlag_SupportWriting) | DocumentFormatFlag_OnlyOneObject, QStringList()<<"nex"<<"nxs") // disable streaming for now
{
formatName = tr("NEXUS");
formatDescription = tr("Nexus is a multiple alignment and phylogenetic trees file format");
supportedObjectTypes += GObjectTypes::MULTIPLE_ALIGNMENT;
supportedObjectTypes += GObjectTypes::PHYLOGENETIC_TREE;
}
BAMFormat::BAMFormat()
: DbiDocumentFormat(
BAM_DBI_ID,
BaseDocumentFormats::BAM,
tr("BAM File"),
QStringList("bam"),
DocumentFormatFlags(DocumentFormatFlag_NoPack) | DocumentFormatFlag_NoFullMemoryLoad
| DocumentFormatFlag_Hidden | DocumentFormatFlag_SupportWriting)
{
}
// PhylipFormat
PhylipFormat::PhylipFormat(QObject *p)
: DocumentFormat(p, DocumentFormatFlags(DocumentFormatFlag_SupportWriting) | DocumentFormatFlag_OnlyOneObject,
QStringList() << "phy" << "ph"){
formatDescription = tr("PHYLIP multiple alignment format for phylogenetic applications.");
supportedObjectTypes+=GObjectTypes::MULTIPLE_ALIGNMENT;
}